Wall clock time and date at job start Tue Mar 31 2020 15:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30249 * 125.62006 * 2 1 4 4 C 1.34476 * 108.70140 * 180.18446 * 3 2 1 5 5 C 1.50704 * 126.16891 * 179.82241 * 4 3 2 6 6 N 1.46895 * 109.47030 * 269.69672 * 5 4 3 7 7 C 1.46906 * 110.99789 * 179.97438 * 6 5 4 8 8 C 1.53002 * 109.47053 * 179.97438 * 7 6 5 9 9 C 1.52996 * 109.46891 * 179.97438 * 8 7 6 10 10 N 1.46499 * 109.47185 * 180.02562 * 9 8 7 11 11 C 1.34777 * 120.00580 * 180.02562 * 10 9 8 12 12 O 1.21285 * 119.99463 * 0.02562 * 11 10 9 13 13 C 1.50695 * 120.00450 * 179.97438 * 11 10 9 14 14 S 1.80999 * 109.47245 * 179.97438 * 13 11 10 15 15 C 1.76204 * 100.00185 * 180.02562 * 14 13 11 16 16 H 1.08000 * 119.99828 * 0.02562 * 15 14 13 17 17 C 1.38798 * 120.00099 * 180.02562 * 15 14 13 18 18 N 1.31623 * 120.00036 * 179.97438 * 17 15 14 19 19 Si 1.86792 * 119.99974 * 359.97438 * 17 15 14 20 20 H 1.48502 * 109.47459 * 90.00040 * 19 17 15 21 21 H 1.48505 * 109.47285 * 210.00080 * 19 17 15 22 22 H 1.48506 * 109.47531 * 329.99954 * 19 17 15 23 23 C 1.34333 * 107.66429 * 359.56810 * 4 3 2 24 24 C 1.50704 * 126.44131 * 180.23669 * 23 4 3 25 25 O 1.33966 * 125.61333 * 179.70763 * 2 1 3 26 26 H 1.08998 * 109.47429 * 180.31603 * 1 2 3 27 27 H 1.09000 * 109.47071 * 300.31688 * 1 2 3 28 28 H 1.09008 * 109.46736 * 60.31292 * 1 2 3 29 29 H 1.08996 * 109.46908 * 149.69490 * 5 4 3 30 30 H 1.09002 * 109.46622 * 29.69664 * 5 4 3 31 31 H 1.00899 * 111.00672 * 56.04735 * 6 5 4 32 32 H 1.08992 * 109.47459 * 299.99826 * 7 6 5 33 33 H 1.09004 * 109.47040 * 59.99976 * 7 6 5 34 34 H 1.09001 * 109.47142 * 300.00160 * 8 7 6 35 35 H 1.09004 * 109.47006 * 60.00213 * 8 7 6 36 36 H 1.09001 * 109.47372 * 300.00036 * 9 8 7 37 37 H 1.09004 * 109.47108 * 60.00292 * 9 8 7 38 38 H 0.97002 * 120.00016 * 359.97438 * 10 9 8 39 39 H 1.09001 * 109.47545 * 300.00424 * 13 11 10 40 40 H 1.09004 * 109.46897 * 60.00102 * 13 11 10 41 41 H 0.97001 * 120.00241 * 179.97438 * 18 17 15 42 42 H 1.09002 * 109.46899 * 89.99732 * 24 23 4 43 43 H 1.08996 * 109.46962 * 209.99615 * 24 23 4 44 44 H 1.08997 * 109.47102 * 330.00345 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0588 0.0000 4 6 3.5522 0.6674 -0.0041 5 6 4.7571 1.5726 -0.0093 6 7 5.1481 1.8593 -1.3960 7 6 6.3219 2.7415 -1.4402 8 6 6.6987 3.0164 -2.8974 9 6 7.9207 3.9357 -2.9435 10 7 8.2812 4.1994 -4.3387 11 6 9.3346 4.9899 -4.6249 12 8 9.9845 5.4826 -3.7272 13 6 9.7057 5.2606 -6.0601 14 16 11.1513 6.3484 -6.1147 15 6 11.3585 6.4949 -7.8584 16 1 10.6825 5.9830 -8.5273 17 6 12.3903 7.2681 -8.3721 18 7 12.5454 7.3771 -9.6746 19 14 13.5590 8.1539 -7.2151 20 1 14.7103 7.2698 -6.9019 21 1 14.0508 9.3961 -7.8636 22 1 12.8450 8.5002 -5.9598 23 6 3.5697 -0.6757 0.0030 24 6 4.7936 -1.5550 0.0068 25 8 2.2871 -1.0891 0.0056 26 1 -0.3634 -1.0276 0.0057 27 1 -0.3633 0.5187 0.8871 28 1 -0.3633 0.5090 -0.8929 29 1 5.5823 1.0819 0.5069 30 1 4.5132 2.5051 0.4997 31 1 4.3785 2.2557 -1.9142 32 1 6.0885 3.6821 -0.9414 33 1 7.1581 2.2594 -0.9338 34 1 6.9322 2.0756 -3.3960 35 1 5.8626 3.4983 -3.4042 36 1 7.6867 4.8765 -2.4451 37 1 8.7570 3.4542 -2.4366 38 1 7.7621 3.8044 -5.0567 39 1 9.9393 4.3199 -6.5588 40 1 8.8695 5.7425 -6.5669 41 1 13.2663 7.9177 -10.0337 42 1 5.0894 -1.7615 1.0354 43 1 4.5690 -2.4925 -0.5019 44 1 5.6076 -1.0469 -0.5102 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154815205.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:09 Heat of formation + Delta-G solvation = -59.948239 kcal Electronic energy + Delta-G solvation = -23460.220495 eV Core-core repulsion = 19731.690170 eV Total energy + Delta-G solvation = -3728.530325 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.35601 -40.64389 -38.14579 -36.45448 -35.47696 -34.67148 -34.23119 -32.52198 -30.95060 -30.61198 -28.08993 -27.79535 -25.63065 -24.42070 -22.68680 -22.57422 -21.74554 -21.49132 -19.86326 -17.93297 -17.87871 -17.53819 -17.37233 -17.18791 -17.02818 -16.60626 -15.86570 -15.63929 -15.46711 -15.42423 -14.96973 -14.89482 -14.58935 -14.29542 -14.24710 -13.76591 -13.59636 -13.52559 -13.34875 -13.25344 -13.09075 -13.02223 -12.96667 -12.85833 -12.55415 -12.43365 -12.10163 -11.86579 -11.84864 -11.52753 -11.16730 -11.01124 -10.53462 -10.12767 -9.60380 -9.41454 -8.99404 -8.51265 -6.22213 0.42926 0.99643 1.31937 1.47237 1.52834 1.57050 1.57556 1.73242 2.22897 2.27263 2.72059 2.87104 2.99158 3.31908 3.72478 3.81725 3.85720 4.01834 4.15237 4.20565 4.24237 4.26619 4.36989 4.47946 4.52537 4.57394 4.62357 4.64351 4.65948 4.69541 4.77941 4.82597 4.92431 5.09671 5.16124 5.19574 5.21699 5.35222 5.44186 5.70941 5.91785 6.11609 6.26260 6.48234 6.73650 6.93988 7.20270 8.61144 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.037109 B = 0.001438 C = 0.001426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.354869 B =19463.470820 C =19628.831811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.178 3.822 3 N -0.512 5.512 4 C -0.036 4.036 5 C 0.147 3.853 6 N -0.684 5.684 7 C 0.065 3.935 8 C -0.113 4.113 9 C 0.123 3.877 10 N -0.712 5.712 11 C 0.533 3.467 12 O -0.565 6.565 13 C -0.112 4.112 14 S -0.177 6.177 15 C -0.530 4.530 16 H 0.062 0.938 17 C 0.046 3.954 18 N -0.917 5.917 19 Si 0.915 3.085 20 H -0.262 1.262 21 H -0.259 1.259 22 H -0.237 1.237 23 C -0.035 4.035 24 C -0.067 4.067 25 O -0.214 6.214 26 H 0.105 0.895 27 H 0.107 0.893 28 H 0.106 0.894 29 H 0.105 0.895 30 H 0.041 0.959 31 H 0.342 0.658 32 H 0.035 0.965 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.076 0.924 36 H 0.058 0.942 37 H 0.063 0.937 38 H 0.417 0.583 39 H 0.114 0.886 40 H 0.114 0.886 41 H 0.277 0.723 42 H 0.098 0.902 43 H 0.085 0.915 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.431 -19.957 22.297 38.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.029 4.029 3 N -0.243 5.243 4 C -0.155 4.155 5 C 0.018 3.982 6 N -0.315 5.315 7 C -0.064 4.064 8 C -0.151 4.151 9 C -0.001 4.001 10 N -0.366 5.366 11 C 0.319 3.681 12 O -0.443 6.443 13 C -0.263 4.263 14 S 0.050 5.950 15 C -0.678 4.678 16 H 0.080 0.920 17 C -0.159 4.159 18 N -0.555 5.555 19 Si 0.737 3.263 20 H -0.186 1.186 21 H -0.183 1.183 22 H -0.161 1.161 23 C -0.089 4.089 24 C -0.123 4.123 25 O -0.103 6.103 26 H 0.124 0.876 27 H 0.125 0.875 28 H 0.124 0.876 29 H 0.123 0.877 30 H 0.059 0.941 31 H 0.160 0.840 32 H 0.054 0.946 33 H 0.103 0.897 34 H 0.104 0.896 35 H 0.094 0.906 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.254 0.746 39 H 0.132 0.868 40 H 0.132 0.868 41 H 0.086 0.914 42 H 0.116 0.884 43 H 0.104 0.896 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -23.157 -19.083 23.584 38.165 hybrid contribution -0.548 0.054 -1.326 1.436 sum -23.705 -19.028 22.258 37.675 Atomic orbital electron populations 1.20479 0.78526 1.06207 1.05976 1.27075 0.97822 0.78095 0.99882 1.70285 1.02553 1.31579 1.19873 1.21549 0.92877 0.92822 1.08251 1.20109 0.91621 0.96031 0.90472 1.60510 1.09131 1.49568 1.12317 1.21824 0.93523 0.94886 0.96175 1.21591 0.96264 0.99842 0.97445 1.21321 0.97772 0.99412 0.81622 1.45741 1.30850 1.50092 1.09915 1.19961 0.80301 0.78134 0.89714 1.90689 1.53017 1.51651 1.48965 1.23279 1.01641 1.04233 0.97132 1.84707 1.38321 1.63435 1.08573 1.22471 1.18802 1.36015 0.90492 0.91960 1.25556 0.98111 0.95857 0.96374 1.70013 1.32835 1.40067 1.12568 0.85864 0.80281 0.79533 0.80666 1.18644 1.18311 1.16130 1.23822 0.84307 0.95450 1.05281 1.20462 0.88942 0.98128 1.04813 1.84409 1.17199 1.38261 1.70383 0.87606 0.87459 0.87569 0.87722 0.94071 0.84024 0.94631 0.89651 0.89580 0.90560 0.92409 0.91871 0.74585 0.86759 0.86825 0.91364 0.88370 0.89615 0.87685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.34 10.51 71.24 0.75 0.41 16 2 C 0.18 2.86 8.34 88.34 0.74 3.60 16 3 N -0.51 -10.32 11.29 -291.98 -3.30 -13.62 16 4 C -0.04 -0.64 6.62 41.26 0.27 -0.36 16 5 C 0.15 2.04 5.84 85.56 0.50 2.54 16 6 N -0.68 -9.08 6.49 -517.93 -3.36 -12.44 16 7 C 0.07 0.78 5.68 86.30 0.49 1.27 16 8 C -0.11 -1.40 5.59 30.59 0.17 -1.23 16 9 C 0.12 2.34 5.67 86.38 0.49 2.83 16 10 N -0.71 -16.16 5.56 -463.06 -2.57 -18.73 16 11 C 0.53 18.15 7.85 87.66 0.69 18.84 16 12 O -0.56 -24.10 15.86 -3.05 -0.05 -24.15 16 13 C -0.11 -4.18 6.16 71.23 0.44 -3.75 16 14 S -0.18 -8.96 18.55 -56.49 -1.05 -10.01 16 15 C -0.53 -30.96 10.04 67.95 0.68 -30.28 16 16 H 0.06 3.83 8.03 -2.91 -0.02 3.80 16 17 C 0.05 2.73 5.50 84.86 0.47 3.20 16 18 N -0.92 -55.92 13.97 21.65 0.30 -55.62 16 19 Si 0.91 45.10 27.74 68.60 1.90 47.00 16 20 H -0.26 -12.58 7.11 99.48 0.71 -11.87 16 21 H -0.26 -11.95 7.11 99.48 0.71 -11.25 16 22 H -0.24 -11.70 6.74 99.48 0.67 -11.03 16 23 C -0.03 -0.55 7.39 24.79 0.18 -0.37 16 24 C -0.07 -0.56 10.04 71.24 0.72 0.16 16 25 O -0.21 -3.72 10.78 -3.71 -0.04 -3.76 16 26 H 0.11 0.24 8.14 -2.39 -0.02 0.22 16 27 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 28 H 0.11 0.46 8.14 -2.38 -0.02 0.44 16 29 H 0.10 1.08 7.79 -2.39 -0.02 1.06 16 30 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.34 5.00 8.72 -89.69 -0.78 4.22 16 32 H 0.04 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.09 0.94 8.14 -2.38 -0.02 0.92 16 34 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 36 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 38 H 0.42 6.76 8.47 -92.71 -0.79 5.98 16 39 H 0.11 3.90 8.14 -2.39 -0.02 3.88 16 40 H 0.11 3.89 8.14 -2.39 -0.02 3.87 16 41 H 0.28 15.61 8.31 -92.71 -0.77 14.83 16 42 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 43 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 44 H 0.10 0.77 7.80 -2.39 -0.02 0.75 16 Total: -1.00 -79.61 389.53 -2.17 -81.78 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -0.59 Total: 12.69 kcal Atomic # 6 Polarization: -9.73 SS G_CDS: 6.58 Total: -3.15 kcal Atomic # 7 Polarization: -91.47 SS G_CDS: -8.93 Total: -100.40 kcal Atomic # 8 Polarization: -27.81 SS G_CDS: -0.09 Total: -27.90 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 1.90 Total: 47.00 kcal Atomic # 16 Polarization: -8.96 SS G_CDS: -1.05 Total: -10.01 kcal Total: -79.61 -2.17 -81.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154815205.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.829 kcal (2) G-P(sol) polarization free energy of solvation -79.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds