Wall clock time and date at job start Tue Mar 31 2020 16:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34230 * 117.00489 * 2 1 4 4 O 1.20827 * 119.99327 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00565 * 179.97438 * 3 2 1 6 6 C 1.52999 * 109.47285 * 205.00029 * 5 3 2 7 7 N 1.46509 * 109.46803 * 324.99816 * 5 3 2 8 8 C 1.38826 * 119.99549 * 302.35841 * 7 5 3 9 9 C 1.39964 * 119.97373 * 6.64772 * 8 7 5 10 10 N 1.32126 * 120.31618 * 179.97438 * 9 8 7 11 11 C 1.31933 * 120.27268 * 359.70950 * 10 9 8 12 12 C 1.40678 * 119.93473 * 0.57088 * 11 10 9 13 13 C 1.41274 * 120.16029 * 179.70749 * 12 11 10 14 14 H 1.08003 * 119.99661 * 6.06120 * 13 12 11 15 15 C 1.40051 * 120.00017 * 186.07049 * 13 12 11 16 16 N 1.30737 * 120.00064 * 183.05817 * 15 13 12 17 17 Si 1.86798 * 120.00229 * 3.05196 * 15 13 12 18 18 H 1.48501 * 109.47254 * 180.02562 * 17 15 13 19 19 H 1.48495 * 109.47117 * 300.00403 * 17 15 13 20 20 H 1.48498 * 109.46995 * 60.00263 * 17 15 13 21 21 N 1.32236 * 119.96630 * 186.62659 * 8 7 5 22 22 C 1.50693 * 109.47118 * 84.99535 * 5 3 2 23 23 C 1.38239 * 120.00053 * 265.48825 * 22 5 3 24 24 C 1.38237 * 119.99724 * 179.76957 * 23 22 5 25 25 C 1.38233 * 120.00298 * 0.50142 * 24 23 22 26 26 C 1.38235 * 119.99862 * 359.75669 * 25 24 23 27 27 C 1.38233 * 120.00185 * 359.97438 * 26 25 24 28 28 H 1.09000 * 109.47602 * 300.01001 * 1 2 3 29 29 H 1.09004 * 109.46584 * 60.00260 * 1 2 3 30 30 H 1.08994 * 109.47204 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46896 * 187.44821 * 6 5 3 32 32 H 1.09000 * 109.46838 * 307.44711 * 6 5 3 33 33 H 1.08992 * 109.47429 * 67.44931 * 6 5 3 34 34 H 0.96994 * 119.99643 * 122.36283 * 7 5 3 35 35 H 1.07998 * 119.83920 * 359.95891 * 9 8 7 36 36 H 1.07999 * 120.03276 * 180.29393 * 11 10 9 37 37 H 0.96998 * 119.99110 * 354.89556 * 16 15 13 38 38 H 1.07991 * 120.00024 * 359.97438 * 23 22 5 39 39 H 1.08002 * 119.99888 * 180.23570 * 24 23 22 40 40 H 1.08000 * 120.00422 * 179.72650 * 25 24 23 41 41 H 1.07998 * 119.99998 * 179.97438 * 26 25 24 42 42 H 1.07999 * 120.00276 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0070 2.6072 0.6101 7 7 4.1129 0.1706 0.7934 8 6 3.7442 0.0223 2.1235 9 6 2.7475 0.8401 2.6683 10 7 2.3910 0.7044 3.9333 11 6 2.9677 -0.2074 4.6927 12 6 3.9749 -1.0313 4.1581 13 6 4.5999 -2.0051 4.9687 14 1 4.2394 -2.1858 5.9706 15 6 5.6871 -2.7358 4.4731 16 7 6.2275 -3.6781 5.2006 17 14 6.3649 -2.3642 2.7726 18 1 7.5058 -3.2704 2.4855 19 1 5.3002 -2.5731 1.7588 20 1 6.8273 -0.9539 2.7214 21 7 4.3348 -0.8919 2.8746 22 6 4.0750 1.1771 -1.4145 23 6 4.4590 -0.0477 -1.9279 24 6 4.9212 -0.1380 -3.2276 25 6 5.0091 0.9978 -4.0105 26 6 4.6301 2.2234 -3.4954 27 6 4.1627 2.3129 -2.1976 28 1 -0.3634 0.5140 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 5.0843 2.7226 0.4910 32 1 3.4957 3.4254 0.1031 33 1 3.7550 2.6227 1.6704 34 1 4.7323 -0.4567 0.3888 35 1 2.2678 1.5858 2.0517 36 1 2.6700 -0.3181 5.7249 37 1 5.9246 -3.8217 6.1108 38 1 4.3949 -0.9343 -1.3148 39 1 5.2176 -1.0954 -3.6300 40 1 5.3743 0.9279 -5.0245 41 1 4.6991 3.1108 -4.1069 42 1 3.8670 3.2705 -1.7949 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160467670.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:58 Heat of formation + Delta-G solvation = -27.788185 kcal Electronic energy + Delta-G solvation = -28508.134064 eV Core-core repulsion = 24645.554352 eV Total energy + Delta-G solvation = -3862.579712 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.51895 -41.06466 -40.27941 -37.98148 -37.48927 -36.12899 -34.69204 -33.33105 -32.06631 -30.77831 -30.08764 -29.01351 -27.78216 -25.95981 -24.83273 -23.64803 -23.28429 -22.87088 -21.17234 -20.54194 -19.29937 -19.02844 -18.01846 -17.98361 -17.65133 -17.21951 -16.92104 -16.26088 -15.86182 -15.77557 -15.58298 -15.10159 -15.02366 -14.81625 -14.61069 -14.39662 -14.23028 -13.92914 -13.72889 -13.51097 -13.21344 -13.13080 -13.05941 -12.91340 -12.72597 -12.50680 -12.11901 -11.90506 -11.88052 -11.85861 -11.70975 -11.38428 -11.06964 -10.81829 -9.90086 -9.85405 -9.75043 -9.17848 -8.95565 -6.97673 0.15108 0.42574 0.47450 0.76037 0.94034 1.55002 1.62608 1.68138 1.88438 2.07476 2.40737 2.60126 2.78866 3.22729 3.44953 3.57698 3.67001 3.87067 3.97554 4.04819 4.05875 4.16393 4.19364 4.22600 4.26287 4.45473 4.52794 4.55386 4.57133 4.60426 4.70241 4.80540 4.91382 5.00665 5.09219 5.22584 5.27005 5.30006 5.46170 5.47966 5.56044 5.67390 5.82859 6.00325 6.13302 6.30898 6.52272 6.56361 7.03354 7.48236 7.83526 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.013114 B = 0.005074 C = 0.004129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2134.678920 B = 5516.836298 C = 6780.477974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.357 6.357 3 C 0.467 3.533 4 O -0.521 6.521 5 C 0.246 3.754 6 C -0.159 4.159 7 N -0.706 5.706 8 C 0.409 3.591 9 C -0.164 4.164 10 N -0.401 5.401 11 C -0.104 4.104 12 C 0.228 3.772 13 C -0.472 4.472 14 H 0.083 0.917 15 C 0.021 3.979 16 N -0.808 5.808 17 Si 1.180 2.820 18 H -0.325 1.325 19 H -0.274 1.274 20 H -0.296 1.296 21 N -0.605 5.605 22 C -0.113 4.113 23 C -0.117 4.117 24 C -0.119 4.119 25 C -0.106 4.106 26 C -0.117 4.117 27 C -0.104 4.104 28 H 0.053 0.947 29 H 0.076 0.924 30 H 0.123 0.877 31 H 0.093 0.907 32 H 0.100 0.900 33 H 0.059 0.941 34 H 0.408 0.592 35 H 0.140 0.860 36 H 0.149 0.851 37 H 0.288 0.712 38 H 0.119 0.881 39 H 0.148 0.852 40 H 0.156 0.844 41 H 0.156 0.844 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.344 8.176 -19.686 21.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.272 6.272 3 C 0.309 3.691 4 O -0.410 6.410 5 C 0.157 3.843 6 C -0.217 4.217 7 N -0.345 5.345 8 C 0.167 3.833 9 C -0.325 4.325 10 N -0.112 5.112 11 C -0.273 4.273 12 C 0.103 3.897 13 C -0.506 4.506 14 H 0.102 0.898 15 C -0.199 4.199 16 N -0.429 5.429 17 Si 1.012 2.988 18 H -0.258 1.258 19 H -0.202 1.202 20 H -0.224 1.224 21 N -0.338 5.338 22 C -0.113 4.113 23 C -0.136 4.136 24 C -0.137 4.137 25 C -0.123 4.123 26 C -0.135 4.135 27 C -0.123 4.123 28 H 0.072 0.928 29 H 0.094 0.906 30 H 0.141 0.859 31 H 0.112 0.888 32 H 0.118 0.882 33 H 0.078 0.922 34 H 0.248 0.752 35 H 0.157 0.843 36 H 0.167 0.833 37 H 0.099 0.901 38 H 0.137 0.863 39 H 0.165 0.835 40 H 0.173 0.827 41 H 0.173 0.827 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -1.650 8.091 -20.685 22.272 hybrid contribution -1.438 -0.066 2.112 2.556 sum -3.088 8.026 -18.572 20.466 Atomic orbital electron populations 1.23521 0.75080 1.05369 1.02518 1.86576 1.24800 1.32877 1.82940 1.24208 0.92338 0.81671 0.70855 1.90629 1.66918 1.36638 1.46775 1.18927 0.84631 0.89571 0.91220 1.22393 1.03778 0.93696 1.01790 1.44433 1.51383 1.31902 1.06734 1.19135 0.89047 0.89440 0.85672 1.22269 1.06613 1.09379 0.94252 1.67562 1.22680 1.16125 1.04810 1.23001 1.03417 1.00188 1.00721 1.19295 0.90780 0.91739 0.87934 1.20846 1.12726 1.15863 1.01133 0.89845 1.28490 0.92857 0.89526 1.09060 1.70645 1.38357 1.23422 1.10525 0.81514 0.72838 0.73941 0.70462 1.25764 1.20198 1.22413 1.66887 1.34324 1.25984 1.06649 1.19329 1.04080 0.96017 0.91913 1.21130 0.98895 0.96538 0.97019 1.21442 0.98849 1.00506 0.92878 1.21664 0.97581 0.92037 1.01045 1.21509 0.98004 0.99361 0.94594 1.21269 0.98585 0.97593 0.94826 0.92811 0.90558 0.85909 0.88808 0.88176 0.92217 0.75202 0.84260 0.83339 0.90087 0.86322 0.83469 0.82658 0.82676 0.84346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 10.56 113.37 1.20 1.93 16 2 O -0.36 -11.94 9.97 -51.41 -0.51 -12.46 16 3 C 0.47 15.58 3.90 71.23 0.28 15.86 16 4 O -0.52 -18.22 15.25 21.96 0.33 -17.89 16 5 C 0.25 7.47 0.86 2.11 0.00 7.47 16 6 C -0.16 -4.47 7.21 71.98 0.52 -3.95 16 7 N -0.71 -25.55 4.77 -311.32 -1.49 -27.03 16 8 C 0.41 18.25 7.08 133.38 0.94 19.20 16 9 C -0.16 -7.44 8.32 85.07 0.71 -6.74 16 10 N -0.40 -19.46 10.47 -192.23 -2.01 -21.47 16 11 C -0.10 -5.14 10.97 85.27 0.94 -4.21 16 12 C 0.23 11.92 6.38 40.15 0.26 12.17 16 13 C -0.47 -25.22 9.59 23.46 0.22 -25.00 16 14 H 0.08 4.42 8.05 -2.91 -0.02 4.39 16 15 C 0.02 1.09 5.52 85.30 0.47 1.56 16 16 N -0.81 -42.57 13.65 21.84 0.30 -42.27 16 17 Si 1.18 55.16 25.57 68.60 1.75 56.92 16 18 H -0.32 -14.76 7.11 99.48 0.71 -14.05 16 19 H -0.27 -12.52 6.66 99.48 0.66 -11.86 16 20 H -0.30 -13.95 7.11 99.48 0.71 -13.25 16 21 N -0.61 -30.19 4.76 -186.00 -0.89 -31.08 16 22 C -0.11 -2.78 4.78 -19.87 -0.10 -2.87 16 23 C -0.12 -2.71 9.01 22.27 0.20 -2.51 16 24 C -0.12 -2.04 10.05 22.27 0.22 -1.82 16 25 C -0.11 -1.46 10.05 22.27 0.22 -1.23 16 26 C -0.12 -1.72 10.05 22.27 0.22 -1.49 16 27 C -0.10 -2.06 9.15 22.27 0.20 -1.85 16 28 H 0.05 1.51 8.13 -2.39 -0.02 1.49 16 29 H 0.08 1.70 8.13 -2.38 -0.02 1.68 16 30 H 0.12 2.54 8.14 -2.39 -0.02 2.52 16 31 H 0.09 2.32 8.13 -2.39 -0.02 2.30 16 32 H 0.10 2.41 6.38 -2.39 -0.02 2.39 16 33 H 0.06 2.00 5.46 -2.39 -0.01 1.99 16 34 H 0.41 14.05 6.60 -92.71 -0.61 13.44 16 35 H 0.14 5.97 3.93 -2.91 -0.01 5.96 16 36 H 0.15 6.80 8.06 -2.91 -0.02 6.78 16 37 H 0.29 14.53 8.72 -92.71 -0.81 13.72 16 38 H 0.12 2.94 6.48 -2.92 -0.02 2.92 16 39 H 0.15 1.87 8.06 -2.91 -0.02 1.84 16 40 H 0.16 1.17 8.06 -2.91 -0.02 1.15 16 41 H 0.16 1.36 8.06 -2.91 -0.02 1.33 16 42 H 0.14 2.43 6.48 -2.91 -0.02 2.41 16 Total: -1.00 -65.99 345.69 4.39 -61.60 By element: Atomic # 1 Polarization: 26.77 SS G_CDS: 0.38 Total: 27.15 kcal Atomic # 6 Polarization: 0.01 SS G_CDS: 6.52 Total: 6.52 kcal Atomic # 7 Polarization: -117.77 SS G_CDS: -4.09 Total: -121.85 kcal Atomic # 8 Polarization: -30.17 SS G_CDS: -0.18 Total: -30.34 kcal Atomic # 14 Polarization: 55.16 SS G_CDS: 1.75 Total: 56.92 kcal Total: -65.99 4.39 -61.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160467670.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.816 kcal (2) G-P(sol) polarization free energy of solvation -65.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds