Wall clock time and date at job start Tue Mar 31 2020 15:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30249 * 125.62006 * 2 1 4 4 C 1.34476 * 108.70140 * 180.18446 * 3 2 1 5 5 C 1.50704 * 126.16891 * 179.82241 * 4 3 2 6 6 N 1.46895 * 109.47030 * 269.69672 * 5 4 3 7 7 C 1.46906 * 110.99789 * 179.97438 * 6 5 4 8 8 C 1.53002 * 109.47053 * 179.97438 * 7 6 5 9 9 C 1.52996 * 109.46891 * 179.97438 * 8 7 6 10 10 N 1.46499 * 109.47185 * 180.02562 * 9 8 7 11 11 C 1.34777 * 120.00580 * 180.02562 * 10 9 8 12 12 O 1.21285 * 119.99463 * 0.02562 * 11 10 9 13 13 C 1.50695 * 120.00450 * 179.97438 * 11 10 9 14 14 S 1.80999 * 109.47245 * 179.97438 * 13 11 10 15 15 C 1.76204 * 100.00185 * 180.02562 * 14 13 11 16 16 H 1.08000 * 119.99828 * 0.02562 * 15 14 13 17 17 C 1.38798 * 120.00099 * 180.02562 * 15 14 13 18 18 N 1.31623 * 120.00036 * 179.97438 * 17 15 14 19 19 Si 1.86792 * 119.99974 * 359.97438 * 17 15 14 20 20 H 1.48502 * 109.47459 * 90.00040 * 19 17 15 21 21 H 1.48505 * 109.47285 * 210.00080 * 19 17 15 22 22 H 1.48506 * 109.47531 * 329.99954 * 19 17 15 23 23 C 1.34333 * 107.66429 * 359.56810 * 4 3 2 24 24 C 1.50704 * 126.44131 * 180.23669 * 23 4 3 25 25 O 1.33966 * 125.61333 * 179.70763 * 2 1 3 26 26 H 1.08998 * 109.47429 * 180.31603 * 1 2 3 27 27 H 1.09000 * 109.47071 * 300.31688 * 1 2 3 28 28 H 1.09008 * 109.46736 * 60.31292 * 1 2 3 29 29 H 1.08996 * 109.46908 * 149.69490 * 5 4 3 30 30 H 1.09002 * 109.46622 * 29.69664 * 5 4 3 31 31 H 1.00899 * 111.00672 * 56.04735 * 6 5 4 32 32 H 1.08992 * 109.47459 * 299.99826 * 7 6 5 33 33 H 1.09004 * 109.47040 * 59.99976 * 7 6 5 34 34 H 1.09001 * 109.47142 * 300.00160 * 8 7 6 35 35 H 1.09004 * 109.47006 * 60.00213 * 8 7 6 36 36 H 1.09001 * 109.47372 * 300.00036 * 9 8 7 37 37 H 1.09004 * 109.47108 * 60.00292 * 9 8 7 38 38 H 0.97002 * 120.00016 * 359.97438 * 10 9 8 39 39 H 1.09001 * 109.47545 * 300.00424 * 13 11 10 40 40 H 1.09004 * 109.46897 * 60.00102 * 13 11 10 41 41 H 0.97001 * 120.00241 * 179.97438 * 18 17 15 42 42 H 1.09002 * 109.46899 * 89.99732 * 24 23 4 43 43 H 1.08996 * 109.46962 * 209.99615 * 24 23 4 44 44 H 1.08997 * 109.47102 * 330.00345 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0588 0.0000 4 6 3.5522 0.6674 -0.0041 5 6 4.7571 1.5726 -0.0093 6 7 5.1481 1.8593 -1.3960 7 6 6.3219 2.7415 -1.4402 8 6 6.6987 3.0164 -2.8974 9 6 7.9207 3.9357 -2.9435 10 7 8.2812 4.1994 -4.3387 11 6 9.3346 4.9899 -4.6249 12 8 9.9845 5.4826 -3.7272 13 6 9.7057 5.2606 -6.0601 14 16 11.1513 6.3484 -6.1147 15 6 11.3585 6.4949 -7.8584 16 1 10.6825 5.9830 -8.5273 17 6 12.3903 7.2681 -8.3721 18 7 12.5454 7.3771 -9.6746 19 14 13.5590 8.1539 -7.2151 20 1 14.7103 7.2698 -6.9019 21 1 14.0508 9.3961 -7.8636 22 1 12.8450 8.5002 -5.9598 23 6 3.5697 -0.6757 0.0030 24 6 4.7936 -1.5550 0.0068 25 8 2.2871 -1.0891 0.0056 26 1 -0.3634 -1.0276 0.0057 27 1 -0.3633 0.5187 0.8871 28 1 -0.3633 0.5090 -0.8929 29 1 5.5823 1.0819 0.5069 30 1 4.5132 2.5051 0.4997 31 1 4.3785 2.2557 -1.9142 32 1 6.0885 3.6821 -0.9414 33 1 7.1581 2.2594 -0.9338 34 1 6.9322 2.0756 -3.3960 35 1 5.8626 3.4983 -3.4042 36 1 7.6867 4.8765 -2.4451 37 1 8.7570 3.4542 -2.4366 38 1 7.7621 3.8044 -5.0567 39 1 9.9393 4.3199 -6.5588 40 1 8.8695 5.7425 -6.5669 41 1 13.2663 7.9177 -10.0337 42 1 5.0894 -1.7615 1.0354 43 1 4.5690 -2.4925 -0.5019 44 1 5.6076 -1.0469 -0.5102 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154815205.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:10 Heat of formation + Delta-G solvation = -30.232000 kcal Electronic energy + Delta-G solvation = -23458.931902 eV Core-core repulsion = 19731.690170 eV Total energy + Delta-G solvation = -3727.241732 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.76579 -39.29265 -37.48653 -35.58658 -34.68912 -33.62670 -32.43240 -31.57044 -30.59441 -29.34142 -27.32726 -25.62145 -25.00607 -23.72461 -22.08147 -21.88614 -20.96060 -20.36044 -17.84938 -17.32757 -17.03957 -16.58668 -16.32149 -16.09185 -15.56079 -15.01306 -14.95460 -14.81972 -14.74545 -14.32375 -13.94449 -13.84277 -13.60746 -13.31212 -13.21568 -13.21204 -12.88273 -12.79207 -12.59288 -12.50791 -12.07002 -11.96033 -11.75249 -11.45879 -11.25420 -11.17104 -10.99871 -10.90159 -10.59319 -9.84950 -9.52025 -9.04479 -9.00904 -8.94833 -8.84135 -8.49117 -6.90861 -6.28106 -3.99792 1.00464 2.14360 2.23446 2.77556 2.99284 3.29588 3.34441 3.48776 3.51515 3.65555 3.93795 4.27914 4.31417 4.34097 4.62831 4.65503 4.70465 4.74968 4.85520 4.86288 4.88264 4.97550 5.00425 5.05342 5.11034 5.24048 5.25041 5.28507 5.33600 5.37079 5.51941 5.58523 5.65892 5.76692 5.86500 5.87550 5.93146 6.02933 6.46163 6.56518 6.86678 7.33201 7.62632 7.94952 8.42501 8.50636 9.18152 10.81146 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.037109 B = 0.001438 C = 0.001426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.354869 B =19463.470820 C =19628.831811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.184 3.816 3 N -0.479 5.479 4 C -0.016 4.016 5 C 0.143 3.857 6 N -0.685 5.685 7 C 0.062 3.938 8 C -0.128 4.128 9 C 0.123 3.877 10 N -0.737 5.737 11 C 0.530 3.470 12 O -0.521 6.521 13 C -0.124 4.124 14 S -0.142 6.142 15 C -0.522 4.522 16 H 0.088 0.912 17 C 0.096 3.904 18 N -0.881 5.881 19 Si 0.857 3.143 20 H -0.267 1.267 21 H -0.274 1.274 22 H -0.235 1.235 23 C -0.026 4.026 24 C -0.070 4.070 25 O -0.203 6.203 26 H 0.087 0.913 27 H 0.096 0.904 28 H 0.097 0.903 29 H 0.089 0.911 30 H 0.050 0.950 31 H 0.346 0.654 32 H 0.037 0.963 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.400 0.600 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.271 0.729 42 H 0.082 0.918 43 H 0.078 0.922 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.551 -18.841 21.128 36.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.023 4.023 3 N -0.209 5.209 4 C -0.136 4.136 5 C 0.013 3.987 6 N -0.317 5.317 7 C -0.068 4.068 8 C -0.167 4.167 9 C -0.002 4.002 10 N -0.391 5.391 11 C 0.316 3.684 12 O -0.395 6.395 13 C -0.275 4.275 14 S 0.084 5.916 15 C -0.669 4.669 16 H 0.106 0.894 17 C -0.113 4.113 18 N -0.517 5.517 19 Si 0.682 3.318 20 H -0.192 1.192 21 H -0.199 1.199 22 H -0.159 1.159 23 C -0.080 4.080 24 C -0.126 4.126 25 O -0.091 6.091 26 H 0.106 0.894 27 H 0.114 0.886 28 H 0.115 0.885 29 H 0.108 0.892 30 H 0.068 0.932 31 H 0.164 0.836 32 H 0.055 0.945 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.234 0.766 39 H 0.115 0.885 40 H 0.115 0.885 41 H 0.081 0.919 42 H 0.101 0.899 43 H 0.097 0.903 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -22.235 -17.933 22.429 36.319 hybrid contribution -0.648 -0.174 -0.973 1.182 sum -22.883 -18.107 21.456 36.220 Atomic orbital electron populations 1.20241 0.81282 1.04681 1.05068 1.26176 0.96364 0.78565 1.01167 1.70290 1.01703 1.30462 1.18413 1.21262 0.92710 0.92094 1.07493 1.20097 0.91577 0.96485 0.90519 1.60502 1.09224 1.49665 1.12323 1.21864 0.93456 0.94862 0.96578 1.21735 0.97652 1.00396 0.96883 1.21191 0.96601 0.99054 0.83326 1.45944 1.32772 1.52246 1.08183 1.20283 0.79404 0.77603 0.91135 1.90699 1.51113 1.49449 1.48271 1.23280 1.04172 1.04905 0.95129 1.84783 1.34372 1.61042 1.11421 1.22324 1.19302 1.36505 0.88802 0.89389 1.24707 0.96535 0.95086 0.94945 1.69936 1.31783 1.39011 1.10982 0.86733 0.82343 0.80080 0.82679 1.19202 1.19941 1.15935 1.23238 0.83741 0.95082 1.05915 1.20340 0.90260 0.98386 1.03654 1.84396 1.16720 1.37811 1.70153 0.89425 0.88572 0.88489 0.89227 0.93218 0.83595 0.94496 0.90297 0.90215 0.91305 0.91705 0.91479 0.76620 0.88470 0.88462 0.91950 0.89924 0.90317 0.88150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.21 10.51 36.01 0.38 0.17 16 2 C 0.18 1.53 8.34 -12.95 -0.11 1.42 16 3 N -0.48 -4.87 11.29 -7.36 -0.08 -4.95 16 4 C -0.02 -0.14 6.62 -82.81 -0.55 -0.69 16 5 C 0.14 1.06 5.84 -4.98 -0.03 1.03 16 6 N -0.69 -5.07 6.49 -115.06 -0.75 -5.81 16 7 C 0.06 0.43 5.68 -3.82 -0.02 0.41 16 8 C -0.13 -0.96 5.59 -26.73 -0.15 -1.11 16 9 C 0.12 1.30 5.67 -4.04 -0.02 1.28 16 10 N -0.74 -9.26 5.56 -60.30 -0.33 -9.59 16 11 C 0.53 9.45 7.85 -10.99 -0.09 9.36 16 12 O -0.52 -11.33 15.86 5.55 0.09 -11.24 16 13 C -0.12 -2.41 6.16 36.00 0.22 -2.19 16 14 S -0.14 -3.64 18.55 -107.50 -1.99 -5.63 16 15 C -0.52 -15.11 10.04 30.94 0.31 -14.80 16 16 H 0.09 2.65 8.03 -52.49 -0.42 2.23 16 17 C 0.10 2.82 5.50 -17.43 -0.10 2.72 16 18 N -0.88 -26.65 13.97 55.49 0.78 -25.88 16 19 Si 0.86 21.88 27.74 -169.99 -4.71 17.16 16 20 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.24 -6.01 6.74 56.52 0.38 -5.63 16 23 C -0.03 -0.21 7.39 -35.68 -0.26 -0.48 16 24 C -0.07 -0.34 10.04 36.01 0.36 0.02 16 25 O -0.20 -1.83 10.78 5.37 0.06 -1.77 16 26 H 0.09 0.18 8.14 -51.93 -0.42 -0.25 16 27 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.10 0.28 8.14 -51.92 -0.42 -0.15 16 29 H 0.09 0.53 7.79 -51.93 -0.40 0.13 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.35 2.73 8.72 -39.29 -0.34 2.39 16 32 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.40 3.88 8.47 -40.82 -0.35 3.53 16 39 H 0.10 1.75 8.14 -51.92 -0.42 1.32 16 40 H 0.10 1.75 8.14 -51.91 -0.42 1.33 16 41 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 42 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 43 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.10 0.46 7.80 -51.93 -0.40 0.06 16 LS Contribution 389.53 15.07 5.87 5.87 Total: -1.00 -36.57 389.53 -8.13 -44.70 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -6.99 Total: 0.01 kcal Atomic # 6 Polarization: -2.81 SS G_CDS: -0.05 Total: -2.86 kcal Atomic # 7 Polarization: -45.84 SS G_CDS: -0.39 Total: -46.23 kcal Atomic # 8 Polarization: -13.15 SS G_CDS: 0.15 Total: -13.01 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.71 Total: 17.16 kcal Atomic # 16 Polarization: -3.64 SS G_CDS: -1.99 Total: -5.63 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -36.57 -8.13 -44.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154815205.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.463 kcal (2) G-P(sol) polarization free energy of solvation -36.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds