Wall clock time and date at job start Tue Mar 31 2020 15:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34332 * 126.44280 * 2 1 4 4 N 1.34471 * 107.66856 * 180.02562 * 3 2 1 5 5 C 1.30253 * 108.70602 * 0.02562 * 4 3 2 6 6 C 1.50696 * 125.62276 * 180.26292 * 5 4 3 7 7 H 1.09000 * 109.47023 * 164.69136 * 6 5 4 8 8 C 1.53003 * 109.47156 * 284.69124 * 6 5 4 9 9 N 1.46898 * 109.46969 * 44.69234 * 6 5 4 10 10 C 1.46899 * 110.99841 * 155.00181 * 9 6 5 11 11 C 1.53007 * 109.47313 * 180.02562 * 10 9 6 12 12 C 1.53005 * 109.47418 * 179.97438 * 11 10 9 13 13 N 1.46494 * 109.47035 * 179.97438 * 12 11 10 14 14 C 1.34774 * 120.00129 * 179.97438 * 13 12 11 15 15 O 1.21285 * 119.99591 * 0.02562 * 14 13 12 16 16 C 1.50700 * 120.00474 * 179.97438 * 14 13 12 17 17 S 1.80999 * 109.47215 * 180.02562 * 16 14 13 18 18 C 1.76201 * 99.99659 * 180.02562 * 17 16 14 19 19 H 1.07991 * 120.00290 * 359.97438 * 18 17 16 20 20 C 1.38802 * 119.99568 * 180.02562 * 18 17 16 21 21 N 1.31630 * 120.00538 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99663 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47388 * 60.00230 * 22 20 18 24 24 H 1.48502 * 109.47176 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.47417 * 300.00036 * 22 20 18 26 26 O 1.33974 * 108.75653 * 359.97438 * 5 4 3 27 27 H 1.09001 * 109.47105 * 269.97168 * 1 2 3 28 28 H 1.09000 * 109.47096 * 29.97525 * 1 2 3 29 29 H 1.09006 * 109.47018 * 149.97808 * 1 2 3 30 30 H 1.08005 * 126.16232 * 0.02562 * 3 2 1 31 31 H 1.08994 * 109.46975 * 300.00308 * 8 6 5 32 32 H 1.08997 * 109.46681 * 60.00310 * 8 6 5 33 33 H 1.09001 * 109.47091 * 180.02562 * 8 6 5 34 34 H 1.00895 * 111.00024 * 31.04901 * 9 6 5 35 35 H 1.09006 * 109.47379 * 299.99832 * 10 9 6 36 36 H 1.08997 * 109.47547 * 59.99845 * 10 9 6 37 37 H 1.09001 * 109.46766 * 299.99719 * 11 10 9 38 38 H 1.08997 * 109.46955 * 59.99464 * 11 10 9 39 39 H 1.08996 * 109.46905 * 300.00162 * 12 11 10 40 40 H 1.08999 * 109.46700 * 59.99979 * 12 11 10 41 41 H 0.97004 * 120.00225 * 0.02562 * 13 12 11 42 42 H 1.09001 * 109.47033 * 300.00470 * 16 14 13 43 43 H 1.08997 * 109.46727 * 60.00240 * 16 14 13 44 44 H 0.96996 * 120.00211 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5781 0.6479 -0.0006 5 6 3.5766 -0.6547 -0.0015 6 6 4.8005 -1.5339 0.0033 7 1 4.5161 -2.5510 0.2727 8 6 5.4342 -1.5333 -1.3893 9 7 5.7683 -1.0205 0.9819 10 6 6.6567 -2.0906 1.4548 11 6 7.6479 -1.5190 2.4706 12 6 8.5729 -2.6337 2.9636 13 7 9.5222 -2.0862 3.9357 14 6 10.4396 -2.8905 4.5083 15 8 10.4794 -4.0676 4.2184 16 6 11.4166 -2.3273 5.5080 17 16 12.5107 -3.6460 6.0912 18 6 13.5175 -2.7341 7.2135 19 1 13.3465 -1.6774 7.3561 20 6 14.5311 -3.3738 7.9135 21 7 14.7399 -4.6617 7.7393 22 14 15.5989 -2.4070 9.1027 23 1 14.7464 -1.8164 10.1656 24 1 16.6008 -3.3141 9.7181 25 1 16.2988 -1.3218 8.3696 26 8 2.3075 -1.0840 -0.0009 27 1 -0.3633 -0.0005 1.0277 28 1 -0.3633 0.8902 -0.5134 29 1 -0.3633 -0.8898 -0.5142 30 1 1.9821 2.1113 0.0004 31 1 4.7161 -1.9142 -2.1154 32 1 5.7186 -0.5162 -1.6586 33 1 6.3192 -2.1696 -1.3860 34 1 5.2985 -0.5729 1.7545 35 1 6.0633 -2.8733 1.9276 36 1 7.2030 -2.5094 0.6096 37 1 8.2414 -0.7363 1.9982 38 1 7.1013 -1.1005 3.3157 39 1 7.9791 -3.4161 3.4360 40 1 9.1194 -3.0525 2.1186 41 1 9.4901 -1.1449 4.1679 42 1 12.0106 -1.5455 5.0346 43 1 10.8706 -1.9075 6.3527 44 1 15.4484 -5.1087 8.2282 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154809070.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:18 Heat of formation + Delta-G solvation = -24.038707 kcal Electronic energy + Delta-G solvation = -23553.664031 eV Core-core repulsion = 19826.690860 eV Total energy + Delta-G solvation = -3726.973171 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.80199 -39.18463 -37.89726 -35.41754 -35.00668 -33.26440 -32.41332 -32.11645 -30.14253 -28.57466 -27.32840 -25.52104 -24.87086 -23.66948 -22.21563 -21.75018 -20.94731 -20.26319 -17.86846 -17.64196 -17.22630 -16.63688 -16.19874 -16.09606 -15.66011 -15.31393 -14.81637 -14.78726 -14.53878 -14.22559 -14.00038 -13.86768 -13.63580 -13.21737 -13.06740 -12.96822 -12.91117 -12.61202 -12.52985 -12.05306 -11.89640 -11.75927 -11.67365 -11.66549 -11.11113 -11.02956 -11.02124 -10.89084 -10.75281 -9.80886 -9.39038 -9.15647 -9.04828 -9.00734 -8.85683 -8.22304 -6.48331 -6.19934 -3.90542 0.93103 2.03882 2.24554 3.04021 3.12512 3.24920 3.28615 3.31783 3.48499 3.56922 3.82620 4.22247 4.26131 4.44563 4.52948 4.61625 4.67562 4.75986 4.81451 4.84993 4.91133 4.99825 5.15088 5.18720 5.21779 5.25366 5.30368 5.40664 5.43445 5.52574 5.56650 5.67754 5.77695 5.86947 5.88262 5.94453 5.99370 6.16419 6.39759 6.64721 6.79660 7.31670 7.60907 7.73514 8.36691 8.63832 9.25218 10.87459 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.035107 B = 0.001443 C = 0.001418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.379154 B =19399.846147 C =19738.030556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.048 4.048 3 C -0.045 4.045 4 N -0.454 5.454 5 C 0.177 3.823 6 C 0.187 3.813 7 H 0.072 0.928 8 C -0.137 4.137 9 N -0.669 5.669 10 C 0.060 3.940 11 C -0.128 4.128 12 C 0.123 3.877 13 N -0.739 5.739 14 C 0.531 3.469 15 O -0.519 6.519 16 C -0.154 4.154 17 S -0.061 6.061 18 C -0.536 4.536 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 O -0.203 6.203 27 H 0.085 0.915 28 H 0.093 0.907 29 H 0.078 0.922 30 H 0.184 0.816 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.349 0.651 35 H 0.038 0.962 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.068 0.932 39 H 0.064 0.936 40 H 0.067 0.933 41 H 0.399 0.601 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.706 10.813 -17.653 35.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.101 4.101 3 C -0.184 4.184 4 N -0.183 5.183 5 C -0.030 4.030 6 C 0.077 3.923 7 H 0.090 0.910 8 C -0.196 4.196 9 N -0.303 5.303 10 C -0.069 4.069 11 C -0.166 4.166 12 C -0.002 4.002 13 N -0.394 5.394 14 C 0.317 3.683 15 O -0.393 6.393 16 C -0.304 4.304 17 S 0.166 5.834 18 C -0.685 4.685 19 H 0.090 0.910 20 C -0.135 4.135 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.200 1.200 24 H -0.208 1.208 25 H -0.199 1.199 26 O -0.089 6.089 27 H 0.103 0.897 28 H 0.112 0.888 29 H 0.097 0.903 30 H 0.201 0.799 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.168 0.832 35 H 0.056 0.944 36 H 0.101 0.899 37 H 0.100 0.900 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.232 0.768 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -27.564 9.199 -18.574 34.488 hybrid contribution -0.717 1.699 1.818 2.590 sum -28.280 10.898 -16.756 34.631 Atomic orbital electron populations 1.20295 0.83862 1.04474 1.03939 1.23547 0.95107 0.84619 1.06864 1.23192 0.87844 1.00459 1.06911 1.70455 1.22567 1.08895 1.16348 1.26246 0.84031 0.90577 1.02133 1.19799 0.83035 0.93158 0.96321 0.91020 1.21824 1.00825 1.04110 0.92801 1.60534 1.21452 1.29823 1.18495 1.21991 0.94540 0.92084 0.98278 1.21724 0.97471 0.98765 0.98657 1.21170 0.90798 0.95819 0.92400 1.45976 1.35149 1.12859 1.45387 1.20311 0.80542 0.86367 0.81062 1.90700 1.70793 1.16134 1.61681 1.23532 1.00773 1.06160 0.99957 1.85386 1.35337 1.09434 1.53252 1.22836 1.19760 0.97462 1.28409 0.90966 1.24986 0.96665 0.95107 0.96765 1.70007 1.31056 1.08712 1.40549 0.86227 0.79532 0.79403 0.80348 1.19951 1.20812 1.19933 1.84393 1.17820 1.36782 1.69930 0.89664 0.88847 0.90287 0.79882 0.92150 0.90657 0.90725 0.83197 0.94393 0.89883 0.89982 0.91321 0.91772 0.91465 0.76758 0.89177 0.89239 0.92138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.21 10.43 36.01 0.38 0.17 16 2 C -0.05 -0.34 7.39 -35.69 -0.26 -0.61 16 3 C -0.05 -0.36 11.80 -17.77 -0.21 -0.57 16 4 N -0.45 -4.62 11.27 -11.10 -0.13 -4.74 16 5 C 0.18 1.62 6.84 -12.95 -0.09 1.53 16 6 C 0.19 1.38 3.16 -68.87 -0.22 1.17 16 7 H 0.07 0.45 7.80 -51.93 -0.40 0.05 16 8 C -0.14 -0.92 9.40 37.16 0.35 -0.57 16 9 N -0.67 -5.10 6.29 -107.95 -0.68 -5.78 16 10 C 0.06 0.42 5.48 -3.82 -0.02 0.40 16 11 C -0.13 -0.99 5.59 -26.73 -0.15 -1.14 16 12 C 0.12 1.36 5.67 -4.04 -0.02 1.34 16 13 N -0.74 -9.79 5.56 -60.30 -0.33 -10.12 16 14 C 0.53 9.99 7.85 -10.99 -0.09 9.90 16 15 O -0.52 -11.89 15.86 5.55 0.09 -11.80 16 16 C -0.15 -3.12 6.16 36.01 0.22 -2.90 16 17 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 18 C -0.54 -15.38 9.50 30.94 0.29 -15.09 16 19 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 20 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 21 N -0.87 -26.29 13.22 55.49 0.73 -25.56 16 22 Si 0.92 21.48 29.55 -169.99 -5.02 16.46 16 23 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 26 O -0.20 -1.83 10.78 5.35 0.06 -1.77 16 27 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 28 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 29 H 0.08 0.21 8.14 -51.93 -0.42 -0.22 16 30 H 0.18 0.94 8.06 -52.48 -0.42 0.51 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.43 7.45 -51.93 -0.39 0.05 16 34 H 0.35 2.75 8.35 -39.29 -0.33 2.42 16 35 H 0.04 0.25 8.06 -51.93 -0.42 -0.16 16 36 H 0.08 0.56 7.44 -51.93 -0.39 0.17 16 37 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.40 4.11 8.47 -40.82 -0.35 3.77 16 42 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 43 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 44 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 390.48 15.07 5.88 5.88 Total: -1.00 -36.54 390.48 -8.41 -44.96 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -6.89 Total: 0.69 kcal Atomic # 6 Polarization: -4.42 SS G_CDS: 0.09 Total: -4.34 kcal Atomic # 7 Polarization: -45.80 SS G_CDS: -0.41 Total: -46.21 kcal Atomic # 8 Polarization: -13.72 SS G_CDS: 0.15 Total: -13.58 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -36.54 -8.41 -44.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154809070.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.917 kcal (2) G-P(sol) polarization free energy of solvation -36.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds