Wall clock time and date at job start Tue Mar 31 2020 15:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30180 * 126.80257 * 2 1 4 4 O 1.20921 * 111.60526 * 180.02562 * 3 2 1 5 5 C 1.34038 * 111.56906 * 359.76782 * 4 3 2 6 6 C 1.50698 * 126.77910 * 180.28070 * 5 4 3 7 7 C 1.35454 * 106.44380 * 0.37805 * 5 4 3 8 8 C 1.50703 * 128.00554 * 179.91289 * 7 5 4 9 9 N 1.46899 * 109.47107 * 269.67438 * 8 7 5 10 10 C 1.46904 * 111.00029 * 179.97438 * 9 8 7 11 11 C 1.52997 * 109.46950 * 180.02562 * 10 9 8 12 12 C 1.53003 * 109.47071 * 180.02562 * 11 10 9 13 13 N 1.46495 * 109.47301 * 179.97438 * 12 11 10 14 14 C 1.34772 * 120.00072 * 179.97438 * 13 12 11 15 15 O 1.21281 * 120.00021 * 0.02562 * 14 13 12 16 16 C 1.50704 * 119.99923 * 180.02562 * 14 13 12 17 17 S 1.81003 * 109.46934 * 179.97438 * 16 14 13 18 18 C 1.76204 * 99.99969 * 179.97438 * 17 16 14 19 19 H 1.07999 * 119.99775 * 0.02562 * 18 17 16 20 20 C 1.38798 * 120.00021 * 179.97438 * 18 17 16 21 21 N 1.31634 * 119.99873 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99918 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47046 * 60.00271 * 22 20 18 24 24 H 1.48504 * 109.46836 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47036 * 300.00440 * 22 20 18 26 26 H 1.08998 * 109.47175 * 269.97179 * 1 2 3 27 27 H 1.09001 * 109.47365 * 29.97178 * 1 2 3 28 28 H 1.09004 * 109.47013 * 149.97293 * 1 2 3 29 29 H 1.09003 * 109.47192 * 270.11205 * 6 5 4 30 30 H 1.08998 * 109.47171 * 30.11340 * 6 5 4 31 31 H 1.09004 * 109.47291 * 150.11341 * 6 5 4 32 32 H 1.09002 * 109.47152 * 149.67525 * 8 7 5 33 33 H 1.09001 * 109.46980 * 29.67626 * 8 7 5 34 34 H 1.00902 * 111.00582 * 303.95889 * 9 8 7 35 35 H 1.08995 * 109.47167 * 300.00240 * 10 9 8 36 36 H 1.09003 * 109.46442 * 60.00214 * 10 9 8 37 37 H 1.09005 * 109.47424 * 300.00229 * 11 10 9 38 38 H 1.09004 * 109.47266 * 59.99979 * 11 10 9 39 39 H 1.08995 * 109.47051 * 300.00167 * 12 11 10 40 40 H 1.09003 * 109.46901 * 60.00330 * 12 11 10 41 41 H 0.97006 * 120.00241 * 0.02562 * 13 12 11 42 42 H 1.08995 * 109.47339 * 300.00049 * 16 14 13 43 43 H 1.09003 * 109.46887 * 60.00381 * 16 14 13 44 44 H 0.96997 * 119.99572 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4537 0.7254 -0.0005 5 6 3.6025 -0.6067 0.0041 6 6 4.9021 -1.3694 0.0110 7 6 2.3539 -1.1320 -0.0007 8 6 1.9591 -2.5864 -0.0003 9 7 1.8295 -3.0589 -1.3852 10 6 1.4453 -4.4763 -1.4240 11 6 1.3210 -4.9313 -2.8795 12 6 0.9203 -6.4074 -2.9199 13 7 0.8007 -6.8429 -4.3135 14 6 0.4556 -8.1150 -4.5947 15 8 0.2436 -8.8991 -3.6940 16 6 0.3332 -8.5632 -6.0283 17 16 -0.1396 -10.3097 -6.0761 18 6 -0.2096 -10.5602 -7.8189 19 1 0.0109 -9.7441 -8.4910 20 6 -0.5470 -11.8066 -8.3279 21 7 -0.8153 -12.8014 -7.5087 22 14 -0.6205 -12.0723 -10.1754 23 1 0.7112 -11.7908 -10.7693 24 1 -1.0018 -13.4794 -10.4584 25 1 -1.6297 -11.1578 -10.7673 26 1 -0.3633 -0.0005 1.0276 27 1 -0.3634 0.8902 -0.5134 28 1 -0.3633 -0.8898 -0.5143 29 1 5.2201 -1.5548 -1.0150 30 1 5.6637 -0.7851 0.5274 31 1 4.7628 -2.3202 0.5255 32 1 1.0054 -2.7038 0.5144 33 1 2.7232 -3.1702 0.5128 34 1 1.1734 -2.4918 -1.9010 35 1 2.2061 -5.0729 -0.9209 36 1 0.4882 -4.6072 -0.9190 37 1 0.5603 -4.3347 -3.3831 38 1 2.2783 -4.8004 -3.3841 39 1 1.6806 -7.0042 -2.4163 40 1 -0.0372 -6.5378 -2.4155 41 1 0.9706 -6.2160 -5.0340 42 1 -0.4274 -7.9666 -6.5319 43 1 1.2905 -8.4324 -6.5329 44 1 -1.0514 -13.6724 -7.8644 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154803360.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:19:33 Heat of formation + Delta-G solvation = -19.941876 kcal Electronic energy + Delta-G solvation = -23627.604403 eV Core-core repulsion = 19900.808885 eV Total energy + Delta-G solvation = -3726.795519 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -45.90704 -40.58940 -38.23134 -36.53881 -35.30069 -34.57436 -34.39705 -32.51237 -30.57699 -29.65238 -28.82776 -27.68487 -26.98951 -24.65694 -22.65880 -22.29958 -21.64697 -21.07733 -19.80144 -18.68225 -17.93440 -17.71078 -17.33332 -17.12984 -16.86668 -16.55949 -15.93273 -15.63623 -15.44549 -15.40800 -14.66899 -14.49127 -14.43211 -14.32754 -14.27800 -13.86334 -13.72115 -13.54956 -13.29281 -13.15967 -13.05366 -12.95066 -12.85269 -12.72757 -12.53023 -12.41017 -11.92719 -11.76499 -11.73109 -11.11929 -10.96356 -10.86744 -10.27015 -10.15544 -10.09020 -9.39274 -8.65754 -8.33531 -6.11771 0.50390 1.17301 1.28419 1.44845 1.48132 1.57969 1.63137 2.20968 2.27529 2.32361 3.00514 3.18457 3.30723 3.35476 3.53459 3.87591 3.95572 3.99139 4.10144 4.21802 4.26030 4.32089 4.39336 4.52725 4.52985 4.59603 4.60536 4.64237 4.72131 4.73680 4.79812 4.82681 4.85357 4.98570 5.14975 5.20276 5.23511 5.30453 5.42628 5.48744 5.98699 6.20630 6.37860 6.53686 7.07656 7.26988 7.31120 8.75405 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.031771 B = 0.001457 C = 0.001455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.082084 B =19218.720188 C =19245.848963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.018 3.982 3 N -0.405 5.405 4 O 0.075 5.925 5 C -0.010 4.010 6 C -0.072 4.072 7 C -0.213 4.213 8 C 0.143 3.857 9 N -0.687 5.687 10 C 0.066 3.934 11 C -0.113 4.113 12 C 0.121 3.879 13 N -0.713 5.713 14 C 0.532 3.468 15 O -0.568 6.568 16 C -0.130 4.130 17 S -0.153 6.153 18 C -0.548 4.548 19 H 0.083 0.917 20 C 0.014 3.986 21 N -0.911 5.911 22 Si 0.998 3.002 23 H -0.262 1.262 24 H -0.279 1.279 25 H -0.262 1.262 26 H 0.090 0.910 27 H 0.076 0.924 28 H 0.094 0.906 29 H 0.098 0.902 30 H 0.093 0.907 31 H 0.105 0.895 32 H 0.052 0.948 33 H 0.096 0.904 34 H 0.344 0.656 35 H 0.080 0.920 36 H 0.039 0.961 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.058 0.942 40 H 0.057 0.943 41 H 0.417 0.583 42 H 0.110 0.890 43 H 0.110 0.890 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.403 27.499 14.916 32.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.141 4.141 3 N -0.115 5.115 4 O 0.015 5.985 5 C -0.074 4.074 6 C -0.129 4.129 7 C -0.217 4.217 8 C 0.014 3.986 9 N -0.318 5.318 10 C -0.063 4.063 11 C -0.151 4.151 12 C -0.003 4.003 13 N -0.367 5.367 14 C 0.318 3.682 15 O -0.446 6.446 16 C -0.282 4.282 17 S 0.074 5.926 18 C -0.696 4.696 19 H 0.101 0.899 20 C -0.191 4.191 21 N -0.547 5.547 22 Si 0.820 3.180 23 H -0.187 1.187 24 H -0.204 1.204 25 H -0.187 1.187 26 H 0.108 0.892 27 H 0.095 0.905 28 H 0.113 0.887 29 H 0.117 0.883 30 H 0.112 0.888 31 H 0.124 0.876 32 H 0.070 0.930 33 H 0.114 0.886 34 H 0.162 0.838 35 H 0.098 0.902 36 H 0.058 0.942 37 H 0.097 0.903 38 H 0.102 0.898 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.254 0.746 42 H 0.128 0.872 43 H 0.128 0.872 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 8.491 27.236 16.392 32.903 hybrid contribution -0.902 0.084 -1.910 2.114 sum 7.589 27.321 14.481 31.839 Atomic orbital electron populations 1.20278 0.84468 1.04440 1.04233 1.23994 1.00056 0.88658 1.01439 1.73850 0.89892 1.25274 1.22454 1.84766 1.21465 1.23884 1.68434 1.24969 0.99797 0.82954 0.99708 1.20522 0.88488 0.98663 1.05202 1.21008 0.91583 0.97465 1.11643 1.20083 1.01251 0.87116 0.90145 1.60442 1.55180 1.03225 1.12994 1.21795 0.99974 0.88678 0.95884 1.21595 1.03322 0.92416 0.97767 1.21329 1.01221 0.95978 0.81744 1.45749 1.70582 1.10479 1.09879 1.20066 0.75701 0.82498 0.89966 1.90689 1.50629 1.54414 1.48917 1.23384 1.06442 1.01547 0.96785 1.85569 1.90399 1.06124 1.10480 1.23185 1.54681 1.00176 0.91538 0.89870 1.26126 0.93778 0.94469 1.04738 1.70179 1.44611 1.02546 1.37401 0.85008 0.79350 0.77545 0.76115 1.18653 1.20415 1.18682 0.89172 0.90523 0.88738 0.88346 0.88824 0.87628 0.92969 0.88615 0.83788 0.90161 0.94240 0.90263 0.89811 0.92324 0.92503 0.74627 0.87193 0.87179 0.92001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.76 10.39 71.23 0.74 -0.02 16 2 C 0.02 0.28 7.33 43.57 0.32 0.60 16 3 N -0.40 -8.43 12.07 -49.55 -0.60 -9.03 16 4 O 0.08 1.41 11.20 71.66 0.80 2.21 16 5 C -0.01 -0.13 7.49 25.04 0.19 0.05 16 6 C -0.07 -0.42 10.30 71.24 0.73 0.32 16 7 C -0.21 -2.78 5.83 -19.73 -0.12 -2.90 16 8 C 0.14 1.29 6.01 85.56 0.51 1.80 16 9 N -0.69 -6.50 6.49 -517.92 -3.36 -9.87 16 10 C 0.07 0.63 5.69 86.30 0.49 1.12 16 11 C -0.11 -1.25 5.59 30.59 0.17 -1.08 16 12 C 0.12 2.33 5.67 86.38 0.49 2.82 16 13 N -0.71 -16.61 5.56 -463.07 -2.57 -19.19 16 14 C 0.53 19.09 7.85 87.66 0.69 19.78 16 15 O -0.57 -25.97 15.86 -3.03 -0.05 -26.01 16 16 C -0.13 -5.06 6.16 71.24 0.44 -4.62 16 17 S -0.15 -8.44 20.57 -56.49 -1.16 -9.61 16 18 C -0.55 -31.12 9.50 67.95 0.65 -30.48 16 19 H 0.08 4.36 7.80 -2.91 -0.02 4.34 16 20 C 0.01 0.78 5.49 84.86 0.47 1.24 16 21 N -0.91 -55.77 13.22 21.65 0.29 -55.49 16 22 Si 1.00 43.24 29.55 68.60 2.03 45.27 16 23 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 24 H -0.28 -11.79 7.11 99.48 0.71 -11.09 16 25 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 26 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.09 0.61 8.14 -2.38 -0.02 0.59 16 29 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16 31 H 0.11 0.34 7.44 -2.39 -0.02 0.32 16 32 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 33 H 0.10 0.70 7.44 -2.39 -0.02 0.68 16 34 H 0.34 3.15 8.72 -89.69 -0.78 2.37 16 35 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.04 0.37 8.14 -2.39 -0.02 0.35 16 37 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 38 H 0.08 0.92 8.14 -2.39 -0.02 0.91 16 39 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.42 6.79 8.47 -92.70 -0.79 6.00 16 42 H 0.11 3.81 8.14 -2.40 -0.02 3.79 16 43 H 0.11 3.82 8.14 -2.39 -0.02 3.80 16 44 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -80.45 391.31 0.60 -79.85 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -0.55 Total: 13.20 kcal Atomic # 6 Polarization: -17.12 SS G_CDS: 5.77 Total: -11.35 kcal Atomic # 7 Polarization: -87.32 SS G_CDS: -6.25 Total: -93.56 kcal Atomic # 8 Polarization: -24.56 SS G_CDS: 0.75 Total: -23.80 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Atomic # 16 Polarization: -8.44 SS G_CDS: -1.16 Total: -9.61 kcal Total: -80.45 0.60 -79.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154803360.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.911 kcal (2) G-P(sol) polarization free energy of solvation -80.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds