Wall clock time and date at job start Tue Mar 31 2020 16:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45189 * 1 3 3 C 1.34233 * 117.00183 * 2 1 4 4 O 1.20820 * 119.99936 * 0.02562 * 3 2 1 5 5 C 1.50701 * 120.00067 * 180.02562 * 3 2 1 6 6 C 1.52999 * 109.46807 * 154.99767 * 5 3 2 7 7 N 1.46499 * 109.47115 * 35.00226 * 5 3 2 8 8 C 1.38818 * 120.00419 * 54.15465 * 7 5 3 9 9 C 1.39969 * 119.97143 * 359.15411 * 8 7 5 10 10 N 1.32121 * 120.32092 * 180.02562 * 9 8 7 11 11 C 1.31937 * 120.27400 * 359.66362 * 10 9 8 12 12 C 1.40682 * 119.92670 * 0.61192 * 11 10 9 13 13 C 1.41281 * 120.15400 * 179.68957 * 12 11 10 14 14 H 1.07997 * 119.99838 * 6.35237 * 13 12 11 15 15 C 1.40053 * 119.99745 * 186.35943 * 13 12 11 16 16 N 1.30732 * 119.99544 * 181.29300 * 15 13 12 17 17 Si 1.86802 * 120.00369 * 1.29041 * 15 13 12 18 18 H 1.48501 * 109.47017 * 180.02562 * 17 15 13 19 19 H 1.48503 * 109.46824 * 300.00499 * 17 15 13 20 20 H 1.48496 * 109.46851 * 60.00203 * 17 15 13 21 21 N 1.32243 * 119.97497 * 179.17650 * 8 7 5 22 22 C 1.50700 * 109.47172 * 274.99936 * 5 3 2 23 23 C 1.38234 * 119.99970 * 145.98407 * 22 5 3 24 24 C 1.38237 * 119.99857 * 179.81128 * 23 22 5 25 25 C 1.38236 * 120.00011 * 0.39910 * 24 23 22 26 26 C 1.38239 * 119.99778 * 359.85542 * 25 24 23 27 27 C 1.38234 * 120.00276 * 359.95714 * 26 25 24 28 28 H 1.09000 * 109.47682 * 59.99998 * 1 2 3 29 29 H 1.09006 * 109.47395 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47069 * 299.99737 * 1 2 3 31 31 H 1.08993 * 109.47726 * 307.57986 * 6 5 3 32 32 H 1.09005 * 109.46782 * 67.58242 * 6 5 3 33 33 H 1.09008 * 109.46715 * 187.57338 * 6 5 3 34 34 H 0.97007 * 119.99697 * 234.15363 * 7 5 3 35 35 H 1.08005 * 119.83556 * 0.02562 * 9 8 7 36 36 H 1.07992 * 120.03744 * 180.30130 * 11 10 9 37 37 H 0.97004 * 120.00243 * 354.88631 * 16 15 13 38 38 H 1.07992 * 119.99896 * 0.02562 * 23 22 5 39 39 H 1.07994 * 119.99866 * 180.23460 * 24 23 22 40 40 H 1.07998 * 120.00408 * 179.83463 * 25 24 23 41 41 H 1.08002 * 119.99934 * 179.97438 * 26 25 24 42 42 H 1.07996 * 120.00145 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0069 2.6072 -0.6102 7 7 4.1128 0.1707 -0.7933 8 6 3.6894 -0.0208 -2.1014 9 6 2.7272 0.8307 -2.6566 10 7 2.3189 0.6544 -3.9007 11 6 2.8197 -0.3221 -4.6331 12 6 3.7831 -1.1880 -4.0842 13 6 4.3177 -2.2392 -4.8621 14 1 4.0655 -2.3184 -5.9092 15 6 5.1746 -3.1787 -4.2751 16 7 5.6893 -4.1368 -5.0006 17 14 5.5821 -3.0629 -2.4557 18 1 6.5034 -4.1666 -2.0836 19 1 6.2346 -1.7585 -2.1767 20 1 4.3325 -3.1713 -1.6608 21 7 4.1952 -1.0077 -2.8218 22 6 4.0750 1.1772 1.4146 23 6 5.2758 0.5440 1.6753 24 6 5.7443 0.4578 2.9730 25 6 5.0080 0.9977 4.0109 26 6 3.8046 1.6263 3.7508 27 6 3.3379 1.7158 2.4527 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 3.5293 2.7382 -1.5811 32 1 3.7156 3.4233 0.0512 33 1 5.0898 2.6093 -0.7346 34 1 4.7706 -0.4266 -0.4041 35 1 2.3165 1.6357 -2.0651 36 1 2.4867 -0.4596 -5.6512 37 1 5.4207 -4.2417 -5.9267 38 1 5.8495 0.1196 0.8647 39 1 6.6843 -0.0336 3.1762 40 1 5.3727 0.9281 5.0251 41 1 3.2291 2.0477 4.5617 42 1 2.3976 2.2066 2.2495 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160467672.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:28:03 Heat of formation + Delta-G solvation = -9.569441 kcal Electronic energy + Delta-G solvation = -28564.593727 eV Core-core repulsion = 24702.804039 eV Total energy + Delta-G solvation = -3861.789688 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.25477 -39.32263 -39.24102 -36.72378 -36.12624 -34.18773 -32.97149 -31.74252 -31.14213 -29.59345 -28.72733 -27.86002 -25.89983 -24.66733 -23.40172 -22.54857 -22.17641 -21.26251 -19.86741 -18.71265 -18.01030 -17.59416 -16.67058 -16.43498 -16.36320 -15.67913 -15.37712 -15.10941 -14.82542 -14.36057 -14.01262 -13.76927 -13.65864 -13.51773 -13.40529 -12.97896 -12.77544 -12.56457 -12.43814 -12.27835 -12.10987 -11.92416 -11.50894 -11.32767 -11.19075 -11.05428 -11.00015 -10.69018 -10.59262 -10.20282 -9.91704 -9.45471 -9.17087 -9.13999 -9.06588 -8.93095 -7.78746 -7.27426 -7.18627 -4.98808 1.04759 1.17802 2.17520 2.40882 2.60113 2.83656 3.34166 3.49151 3.59165 3.59832 3.91354 4.26507 4.30256 4.54139 4.62744 4.77677 4.82536 4.91860 4.99849 5.18745 5.25218 5.31361 5.35367 5.45444 5.57555 5.60949 5.66187 5.71322 5.77610 5.80593 5.87872 6.06181 6.17560 6.21825 6.25309 6.29109 6.42285 6.49565 6.68273 6.73672 7.16160 7.25550 7.39413 7.68761 7.81766 7.95101 8.16569 8.42874 8.93082 9.38754 9.81952 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.013313 B = 0.005122 C = 0.004166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.661939 B = 5464.856027 C = 6720.053446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.337 6.337 3 C 0.472 3.528 4 O -0.508 6.508 5 C 0.247 3.753 6 C -0.154 4.154 7 N -0.717 5.717 8 C 0.410 3.590 9 C -0.177 4.177 10 N -0.391 5.391 11 C -0.086 4.086 12 C 0.237 3.763 13 C -0.449 4.449 14 H 0.090 0.910 15 C 0.043 3.957 16 N -0.791 5.791 17 Si 1.151 2.849 18 H -0.330 1.330 19 H -0.281 1.281 20 H -0.289 1.289 21 N -0.592 5.592 22 C -0.083 4.083 23 C -0.102 4.102 24 C -0.112 4.112 25 C -0.115 4.115 26 C -0.114 4.114 27 C -0.109 4.109 28 H 0.065 0.935 29 H 0.099 0.901 30 H 0.059 0.941 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.403 0.597 35 H 0.130 0.870 36 H 0.137 0.863 37 H 0.287 0.713 38 H 0.130 0.870 39 H 0.129 0.871 40 H 0.125 0.875 41 H 0.126 0.874 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.762 7.699 16.134 17.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.252 6.252 3 C 0.313 3.687 4 O -0.396 6.396 5 C 0.157 3.843 6 C -0.212 4.212 7 N -0.357 5.357 8 C 0.170 3.830 9 C -0.336 4.336 10 N -0.102 5.102 11 C -0.258 4.258 12 C 0.112 3.888 13 C -0.482 4.482 14 H 0.108 0.892 15 C -0.180 4.180 16 N -0.412 5.412 17 Si 0.986 3.014 18 H -0.264 1.264 19 H -0.209 1.209 20 H -0.217 1.217 21 N -0.324 5.324 22 C -0.084 4.084 23 C -0.121 4.121 24 C -0.130 4.130 25 C -0.133 4.133 26 C -0.132 4.132 27 C -0.127 4.127 28 H 0.084 0.916 29 H 0.117 0.883 30 H 0.078 0.922 31 H 0.103 0.897 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.242 0.758 35 H 0.147 0.853 36 H 0.155 0.845 37 H 0.098 0.902 38 H 0.148 0.852 39 H 0.147 0.853 40 H 0.142 0.858 41 H 0.144 0.856 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.250 7.444 17.206 18.788 hybrid contribution -1.004 0.422 -1.404 1.777 sum -2.254 7.865 15.802 17.794 Atomic orbital electron populations 1.23269 0.76678 1.03689 1.02248 1.86614 1.23005 1.32639 1.82932 1.23843 0.91757 0.81838 0.71216 1.90655 1.66566 1.36297 1.46111 1.18772 0.85475 0.90328 0.89746 1.22337 1.02931 0.93200 1.02775 1.44311 1.48290 1.32635 1.10492 1.18944 0.89252 0.90597 0.84238 1.22041 1.08575 1.07459 0.95548 1.67538 1.21362 1.16734 1.04581 1.22859 1.03908 0.98370 1.00616 1.19151 0.89543 0.92628 0.87431 1.20832 1.22899 1.06563 0.97940 0.89216 1.27864 0.90224 0.90408 1.09479 1.70637 1.32319 1.27420 1.10855 0.81872 0.76062 0.73323 0.70127 1.26354 1.20880 1.21664 1.66773 1.33338 1.23570 1.08690 1.19386 0.96280 1.00537 0.92187 1.20978 0.95311 0.98198 0.97568 1.21161 1.00083 0.99493 0.92281 1.21229 0.94938 0.97907 0.99269 1.21097 0.96472 0.99435 0.96202 1.21053 0.99846 0.99348 0.92496 0.91617 0.88252 0.92211 0.89693 0.90470 0.90254 0.75800 0.85288 0.84532 0.90210 0.85193 0.85341 0.85751 0.85648 0.85653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.56 101.05 1.07 1.55 16 2 O -0.34 -5.93 9.83 -39.27 -0.39 -6.32 16 3 C 0.47 8.10 2.73 36.01 0.10 8.20 16 4 O -0.51 -9.01 14.98 -18.75 -0.28 -9.29 16 5 C 0.25 3.92 0.86 -134.12 -0.12 3.80 16 6 C -0.15 -2.28 7.79 37.16 0.29 -1.99 16 7 N -0.72 -13.29 4.89 -49.75 -0.24 -13.53 16 8 C 0.41 9.25 7.04 -155.02 -1.09 8.16 16 9 C -0.18 -4.04 8.57 -16.78 -0.14 -4.19 16 10 N -0.39 -9.51 10.47 -12.11 -0.13 -9.63 16 11 C -0.09 -2.11 10.97 -16.58 -0.18 -2.29 16 12 C 0.24 6.14 6.39 -84.83 -0.54 5.60 16 13 C -0.45 -11.77 9.59 -37.75 -0.36 -12.13 16 14 H 0.09 2.30 8.05 -52.49 -0.42 1.88 16 15 C 0.04 1.13 5.52 -17.34 -0.10 1.04 16 16 N -0.79 -20.65 13.65 55.55 0.76 -19.89 16 17 Si 1.15 27.28 25.51 -169.99 -4.34 22.94 16 18 H -0.33 -7.72 7.11 56.52 0.40 -7.32 16 19 H -0.28 -6.49 6.74 56.52 0.38 -6.11 16 20 H -0.29 -6.97 7.09 56.52 0.40 -6.57 16 21 N -0.59 -14.80 4.77 -10.14 -0.05 -14.85 16 22 C -0.08 -1.11 4.80 -104.62 -0.50 -1.61 16 23 C -0.10 -1.23 9.06 -39.58 -0.36 -1.59 16 24 C -0.11 -1.10 10.05 -39.58 -0.40 -1.50 16 25 C -0.12 -1.04 10.05 -39.58 -0.40 -1.44 16 26 C -0.11 -1.11 10.05 -39.58 -0.40 -1.51 16 27 C -0.11 -1.31 9.15 -39.58 -0.36 -1.67 16 28 H 0.07 0.96 8.13 -51.93 -0.42 0.53 16 29 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.06 0.70 8.13 -51.93 -0.42 0.28 16 31 H 0.08 1.42 5.46 -51.93 -0.28 1.14 16 32 H 0.08 1.00 8.09 -51.93 -0.42 0.58 16 33 H 0.08 1.07 8.14 -51.92 -0.42 0.65 16 34 H 0.40 7.07 6.41 -40.82 -0.26 6.80 16 35 H 0.13 2.79 3.60 -52.48 -0.19 2.60 16 36 H 0.14 3.08 8.06 -52.49 -0.42 2.66 16 37 H 0.29 7.09 8.72 -40.82 -0.36 6.74 16 38 H 0.13 1.53 6.36 -52.49 -0.33 1.20 16 39 H 0.13 0.98 8.06 -52.49 -0.42 0.55 16 40 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 41 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 42 H 0.13 1.54 6.73 -52.49 -0.35 1.18 16 LS Contribution 346.42 15.07 5.22 5.22 Total: -1.00 -30.76 346.42 -7.76 -38.51 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -4.82 Total: 8.40 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: -3.49 Total: -1.56 kcal Atomic # 7 Polarization: -58.24 SS G_CDS: 0.34 Total: -57.90 kcal Atomic # 8 Polarization: -14.94 SS G_CDS: -0.67 Total: -15.61 kcal Atomic # 14 Polarization: 27.28 SS G_CDS: -4.34 Total: 22.94 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.76 -7.76 -38.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160467672.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.943 kcal (2) G-P(sol) polarization free energy of solvation -30.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds