Wall clock time and date at job start Tue Mar 31 2020 15:37:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30260 * 125.62097 * 2 1 4 4 C 1.34472 * 108.70187 * 179.77615 * 3 2 1 5 5 C 1.50703 * 126.16636 * 180.27210 * 4 3 2 6 6 C 1.34332 * 107.66866 * 0.39655 * 4 3 2 7 7 C 1.50704 * 126.44270 * 179.87873 * 6 4 3 8 8 N 1.46895 * 109.47030 * 89.70998 * 7 6 4 9 9 C 1.46906 * 110.99789 * 179.97438 * 8 7 6 10 10 C 1.53002 * 109.47053 * 179.97438 * 9 8 7 11 11 C 1.52996 * 109.46891 * 179.97438 * 10 9 8 12 12 N 1.46499 * 109.47185 * 180.02562 * 11 10 9 13 13 C 1.34777 * 120.00580 * 180.02562 * 12 11 10 14 14 O 1.21285 * 119.99463 * 0.02562 * 13 12 11 15 15 C 1.50695 * 120.00450 * 179.97438 * 13 12 11 16 16 S 1.80999 * 109.47245 * 179.97438 * 15 13 12 17 17 C 1.76204 * 100.00185 * 180.02562 * 16 15 13 18 18 H 1.08000 * 119.99828 * 0.02562 * 17 16 15 19 19 C 1.38798 * 120.00099 * 180.02562 * 17 16 15 20 20 N 1.31629 * 119.99878 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 119.99799 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.47037 * 90.00013 * 21 19 17 23 23 H 1.48503 * 109.46955 * 209.99776 * 21 19 17 24 24 H 1.48497 * 109.47728 * 329.99954 * 21 19 17 25 25 O 1.33962 * 125.62002 * 180.02562 * 2 1 3 26 26 H 1.09000 * 109.47519 * 269.97434 * 1 2 3 27 27 H 1.09008 * 109.46738 * 29.97537 * 1 2 3 28 28 H 1.08994 * 109.47079 * 149.97331 * 1 2 3 29 29 H 1.09004 * 109.46978 * 270.14330 * 5 4 3 30 30 H 1.08999 * 109.46771 * 30.14470 * 5 4 3 31 31 H 1.09002 * 109.47479 * 150.14786 * 5 4 3 32 32 H 1.08996 * 109.46908 * 329.70816 * 7 6 4 33 33 H 1.09002 * 109.46622 * 209.70990 * 7 6 4 34 34 H 1.00899 * 111.00672 * 56.04735 * 8 7 6 35 35 H 1.08992 * 109.47459 * 299.99826 * 9 8 7 36 36 H 1.09004 * 109.47040 * 59.99976 * 9 8 7 37 37 H 1.09001 * 109.47142 * 300.00160 * 10 9 8 38 38 H 1.09004 * 109.47006 * 60.00213 * 10 9 8 39 39 H 1.09001 * 109.47372 * 300.00036 * 11 10 9 40 40 H 1.09004 * 109.47108 * 60.00292 * 11 10 9 41 41 H 0.97002 * 120.00016 * 359.97438 * 12 11 10 42 42 H 1.09001 * 109.47545 * 300.00424 * 15 13 12 43 43 H 1.09004 * 109.46897 * 60.00102 * 15 13 12 44 44 H 0.97001 * 119.99673 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0589 0.0000 4 6 3.5521 0.6675 0.0050 5 6 4.7570 1.5727 0.0125 6 6 3.5697 -0.6757 -0.0008 7 6 4.7937 -1.5549 -0.0008 8 7 5.1912 -1.8409 1.3841 9 6 6.3835 -2.6982 1.4233 10 6 6.7666 -2.9729 2.8789 11 6 8.0079 -3.8663 2.9196 12 7 8.3744 -4.1299 4.3133 13 6 9.4445 -4.8994 4.5948 14 8 10.1044 -5.3732 3.6943 15 6 9.8218 -5.1700 6.0285 16 16 11.2903 -6.2270 6.0767 17 6 11.5011 -6.3787 7.8195 18 1 10.8146 -5.8851 8.4914 19 6 12.5494 -7.1325 8.3288 20 7 13.3863 -7.7337 7.5098 21 14 12.7732 -7.2927 10.1763 22 1 12.0149 -8.4717 10.6665 23 1 14.2148 -7.4672 10.4870 24 1 12.2678 -6.0665 10.8444 25 8 2.2872 -1.0890 -0.0005 26 1 -0.3634 -0.0005 1.0276 27 1 -0.3633 0.8903 -0.5135 28 1 -0.3633 -0.8897 -0.5142 29 1 5.0507 1.7953 -1.0134 30 1 4.5114 2.5002 0.5296 31 1 5.5806 1.0772 0.5267 32 1 5.6080 -1.0440 -0.5144 33 1 4.5695 -2.4896 -0.5149 34 1 4.4304 -2.2565 1.9003 35 1 6.1701 -3.6407 0.9193 36 1 7.2091 -2.1955 0.9193 37 1 6.9802 -2.0302 3.3825 38 1 5.9411 -3.4754 3.3831 39 1 7.7939 -4.8090 2.4160 40 1 8.8336 -3.3642 2.4152 41 1 7.8473 -3.7501 5.0335 42 1 10.0354 -4.2273 6.5322 43 1 8.9962 -5.6724 6.5327 44 1 14.1187 -8.2608 7.8657 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154814444.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:32 Heat of formation + Delta-G solvation = -59.739098 kcal Electronic energy + Delta-G solvation = -23428.608887 eV Core-core repulsion = 19700.087631 eV Total energy + Delta-G solvation = -3728.521256 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.36667 -40.60074 -38.08522 -36.26211 -36.08313 -34.58216 -34.04997 -32.54424 -30.74779 -30.15287 -28.64242 -27.65714 -25.69021 -24.14089 -22.78172 -22.59197 -21.69600 -21.51257 -19.81378 -17.94850 -17.87147 -17.55497 -17.35208 -17.16311 -16.87416 -16.63788 -15.94921 -15.72019 -15.47566 -15.42027 -14.87941 -14.65294 -14.42252 -14.19205 -13.99530 -13.85584 -13.67191 -13.56243 -13.44687 -13.16282 -13.15305 -12.89854 -12.88264 -12.77851 -12.55203 -12.45584 -11.90331 -11.87774 -11.72311 -11.53674 -11.13891 -10.96092 -10.27362 -10.10451 -9.69345 -9.44152 -8.66435 -8.34350 -6.12523 0.36247 1.27711 1.42997 1.47690 1.57150 1.59329 1.62051 1.66919 2.26406 2.30716 2.99943 3.04999 3.19267 3.33472 3.67468 3.87172 3.94567 4.01491 4.05769 4.20038 4.22104 4.31100 4.35444 4.52043 4.52311 4.56091 4.61026 4.67896 4.70716 4.74676 4.78697 4.83814 4.93157 5.04426 5.16022 5.18268 5.19355 5.42274 5.43674 5.46911 5.82794 6.20215 6.22302 6.52271 6.72681 7.07061 7.25754 8.74932 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.033141 B = 0.001410 C = 0.001394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.668242 B =19846.368165 C =20086.750961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.188 3.812 3 N -0.520 5.520 4 C -0.008 4.008 5 C -0.070 4.070 6 C -0.065 4.065 7 C 0.153 3.847 8 N -0.687 5.687 9 C 0.066 3.934 10 C -0.113 4.113 11 C 0.122 3.878 12 N -0.713 5.713 13 C 0.532 3.468 14 O -0.567 6.567 15 C -0.130 4.130 16 S -0.153 6.153 17 C -0.547 4.547 18 H 0.083 0.917 19 C 0.014 3.986 20 N -0.911 5.911 21 Si 0.999 3.001 22 H -0.268 1.268 23 H -0.278 1.278 24 H -0.258 1.258 25 O -0.214 6.214 26 H 0.108 0.892 27 H 0.109 0.891 28 H 0.106 0.894 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.091 0.909 32 H 0.120 0.880 33 H 0.057 0.943 34 H 0.346 0.654 35 H 0.042 0.958 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.057 0.943 40 H 0.060 0.940 41 H 0.417 0.583 42 H 0.110 0.890 43 H 0.110 0.890 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.921 17.414 -14.836 35.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.018 4.018 3 N -0.251 5.251 4 C -0.128 4.128 5 C -0.127 4.127 6 C -0.117 4.117 7 C 0.024 3.976 8 N -0.319 5.319 9 C -0.063 4.063 10 C -0.151 4.151 11 C -0.003 4.003 12 N -0.367 5.367 13 C 0.318 3.682 14 O -0.446 6.446 15 C -0.281 4.281 16 S 0.074 5.926 17 C -0.695 4.695 18 H 0.101 0.899 19 C -0.191 4.191 20 N -0.548 5.548 21 Si 0.820 3.180 22 H -0.193 1.193 23 H -0.203 1.203 24 H -0.182 1.182 25 O -0.102 6.102 26 H 0.126 0.874 27 H 0.128 0.872 28 H 0.125 0.875 29 H 0.102 0.898 30 H 0.089 0.911 31 H 0.109 0.891 32 H 0.138 0.862 33 H 0.075 0.925 34 H 0.164 0.836 35 H 0.060 0.940 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.097 0.903 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.254 0.746 42 H 0.128 0.872 43 H 0.128 0.872 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -25.580 17.688 -16.314 35.120 hybrid contribution -0.663 -1.132 1.906 2.314 sum -26.244 16.557 -14.408 34.212 Atomic orbital electron populations 1.20526 0.78368 1.06424 1.06076 1.27179 0.97888 0.78134 0.98632 1.70394 1.02638 1.31473 1.20614 1.21965 0.93647 0.92973 1.04209 1.20207 0.91542 0.97525 1.03469 1.23314 0.83584 0.95150 1.09663 1.20305 0.89453 0.96726 0.91134 1.60490 1.08733 1.50495 1.12214 1.21829 0.92953 0.95290 0.96271 1.21590 0.96003 1.00010 0.97531 1.21318 0.97636 0.99483 0.81816 1.45745 1.29506 1.51620 1.09844 1.20070 0.80333 0.77841 0.89990 1.90691 1.53167 1.51819 1.48920 1.23380 1.03102 1.04910 0.96749 1.85571 1.32785 1.63714 1.10515 1.23217 1.17360 1.37432 0.91515 0.89885 1.26121 0.94215 0.93996 1.04740 1.70185 1.15877 1.31362 1.37358 0.84951 0.77684 0.79227 0.76100 1.19305 1.20299 1.18204 1.84369 1.17109 1.38258 1.70434 0.87395 0.87212 0.87544 0.89803 0.91098 0.89061 0.86250 0.92490 0.83638 0.93978 0.89637 0.89698 0.90252 0.92444 0.92179 0.74621 0.87180 0.87183 0.91991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.35 10.51 71.24 0.75 0.40 16 2 C 0.19 3.07 8.34 88.34 0.74 3.81 16 3 N -0.52 -10.76 11.29 -291.98 -3.30 -14.06 16 4 C -0.01 -0.15 7.11 41.26 0.29 0.15 16 5 C -0.07 -0.92 10.05 71.24 0.72 -0.21 16 6 C -0.06 -1.07 6.90 24.79 0.17 -0.90 16 7 C 0.15 1.71 5.84 85.56 0.50 2.21 16 8 N -0.69 -7.75 6.49 -517.93 -3.36 -11.11 16 9 C 0.07 0.69 5.68 86.30 0.49 1.18 16 10 C -0.11 -1.34 5.59 30.59 0.17 -1.17 16 11 C 0.12 2.40 5.67 86.38 0.49 2.89 16 12 N -0.71 -16.95 5.56 -463.06 -2.57 -19.52 16 13 C 0.53 19.29 7.85 87.66 0.69 19.98 16 14 O -0.57 -26.13 15.86 -3.05 -0.05 -26.18 16 15 C -0.13 -5.09 6.16 71.23 0.44 -4.66 16 16 S -0.15 -8.49 20.57 -56.49 -1.16 -9.66 16 17 C -0.55 -31.23 9.50 67.95 0.65 -30.58 16 18 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 19 C 0.01 0.80 5.49 84.86 0.47 1.26 16 20 N -0.91 -55.98 13.22 21.65 0.29 -55.69 16 21 Si 1.00 43.44 29.55 68.60 2.03 45.47 16 22 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 23 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 24 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 25 O -0.21 -3.79 10.77 -3.68 -0.04 -3.83 16 26 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 27 H 0.11 0.48 8.14 -2.38 -0.02 0.46 16 28 H 0.11 0.26 8.14 -2.39 -0.02 0.24 16 29 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 30 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.09 1.01 7.80 -2.39 -0.02 0.99 16 32 H 0.12 1.02 7.81 -2.39 -0.02 1.00 16 33 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.35 3.91 8.72 -89.69 -0.78 3.13 16 35 H 0.04 0.43 8.14 -2.39 -0.02 0.41 16 36 H 0.09 0.87 8.14 -2.38 -0.02 0.85 16 37 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 39 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 41 H 0.42 6.99 8.47 -92.71 -0.79 6.20 16 42 H 0.11 3.86 8.14 -2.39 -0.02 3.85 16 43 H 0.11 3.85 8.14 -2.39 -0.02 3.83 16 44 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -82.40 392.24 -2.16 -84.56 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: -0.55 Total: 15.65 kcal Atomic # 6 Polarization: -12.19 SS G_CDS: 6.56 Total: -5.63 kcal Atomic # 7 Polarization: -91.44 SS G_CDS: -8.95 Total: -100.38 kcal Atomic # 8 Polarization: -29.92 SS G_CDS: -0.09 Total: -30.01 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Atomic # 16 Polarization: -8.49 SS G_CDS: -1.16 Total: -9.66 kcal Total: -82.40 -2.16 -84.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154814444.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.824 kcal (2) G-P(sol) polarization free energy of solvation -82.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds