Wall clock time and date at job start Tue Mar 31 2020 15:19:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30180 * 126.80257 * 2 1 4 4 O 1.20921 * 111.60526 * 180.02562 * 3 2 1 5 5 C 1.34038 * 111.56906 * 359.76782 * 4 3 2 6 6 C 1.50698 * 126.77910 * 180.28070 * 5 4 3 7 7 C 1.35454 * 106.44380 * 0.37805 * 5 4 3 8 8 C 1.50703 * 128.00554 * 179.91289 * 7 5 4 9 9 N 1.46899 * 109.47107 * 269.67438 * 8 7 5 10 10 C 1.46904 * 111.00029 * 179.97438 * 9 8 7 11 11 C 1.52997 * 109.46950 * 180.02562 * 10 9 8 12 12 C 1.53003 * 109.47071 * 180.02562 * 11 10 9 13 13 N 1.46495 * 109.47301 * 179.97438 * 12 11 10 14 14 C 1.34772 * 120.00072 * 179.97438 * 13 12 11 15 15 O 1.21281 * 120.00021 * 0.02562 * 14 13 12 16 16 C 1.50704 * 119.99923 * 180.02562 * 14 13 12 17 17 S 1.81003 * 109.46934 * 179.97438 * 16 14 13 18 18 C 1.76204 * 99.99969 * 179.97438 * 17 16 14 19 19 H 1.07999 * 119.99775 * 0.02562 * 18 17 16 20 20 C 1.38798 * 120.00021 * 179.97438 * 18 17 16 21 21 N 1.31634 * 119.99873 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99918 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47046 * 60.00271 * 22 20 18 24 24 H 1.48504 * 109.46836 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47036 * 300.00440 * 22 20 18 26 26 H 1.08998 * 109.47175 * 269.97179 * 1 2 3 27 27 H 1.09001 * 109.47365 * 29.97178 * 1 2 3 28 28 H 1.09004 * 109.47013 * 149.97293 * 1 2 3 29 29 H 1.09003 * 109.47192 * 270.11205 * 6 5 4 30 30 H 1.08998 * 109.47171 * 30.11340 * 6 5 4 31 31 H 1.09004 * 109.47291 * 150.11341 * 6 5 4 32 32 H 1.09002 * 109.47152 * 149.67525 * 8 7 5 33 33 H 1.09001 * 109.46980 * 29.67626 * 8 7 5 34 34 H 1.00902 * 111.00582 * 303.95889 * 9 8 7 35 35 H 1.08995 * 109.47167 * 300.00240 * 10 9 8 36 36 H 1.09003 * 109.46442 * 60.00214 * 10 9 8 37 37 H 1.09005 * 109.47424 * 300.00229 * 11 10 9 38 38 H 1.09004 * 109.47266 * 59.99979 * 11 10 9 39 39 H 1.08995 * 109.47051 * 300.00167 * 12 11 10 40 40 H 1.09003 * 109.46901 * 60.00330 * 12 11 10 41 41 H 0.97006 * 120.00241 * 0.02562 * 13 12 11 42 42 H 1.08995 * 109.47339 * 300.00049 * 16 14 13 43 43 H 1.09003 * 109.46887 * 60.00381 * 16 14 13 44 44 H 0.96997 * 119.99572 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4537 0.7254 -0.0005 5 6 3.6025 -0.6067 0.0041 6 6 4.9021 -1.3694 0.0110 7 6 2.3539 -1.1320 -0.0007 8 6 1.9591 -2.5864 -0.0003 9 7 1.8295 -3.0589 -1.3852 10 6 1.4453 -4.4763 -1.4240 11 6 1.3210 -4.9313 -2.8795 12 6 0.9203 -6.4074 -2.9199 13 7 0.8007 -6.8429 -4.3135 14 6 0.4556 -8.1150 -4.5947 15 8 0.2436 -8.8991 -3.6940 16 6 0.3332 -8.5632 -6.0283 17 16 -0.1396 -10.3097 -6.0761 18 6 -0.2096 -10.5602 -7.8189 19 1 0.0109 -9.7441 -8.4910 20 6 -0.5470 -11.8066 -8.3279 21 7 -0.8153 -12.8014 -7.5087 22 14 -0.6205 -12.0723 -10.1754 23 1 0.7112 -11.7908 -10.7693 24 1 -1.0018 -13.4794 -10.4584 25 1 -1.6297 -11.1578 -10.7673 26 1 -0.3633 -0.0005 1.0276 27 1 -0.3634 0.8902 -0.5134 28 1 -0.3633 -0.8898 -0.5143 29 1 5.2201 -1.5548 -1.0150 30 1 5.6637 -0.7851 0.5274 31 1 4.7628 -2.3202 0.5255 32 1 1.0054 -2.7038 0.5144 33 1 2.7232 -3.1702 0.5128 34 1 1.1734 -2.4918 -1.9010 35 1 2.2061 -5.0729 -0.9209 36 1 0.4882 -4.6072 -0.9190 37 1 0.5603 -4.3347 -3.3831 38 1 2.2783 -4.8004 -3.3841 39 1 1.6806 -7.0042 -2.4163 40 1 -0.0372 -6.5378 -2.4155 41 1 0.9706 -6.2160 -5.0340 42 1 -0.4274 -7.9666 -6.5319 43 1 1.2905 -8.4324 -6.5329 44 1 -1.0514 -13.6724 -7.8644 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154803360.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:19:34 Heat of formation + Delta-G solvation = 6.376592 kcal Electronic energy + Delta-G solvation = -23626.463149 eV Core-core repulsion = 19900.808885 eV Total energy + Delta-G solvation = -3725.654264 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -45.31546 -39.20838 -37.66920 -35.70193 -34.52490 -33.81820 -32.43074 -31.58487 -29.39321 -29.09992 -28.25403 -26.41595 -25.48008 -23.92405 -22.08246 -21.65959 -20.59195 -20.27131 -18.06697 -17.83566 -17.32581 -16.66252 -16.23863 -16.09458 -15.53701 -15.07948 -14.88667 -14.80245 -14.61841 -14.02679 -13.93337 -13.82770 -13.75740 -13.54081 -13.23038 -13.11451 -12.86202 -12.66196 -12.58642 -12.51688 -11.98182 -11.88952 -11.75340 -11.36223 -11.14981 -11.04822 -11.03835 -10.77067 -10.31560 -9.82848 -9.62600 -9.41438 -9.06653 -8.96124 -8.88412 -8.24478 -6.50421 -6.21766 -3.92524 1.05171 1.73131 2.69386 3.01773 3.09494 3.23361 3.27204 3.30417 3.60957 3.73698 3.88652 4.00698 4.20401 4.34317 4.45652 4.65482 4.75978 4.79844 4.83335 4.92423 4.98220 4.99232 5.04794 5.13271 5.18878 5.20208 5.22588 5.26638 5.35268 5.38262 5.49235 5.51331 5.64424 5.70835 5.83784 5.91269 5.95433 6.13691 6.43207 6.61770 6.82008 7.59040 7.70094 7.88415 8.34818 8.60758 9.23394 10.85608 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.031771 B = 0.001457 C = 0.001455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.082084 B =19218.720188 C =19245.848963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.024 3.976 3 N -0.368 5.368 4 O 0.094 5.906 5 C -0.008 4.008 6 C -0.073 4.073 7 C -0.205 4.205 8 C 0.139 3.861 9 N -0.685 5.685 10 C 0.062 3.938 11 C -0.128 4.128 12 C 0.123 3.877 13 N -0.739 5.739 14 C 0.531 3.469 15 O -0.519 6.519 16 C -0.154 4.154 17 S -0.061 6.061 18 C -0.537 4.537 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.093 0.907 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.045 0.955 33 H 0.086 0.914 34 H 0.343 0.657 35 H 0.079 0.921 36 H 0.036 0.964 37 H 0.067 0.933 38 H 0.079 0.921 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.398 0.602 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.852 26.151 15.978 31.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.135 4.135 3 N -0.074 5.074 4 O 0.031 5.969 5 C -0.072 4.072 6 C -0.130 4.130 7 C -0.209 4.209 8 C 0.010 3.990 9 N -0.316 5.316 10 C -0.068 4.068 11 C -0.167 4.167 12 C -0.002 4.002 13 N -0.394 5.394 14 C 0.317 3.683 15 O -0.393 6.393 16 C -0.304 4.304 17 S 0.166 5.834 18 C -0.685 4.685 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.200 1.200 26 H 0.099 0.901 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.111 0.889 30 H 0.100 0.900 31 H 0.110 0.890 32 H 0.063 0.937 33 H 0.105 0.895 34 H 0.160 0.840 35 H 0.097 0.903 36 H 0.054 0.946 37 H 0.086 0.914 38 H 0.098 0.902 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.232 0.768 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.904 25.820 17.458 32.155 hybrid contribution -0.771 0.393 -2.329 2.484 sum 7.133 26.213 15.129 31.095 Atomic orbital electron populations 1.20166 0.86049 1.03769 1.03427 1.23474 0.98861 0.88612 1.02587 1.73861 0.89284 1.23915 1.20388 1.84813 1.21634 1.22661 1.67836 1.24324 0.98389 0.83577 1.00933 1.20359 0.89718 0.98390 1.04537 1.20789 0.91758 0.96950 1.11450 1.20066 1.00608 0.88102 0.90264 1.60472 1.55074 1.03402 1.12689 1.21874 0.99688 0.88566 0.96645 1.21736 1.02912 0.95180 0.96823 1.21174 1.01685 0.93737 0.83607 1.45982 1.73125 1.12303 1.07996 1.20314 0.75570 0.81131 0.91265 1.90700 1.47931 1.52614 1.48037 1.23534 1.05087 1.06948 0.94865 1.85390 1.89566 0.98988 1.09456 1.22833 1.54719 0.99471 0.91456 0.90965 1.24991 0.94550 0.94915 0.99096 1.70010 1.43491 1.01950 1.34840 0.86223 0.78700 0.77431 0.83138 1.19933 1.20800 1.19953 0.90111 0.90334 0.90307 0.88894 0.90010 0.88992 0.93651 0.89528 0.83957 0.90265 0.94560 0.91399 0.90240 0.91533 0.91784 0.76794 0.89234 0.89197 0.92129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.42 10.39 36.00 0.37 -0.05 16 2 C 0.02 0.20 7.33 -82.10 -0.60 -0.40 16 3 N -0.37 -3.79 12.07 33.42 0.40 -3.39 16 4 O 0.09 0.88 11.20 17.18 0.19 1.07 16 5 C -0.01 -0.06 7.49 -35.30 -0.26 -0.32 16 6 C -0.07 -0.28 10.30 36.00 0.37 0.09 16 7 C -0.21 -1.48 5.83 -104.42 -0.61 -2.09 16 8 C 0.14 0.78 6.01 -4.98 -0.03 0.75 16 9 N -0.68 -4.13 6.49 -115.05 -0.75 -4.87 16 10 C 0.06 0.38 5.69 -3.82 -0.02 0.36 16 11 C -0.13 -0.90 5.59 -26.73 -0.15 -1.05 16 12 C 0.12 1.30 5.67 -4.04 -0.02 1.28 16 13 N -0.74 -9.46 5.56 -60.30 -0.33 -9.80 16 14 C 0.53 9.79 7.85 -10.99 -0.09 9.71 16 15 O -0.52 -11.72 15.86 5.56 0.09 -11.64 16 16 C -0.15 -3.07 6.16 36.01 0.22 -2.85 16 17 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 18 C -0.54 -15.26 9.50 30.94 0.29 -14.96 16 19 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 20 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 21 N -0.87 -26.11 13.22 55.49 0.73 -25.37 16 22 Si 0.92 21.32 29.55 -169.99 -5.02 16.30 16 23 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 25 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 26 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.09 0.25 7.44 -51.93 -0.39 -0.13 16 32 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.09 0.43 7.44 -51.93 -0.39 0.04 16 34 H 0.34 2.01 8.72 -39.29 -0.34 1.67 16 35 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.40 3.92 8.47 -40.82 -0.35 3.58 16 42 H 0.09 1.65 8.14 -51.92 -0.42 1.22 16 43 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 44 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 391.31 15.07 5.90 5.90 Total: -1.00 -35.91 391.31 -8.55 -44.46 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -6.92 Total: -1.27 kcal Atomic # 6 Polarization: -6.91 SS G_CDS: -0.62 Total: -7.53 kcal Atomic # 7 Polarization: -43.49 SS G_CDS: 0.06 Total: -43.44 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.28 Total: -10.56 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -35.91 -8.55 -44.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154803360.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.834 kcal (2) G-P(sol) polarization free energy of solvation -35.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds