Wall clock time and date at job start Tue Mar 31 2020 16:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34230 * 117.00489 * 2 1 4 4 O 1.20827 * 119.99327 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00565 * 179.97438 * 3 2 1 6 6 C 1.52999 * 109.47285 * 205.00029 * 5 3 2 7 7 N 1.46509 * 109.46803 * 324.99816 * 5 3 2 8 8 C 1.38826 * 119.99549 * 302.35841 * 7 5 3 9 9 C 1.39964 * 119.97373 * 6.64772 * 8 7 5 10 10 N 1.32126 * 120.31618 * 179.97438 * 9 8 7 11 11 C 1.31933 * 120.27268 * 359.70950 * 10 9 8 12 12 C 1.40678 * 119.93473 * 0.57088 * 11 10 9 13 13 C 1.41274 * 120.16029 * 179.70749 * 12 11 10 14 14 H 1.08003 * 119.99661 * 6.06120 * 13 12 11 15 15 C 1.40051 * 120.00017 * 186.07049 * 13 12 11 16 16 N 1.30737 * 120.00064 * 183.05817 * 15 13 12 17 17 Si 1.86798 * 120.00229 * 3.05196 * 15 13 12 18 18 H 1.48501 * 109.47254 * 180.02562 * 17 15 13 19 19 H 1.48495 * 109.47117 * 300.00403 * 17 15 13 20 20 H 1.48498 * 109.46995 * 60.00263 * 17 15 13 21 21 N 1.32236 * 119.96630 * 186.62659 * 8 7 5 22 22 C 1.50693 * 109.47118 * 84.99535 * 5 3 2 23 23 C 1.38239 * 120.00053 * 265.48825 * 22 5 3 24 24 C 1.38237 * 119.99724 * 179.76957 * 23 22 5 25 25 C 1.38233 * 120.00298 * 0.50142 * 24 23 22 26 26 C 1.38235 * 119.99862 * 359.75669 * 25 24 23 27 27 C 1.38233 * 120.00185 * 359.97438 * 26 25 24 28 28 H 1.09000 * 109.47602 * 300.01001 * 1 2 3 29 29 H 1.09004 * 109.46584 * 60.00260 * 1 2 3 30 30 H 1.08994 * 109.47204 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46896 * 187.44821 * 6 5 3 32 32 H 1.09000 * 109.46838 * 307.44711 * 6 5 3 33 33 H 1.08992 * 109.47429 * 67.44931 * 6 5 3 34 34 H 0.96994 * 119.99643 * 122.36283 * 7 5 3 35 35 H 1.07998 * 119.83920 * 359.95891 * 9 8 7 36 36 H 1.07999 * 120.03276 * 180.29393 * 11 10 9 37 37 H 0.96998 * 119.99110 * 354.89556 * 16 15 13 38 38 H 1.07991 * 120.00024 * 359.97438 * 23 22 5 39 39 H 1.08002 * 119.99888 * 180.23570 * 24 23 22 40 40 H 1.08000 * 120.00422 * 179.72650 * 25 24 23 41 41 H 1.07998 * 119.99998 * 179.97438 * 26 25 24 42 42 H 1.07999 * 120.00276 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0070 2.6072 0.6101 7 7 4.1129 0.1706 0.7934 8 6 3.7442 0.0223 2.1235 9 6 2.7475 0.8401 2.6683 10 7 2.3910 0.7044 3.9333 11 6 2.9677 -0.2074 4.6927 12 6 3.9749 -1.0313 4.1581 13 6 4.5999 -2.0051 4.9687 14 1 4.2394 -2.1858 5.9706 15 6 5.6871 -2.7358 4.4731 16 7 6.2275 -3.6781 5.2006 17 14 6.3649 -2.3642 2.7726 18 1 7.5058 -3.2704 2.4855 19 1 5.3002 -2.5731 1.7588 20 1 6.8273 -0.9539 2.7214 21 7 4.3348 -0.8919 2.8746 22 6 4.0750 1.1771 -1.4145 23 6 4.4590 -0.0477 -1.9279 24 6 4.9212 -0.1380 -3.2276 25 6 5.0091 0.9978 -4.0105 26 6 4.6301 2.2234 -3.4954 27 6 4.1627 2.3129 -2.1976 28 1 -0.3634 0.5140 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 5.0843 2.7226 0.4910 32 1 3.4957 3.4254 0.1031 33 1 3.7550 2.6227 1.6704 34 1 4.7323 -0.4567 0.3888 35 1 2.2678 1.5858 2.0517 36 1 2.6700 -0.3181 5.7249 37 1 5.9246 -3.8217 6.1108 38 1 4.3949 -0.9343 -1.3148 39 1 5.2176 -1.0954 -3.6300 40 1 5.3743 0.9279 -5.0245 41 1 4.6991 3.1108 -4.1069 42 1 3.8670 3.2705 -1.7949 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160467670.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:59 Heat of formation + Delta-G solvation = -10.054383 kcal Electronic energy + Delta-G solvation = -28507.365068 eV Core-core repulsion = 24645.554352 eV Total energy + Delta-G solvation = -3861.810716 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.20082 -39.34983 -39.24119 -36.71066 -36.09585 -34.18829 -33.00000 -31.78282 -31.18826 -29.48657 -28.68831 -27.86233 -25.89839 -24.75703 -23.12609 -22.61706 -22.15124 -21.30714 -19.84817 -18.70998 -17.99005 -17.57418 -16.69773 -16.47130 -16.38281 -15.70911 -15.38356 -15.03719 -14.92289 -14.24787 -14.02293 -13.71007 -13.61486 -13.54512 -13.31774 -12.98185 -12.81369 -12.70206 -12.39768 -12.14379 -12.07709 -11.93340 -11.45050 -11.25420 -11.20888 -11.05909 -10.97315 -10.72760 -10.62127 -10.21577 -9.92351 -9.46201 -9.17685 -9.11427 -9.06798 -8.90523 -7.79055 -7.22958 -7.21696 -4.98709 1.00832 1.20546 2.22448 2.40907 2.61144 2.87135 3.35247 3.49872 3.59184 3.60327 3.90920 4.28379 4.30934 4.54425 4.66760 4.77756 4.81263 4.93751 4.99192 5.19162 5.26482 5.30599 5.37990 5.45354 5.56973 5.60534 5.66657 5.74929 5.78382 5.84646 5.87563 6.06734 6.17695 6.25784 6.28349 6.31164 6.43294 6.49753 6.68363 6.75180 7.16375 7.25523 7.39760 7.69735 7.83524 7.95506 8.16882 8.43043 8.93232 9.38912 9.81775 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.013114 B = 0.005074 C = 0.004129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2134.678920 B = 5516.836298 C = 6780.477974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.339 6.339 3 C 0.471 3.529 4 O -0.508 6.508 5 C 0.249 3.751 6 C -0.162 4.162 7 N -0.717 5.717 8 C 0.409 3.591 9 C -0.175 4.175 10 N -0.392 5.392 11 C -0.085 4.085 12 C 0.237 3.763 13 C -0.449 4.449 14 H 0.090 0.910 15 C 0.043 3.957 16 N -0.791 5.791 17 Si 1.151 2.849 18 H -0.330 1.330 19 H -0.278 1.278 20 H -0.291 1.291 21 N -0.591 5.591 22 C -0.094 4.094 23 C -0.099 4.099 24 C -0.117 4.117 25 C -0.112 4.112 26 C -0.121 4.121 27 C -0.097 4.097 28 H 0.065 0.935 29 H 0.059 0.941 30 H 0.099 0.901 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.404 0.596 35 H 0.128 0.872 36 H 0.137 0.863 37 H 0.286 0.714 38 H 0.131 0.869 39 H 0.128 0.872 40 H 0.124 0.876 41 H 0.126 0.874 42 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.592 7.087 -16.445 18.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.254 6.254 3 C 0.312 3.688 4 O -0.395 6.395 5 C 0.159 3.841 6 C -0.220 4.220 7 N -0.357 5.357 8 C 0.169 3.831 9 C -0.334 4.334 10 N -0.103 5.103 11 C -0.257 4.257 12 C 0.112 3.888 13 C -0.482 4.482 14 H 0.108 0.892 15 C -0.180 4.180 16 N -0.412 5.412 17 Si 0.986 3.014 18 H -0.263 1.263 19 H -0.206 1.206 20 H -0.219 1.219 21 N -0.323 5.323 22 C -0.094 4.094 23 C -0.117 4.117 24 C -0.135 4.135 25 C -0.130 4.130 26 C -0.139 4.139 27 C -0.115 4.115 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.117 0.883 31 H 0.097 0.903 32 H 0.100 0.900 33 H 0.105 0.895 34 H 0.242 0.758 35 H 0.145 0.855 36 H 0.155 0.845 37 H 0.098 0.902 38 H 0.149 0.851 39 H 0.146 0.854 40 H 0.142 0.858 41 H 0.144 0.856 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -1.891 7.009 -17.440 18.890 hybrid contribution -1.255 0.150 1.294 1.809 sum -3.147 7.159 -16.146 17.940 Atomic orbital electron populations 1.23257 0.76754 1.03603 1.02246 1.86592 1.22949 1.32743 1.83105 1.23930 0.91760 0.81800 0.71265 1.90647 1.66498 1.36354 1.46037 1.18675 0.85396 0.90384 0.89689 1.22403 1.02547 0.93513 1.03562 1.44299 1.51990 1.31183 1.08192 1.18954 0.89559 0.90328 0.84307 1.21995 1.07129 1.09697 0.94558 1.67541 1.22447 1.16111 1.04171 1.22862 1.03057 0.99849 0.99956 1.19157 0.90549 0.91704 0.87414 1.20829 1.11769 1.14658 1.00967 0.89228 1.27866 0.92783 0.89699 1.07633 1.70640 1.37683 1.22739 1.10146 0.81886 0.73037 0.74439 0.72037 1.26304 1.20591 1.21868 1.66864 1.33730 1.25057 1.06674 1.19446 1.02034 0.94749 0.93216 1.21107 0.97565 0.97219 0.95858 1.21164 0.99598 0.98923 0.93790 1.21248 0.99171 0.92753 0.99875 1.21133 0.99482 0.97974 0.95267 1.21097 0.98364 0.98017 0.94035 0.91671 0.92256 0.88284 0.90299 0.90044 0.89528 0.75771 0.85461 0.84537 0.90211 0.85087 0.85439 0.85813 0.85597 0.85073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.48 10.56 101.05 1.07 1.55 16 2 O -0.34 -5.82 9.97 -39.26 -0.39 -6.21 16 3 C 0.47 8.10 3.90 36.00 0.14 8.24 16 4 O -0.51 -9.16 15.25 -18.75 -0.29 -9.45 16 5 C 0.25 3.93 0.86 -134.12 -0.12 3.81 16 6 C -0.16 -2.39 7.21 37.16 0.27 -2.12 16 7 N -0.72 -13.24 4.77 -49.75 -0.24 -13.48 16 8 C 0.41 9.20 7.08 -155.02 -1.10 8.10 16 9 C -0.17 -3.98 8.32 -16.78 -0.14 -4.12 16 10 N -0.39 -9.52 10.47 -12.11 -0.13 -9.65 16 11 C -0.09 -2.10 10.97 -16.59 -0.18 -2.28 16 12 C 0.24 6.11 6.38 -84.83 -0.54 5.57 16 13 C -0.45 -11.75 9.59 -37.75 -0.36 -12.11 16 14 H 0.09 2.30 8.05 -52.48 -0.42 1.87 16 15 C 0.04 1.13 5.52 -17.34 -0.10 1.04 16 16 N -0.79 -20.63 13.65 55.55 0.76 -19.87 16 17 Si 1.15 27.22 25.57 -169.99 -4.35 22.87 16 18 H -0.33 -7.71 7.11 56.52 0.40 -7.31 16 19 H -0.28 -6.45 6.66 56.52 0.38 -6.07 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 N -0.59 -14.76 4.76 -10.14 -0.05 -14.80 16 22 C -0.09 -1.24 4.78 -104.62 -0.50 -1.74 16 23 C -0.10 -1.23 9.01 -39.58 -0.36 -1.58 16 24 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 25 C -0.11 -1.01 10.05 -39.58 -0.40 -1.41 16 26 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 27 C -0.10 -1.09 9.15 -39.58 -0.36 -1.45 16 28 H 0.06 0.93 8.13 -51.93 -0.42 0.51 16 29 H 0.06 0.71 8.13 -51.93 -0.42 0.28 16 30 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.08 1.04 8.13 -51.93 -0.42 0.62 16 32 H 0.08 1.05 6.38 -51.93 -0.33 0.72 16 33 H 0.09 1.49 5.46 -51.93 -0.28 1.20 16 34 H 0.40 7.08 6.60 -40.82 -0.27 6.81 16 35 H 0.13 2.76 3.93 -52.49 -0.21 2.55 16 36 H 0.14 3.08 8.06 -52.49 -0.42 2.66 16 37 H 0.29 7.09 8.72 -40.82 -0.36 6.73 16 38 H 0.13 1.67 6.48 -52.49 -0.34 1.33 16 39 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 40 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 41 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 42 H 0.13 1.33 6.48 -52.49 -0.34 0.99 16 LS Contribution 345.69 15.07 5.21 5.21 Total: -1.00 -30.86 345.69 -7.69 -38.55 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -4.75 Total: 8.45 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: -3.47 Total: -1.62 kcal Atomic # 7 Polarization: -58.15 SS G_CDS: 0.35 Total: -57.80 kcal Atomic # 8 Polarization: -14.98 SS G_CDS: -0.68 Total: -15.66 kcal Atomic # 14 Polarization: 27.22 SS G_CDS: -4.35 Total: 22.87 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.86 -7.69 -38.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160467670.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.494 kcal (2) G-P(sol) polarization free energy of solvation -30.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds