Wall clock time and date at job start Tue Mar 31 2020 15:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34332 * 126.44280 * 2 1 4 4 N 1.34471 * 107.66856 * 180.02562 * 3 2 1 5 5 C 1.30253 * 108.70602 * 0.02562 * 4 3 2 6 6 C 1.50696 * 125.62276 * 180.26292 * 5 4 3 7 7 H 1.09000 * 109.47023 * 164.69136 * 6 5 4 8 8 C 1.53003 * 109.47156 * 284.69124 * 6 5 4 9 9 N 1.46898 * 109.46969 * 44.69234 * 6 5 4 10 10 C 1.46899 * 110.99841 * 155.00181 * 9 6 5 11 11 C 1.53007 * 109.47313 * 180.02562 * 10 9 6 12 12 C 1.53005 * 109.47418 * 179.97438 * 11 10 9 13 13 N 1.46494 * 109.47035 * 179.97438 * 12 11 10 14 14 C 1.34774 * 120.00129 * 179.97438 * 13 12 11 15 15 O 1.21285 * 119.99591 * 0.02562 * 14 13 12 16 16 C 1.50700 * 120.00474 * 179.97438 * 14 13 12 17 17 S 1.80999 * 109.47215 * 180.02562 * 16 14 13 18 18 C 1.76201 * 99.99659 * 180.02562 * 17 16 14 19 19 H 1.07991 * 120.00290 * 359.97438 * 18 17 16 20 20 C 1.38802 * 119.99568 * 180.02562 * 18 17 16 21 21 N 1.31630 * 120.00538 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99663 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47388 * 60.00230 * 22 20 18 24 24 H 1.48502 * 109.47176 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.47417 * 300.00036 * 22 20 18 26 26 O 1.33974 * 108.75653 * 359.97438 * 5 4 3 27 27 H 1.09001 * 109.47105 * 269.97168 * 1 2 3 28 28 H 1.09000 * 109.47096 * 29.97525 * 1 2 3 29 29 H 1.09006 * 109.47018 * 149.97808 * 1 2 3 30 30 H 1.08005 * 126.16232 * 0.02562 * 3 2 1 31 31 H 1.08994 * 109.46975 * 300.00308 * 8 6 5 32 32 H 1.08997 * 109.46681 * 60.00310 * 8 6 5 33 33 H 1.09001 * 109.47091 * 180.02562 * 8 6 5 34 34 H 1.00895 * 111.00024 * 31.04901 * 9 6 5 35 35 H 1.09006 * 109.47379 * 299.99832 * 10 9 6 36 36 H 1.08997 * 109.47547 * 59.99845 * 10 9 6 37 37 H 1.09001 * 109.46766 * 299.99719 * 11 10 9 38 38 H 1.08997 * 109.46955 * 59.99464 * 11 10 9 39 39 H 1.08996 * 109.46905 * 300.00162 * 12 11 10 40 40 H 1.08999 * 109.46700 * 59.99979 * 12 11 10 41 41 H 0.97004 * 120.00225 * 0.02562 * 13 12 11 42 42 H 1.09001 * 109.47033 * 300.00470 * 16 14 13 43 43 H 1.08997 * 109.46727 * 60.00240 * 16 14 13 44 44 H 0.96996 * 120.00211 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5781 0.6479 -0.0006 5 6 3.5766 -0.6547 -0.0015 6 6 4.8005 -1.5339 0.0033 7 1 4.5161 -2.5510 0.2727 8 6 5.4342 -1.5333 -1.3893 9 7 5.7683 -1.0205 0.9819 10 6 6.6567 -2.0906 1.4548 11 6 7.6479 -1.5190 2.4706 12 6 8.5729 -2.6337 2.9636 13 7 9.5222 -2.0862 3.9357 14 6 10.4396 -2.8905 4.5083 15 8 10.4794 -4.0676 4.2184 16 6 11.4166 -2.3273 5.5080 17 16 12.5107 -3.6460 6.0912 18 6 13.5175 -2.7341 7.2135 19 1 13.3465 -1.6774 7.3561 20 6 14.5311 -3.3738 7.9135 21 7 14.7399 -4.6617 7.7393 22 14 15.5989 -2.4070 9.1027 23 1 14.7464 -1.8164 10.1656 24 1 16.6008 -3.3141 9.7181 25 1 16.2988 -1.3218 8.3696 26 8 2.3075 -1.0840 -0.0009 27 1 -0.3633 -0.0005 1.0277 28 1 -0.3633 0.8902 -0.5134 29 1 -0.3633 -0.8898 -0.5142 30 1 1.9821 2.1113 0.0004 31 1 4.7161 -1.9142 -2.1154 32 1 5.7186 -0.5162 -1.6586 33 1 6.3192 -2.1696 -1.3860 34 1 5.2985 -0.5729 1.7545 35 1 6.0633 -2.8733 1.9276 36 1 7.2030 -2.5094 0.6096 37 1 8.2414 -0.7363 1.9982 38 1 7.1013 -1.1005 3.3157 39 1 7.9791 -3.4161 3.4360 40 1 9.1194 -3.0525 2.1186 41 1 9.4901 -1.1449 4.1679 42 1 12.0106 -1.5455 5.0346 43 1 10.8706 -1.9075 6.3527 44 1 15.4484 -5.1087 8.2282 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154809070.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:17 Heat of formation + Delta-G solvation = -53.524360 kcal Electronic energy + Delta-G solvation = -23554.942625 eV Core-core repulsion = 19826.690860 eV Total energy + Delta-G solvation = -3728.251765 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.39036 -40.59739 -38.54251 -36.41722 -35.69377 -34.57680 -33.99853 -32.77550 -31.25400 -29.66062 -27.81247 -27.64987 -25.67396 -24.33044 -22.84016 -22.43379 -21.63854 -21.54963 -19.81156 -18.31082 -17.83467 -17.71121 -17.28850 -17.22707 -16.86838 -16.67510 -16.04734 -15.83693 -15.68141 -15.15886 -14.91944 -14.64866 -14.43819 -14.33985 -14.00599 -13.86635 -13.64331 -13.32785 -13.23867 -13.16968 -13.15849 -12.85735 -12.67739 -12.50972 -12.49621 -12.42854 -12.32320 -11.80728 -11.73285 -11.51220 -11.12022 -10.95400 -10.27335 -10.09776 -9.68864 -9.56314 -8.65973 -8.33610 -6.11945 0.36503 1.27826 1.44818 1.47077 1.51660 1.58342 1.62638 1.64983 2.27078 2.31295 2.94419 3.00453 3.07484 3.33709 3.79536 3.94162 3.97459 4.00898 4.04080 4.09523 4.19786 4.27151 4.31727 4.41482 4.52586 4.54132 4.57570 4.65085 4.69129 4.69868 4.80447 4.88915 5.02081 5.15044 5.16368 5.20451 5.25126 5.33508 5.42472 5.47461 5.84198 6.20514 6.20814 6.52858 6.72243 7.07525 7.26224 8.75404 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.035107 B = 0.001443 C = 0.001418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.379154 B =19399.846147 C =19738.030556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.047 4.047 3 C -0.066 4.066 4 N -0.482 5.482 5 C 0.165 3.835 6 C 0.187 3.813 7 H 0.083 0.917 8 C -0.132 4.132 9 N -0.673 5.673 10 C 0.063 3.937 11 C -0.113 4.113 12 C 0.122 3.878 13 N -0.713 5.713 14 C 0.532 3.468 15 O -0.567 6.567 16 C -0.130 4.130 17 S -0.152 6.152 18 C -0.549 4.549 19 H 0.083 0.917 20 C 0.014 3.986 21 N -0.911 5.911 22 Si 0.998 3.002 23 H -0.262 1.262 24 H -0.279 1.279 25 H -0.262 1.262 26 O -0.216 6.216 27 H 0.097 0.903 28 H 0.115 0.885 29 H 0.084 0.916 30 H 0.205 0.795 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.083 0.917 34 H 0.347 0.653 35 H 0.043 0.957 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.058 0.942 40 H 0.060 0.940 41 H 0.417 0.583 42 H 0.110 0.890 43 H 0.110 0.890 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.015 12.989 -17.574 37.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.100 4.100 3 C -0.204 4.204 4 N -0.211 5.211 5 C -0.042 4.042 6 C 0.077 3.923 7 H 0.101 0.899 8 C -0.191 4.191 9 N -0.307 5.307 10 C -0.066 4.066 11 C -0.151 4.151 12 C -0.002 4.002 13 N -0.367 5.367 14 C 0.318 3.682 15 O -0.446 6.446 16 C -0.281 4.281 17 S 0.075 5.925 18 C -0.696 4.696 19 H 0.101 0.899 20 C -0.190 4.190 21 N -0.548 5.548 22 Si 0.820 3.180 23 H -0.187 1.187 24 H -0.204 1.204 25 H -0.187 1.187 26 O -0.103 6.103 27 H 0.116 0.884 28 H 0.133 0.867 29 H 0.102 0.898 30 H 0.222 0.778 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.102 0.898 34 H 0.166 0.834 35 H 0.061 0.939 36 H 0.105 0.895 37 H 0.103 0.897 38 H 0.097 0.903 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.254 0.746 42 H 0.128 0.872 43 H 0.128 0.872 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -28.918 11.431 -18.517 36.191 hybrid contribution -0.468 1.084 1.700 2.070 sum -29.386 12.515 -16.817 36.097 Atomic orbital electron populations 1.20514 0.81036 1.05801 1.05081 1.24310 0.96600 0.83913 1.05147 1.23627 0.87364 1.01814 1.07620 1.70418 1.23975 1.09585 1.17127 1.26515 0.84510 0.90624 1.02532 1.19880 0.82593 0.93360 0.96460 0.89948 1.21786 1.01326 1.03289 0.92669 1.60521 1.21654 1.30040 1.18474 1.21948 0.94364 0.92013 0.98237 1.21575 0.96943 0.97406 0.99145 1.21308 0.90531 0.96937 0.91412 1.45744 1.33527 1.13220 1.44215 1.20070 0.81136 0.86013 0.81006 1.90689 1.72310 1.18201 1.63390 1.23380 1.00023 1.03579 1.01164 1.85563 1.38001 1.14677 1.54291 1.23186 1.20048 0.97899 1.28495 0.89892 1.26121 0.98112 0.96144 0.98663 1.70176 1.31930 1.10775 1.41889 0.85007 0.77412 0.77850 0.77742 1.18661 1.20376 1.18670 1.84397 1.18078 1.37691 1.70125 0.88449 0.86693 0.89758 0.77841 0.91536 0.92268 0.89770 0.83421 0.93862 0.89510 0.89653 0.90300 0.92370 0.92115 0.74623 0.87180 0.87194 0.91986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.27 10.43 71.24 0.74 0.47 16 2 C -0.05 -0.61 7.39 24.79 0.18 -0.43 16 3 C -0.07 -0.99 11.80 83.40 0.98 -0.01 16 4 N -0.48 -9.65 11.27 -303.82 -3.43 -13.08 16 5 C 0.17 2.95 6.84 88.34 0.60 3.56 16 6 C 0.19 2.61 3.16 44.17 0.14 2.75 16 7 H 0.08 0.95 7.80 -2.39 -0.02 0.93 16 8 C -0.13 -1.68 9.40 71.98 0.68 -1.00 16 9 N -0.67 -9.45 6.29 -495.44 -3.12 -12.56 16 10 C 0.06 0.78 5.48 86.31 0.47 1.25 16 11 C -0.11 -1.50 5.59 30.60 0.17 -1.33 16 12 C 0.12 2.52 5.67 86.38 0.49 3.01 16 13 N -0.71 -17.51 5.56 -463.07 -2.57 -20.08 16 14 C 0.53 19.61 7.85 87.66 0.69 20.30 16 15 O -0.57 -26.40 15.86 -3.05 -0.05 -26.45 16 16 C -0.13 -5.16 6.16 71.24 0.44 -4.73 16 17 S -0.15 -8.52 20.57 -56.49 -1.16 -9.69 16 18 C -0.55 -31.48 9.50 67.96 0.65 -30.83 16 19 H 0.08 4.40 7.80 -2.92 -0.02 4.38 16 20 C 0.01 0.82 5.49 84.86 0.47 1.29 16 21 N -0.91 -56.22 13.22 21.65 0.29 -55.94 16 22 Si 1.00 43.65 29.55 68.60 2.03 45.68 16 23 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 24 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 25 H -0.26 -10.87 7.11 99.48 0.71 -10.17 16 26 O -0.22 -3.77 10.78 -3.76 -0.04 -3.81 16 27 H 0.10 0.19 8.14 -2.39 -0.02 0.17 16 28 H 0.11 -0.03 8.14 -2.39 -0.02 -0.05 16 29 H 0.08 0.28 8.14 -2.38 -0.02 0.26 16 30 H 0.20 1.85 8.06 -2.91 -0.02 1.82 16 31 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.08 0.88 7.45 -2.39 -0.02 0.86 16 34 H 0.35 5.09 8.35 -89.70 -0.75 4.34 16 35 H 0.04 0.50 8.06 -2.38 -0.02 0.48 16 36 H 0.09 1.02 7.44 -2.39 -0.02 1.01 16 37 H 0.08 1.14 8.14 -2.39 -0.02 1.13 16 38 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.42 7.35 8.47 -92.71 -0.79 6.57 16 42 H 0.11 3.92 8.14 -2.40 -0.02 3.90 16 43 H 0.11 3.91 8.14 -2.40 -0.02 3.89 16 44 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 Total: -1.00 -81.55 390.48 -1.86 -83.41 By element: Atomic # 1 Polarization: 18.72 SS G_CDS: -0.52 Total: 18.20 kcal Atomic # 6 Polarization: -12.40 SS G_CDS: 6.70 Total: -5.69 kcal Atomic # 7 Polarization: -92.83 SS G_CDS: -8.83 Total: -101.65 kcal Atomic # 8 Polarization: -30.17 SS G_CDS: -0.09 Total: -30.26 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Atomic # 16 Polarization: -8.52 SS G_CDS: -1.16 Total: -9.69 kcal Total: -81.55 -1.86 -83.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154809070.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.889 kcal (2) G-P(sol) polarization free energy of solvation -81.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds