Wall clock time and date at job start Tue Mar 31 2020 16:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45189 * 1 3 3 C 1.34233 * 117.00183 * 2 1 4 4 O 1.20820 * 119.99936 * 0.02562 * 3 2 1 5 5 C 1.50701 * 120.00067 * 180.02562 * 3 2 1 6 6 C 1.52999 * 109.46807 * 154.99767 * 5 3 2 7 7 N 1.46499 * 109.47115 * 35.00226 * 5 3 2 8 8 C 1.38818 * 120.00419 * 54.15465 * 7 5 3 9 9 C 1.39969 * 119.97143 * 359.15411 * 8 7 5 10 10 N 1.32121 * 120.32092 * 180.02562 * 9 8 7 11 11 C 1.31937 * 120.27400 * 359.66362 * 10 9 8 12 12 C 1.40682 * 119.92670 * 0.61192 * 11 10 9 13 13 C 1.41281 * 120.15400 * 179.68957 * 12 11 10 14 14 H 1.07997 * 119.99838 * 6.35237 * 13 12 11 15 15 C 1.40053 * 119.99745 * 186.35943 * 13 12 11 16 16 N 1.30732 * 119.99544 * 181.29300 * 15 13 12 17 17 Si 1.86802 * 120.00369 * 1.29041 * 15 13 12 18 18 H 1.48501 * 109.47017 * 180.02562 * 17 15 13 19 19 H 1.48503 * 109.46824 * 300.00499 * 17 15 13 20 20 H 1.48496 * 109.46851 * 60.00203 * 17 15 13 21 21 N 1.32243 * 119.97497 * 179.17650 * 8 7 5 22 22 C 1.50700 * 109.47172 * 274.99936 * 5 3 2 23 23 C 1.38234 * 119.99970 * 145.98407 * 22 5 3 24 24 C 1.38237 * 119.99857 * 179.81128 * 23 22 5 25 25 C 1.38236 * 120.00011 * 0.39910 * 24 23 22 26 26 C 1.38239 * 119.99778 * 359.85542 * 25 24 23 27 27 C 1.38234 * 120.00276 * 359.95714 * 26 25 24 28 28 H 1.09000 * 109.47682 * 59.99998 * 1 2 3 29 29 H 1.09006 * 109.47395 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47069 * 299.99737 * 1 2 3 31 31 H 1.08993 * 109.47726 * 307.57986 * 6 5 3 32 32 H 1.09005 * 109.46782 * 67.58242 * 6 5 3 33 33 H 1.09008 * 109.46715 * 187.57338 * 6 5 3 34 34 H 0.97007 * 119.99697 * 234.15363 * 7 5 3 35 35 H 1.08005 * 119.83556 * 0.02562 * 9 8 7 36 36 H 1.07992 * 120.03744 * 180.30130 * 11 10 9 37 37 H 0.97004 * 120.00243 * 354.88631 * 16 15 13 38 38 H 1.07992 * 119.99896 * 0.02562 * 23 22 5 39 39 H 1.07994 * 119.99866 * 180.23460 * 24 23 22 40 40 H 1.07998 * 120.00408 * 179.83463 * 25 24 23 41 41 H 1.08002 * 119.99934 * 179.97438 * 26 25 24 42 42 H 1.07996 * 120.00145 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0069 2.6072 -0.6102 7 7 4.1128 0.1707 -0.7933 8 6 3.6894 -0.0208 -2.1014 9 6 2.7272 0.8307 -2.6566 10 7 2.3189 0.6544 -3.9007 11 6 2.8197 -0.3221 -4.6331 12 6 3.7831 -1.1880 -4.0842 13 6 4.3177 -2.2392 -4.8621 14 1 4.0655 -2.3184 -5.9092 15 6 5.1746 -3.1787 -4.2751 16 7 5.6893 -4.1368 -5.0006 17 14 5.5821 -3.0629 -2.4557 18 1 6.5034 -4.1666 -2.0836 19 1 6.2346 -1.7585 -2.1767 20 1 4.3325 -3.1713 -1.6608 21 7 4.1952 -1.0077 -2.8218 22 6 4.0750 1.1772 1.4146 23 6 5.2758 0.5440 1.6753 24 6 5.7443 0.4578 2.9730 25 6 5.0080 0.9977 4.0109 26 6 3.8046 1.6263 3.7508 27 6 3.3379 1.7158 2.4527 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 3.5293 2.7382 -1.5811 32 1 3.7156 3.4233 0.0512 33 1 5.0898 2.6093 -0.7346 34 1 4.7706 -0.4266 -0.4041 35 1 2.3165 1.6357 -2.0651 36 1 2.4867 -0.4596 -5.6512 37 1 5.4207 -4.2417 -5.9267 38 1 5.8495 0.1196 0.8647 39 1 6.6843 -0.0336 3.1762 40 1 5.3727 0.9281 5.0251 41 1 3.2291 2.0477 4.5617 42 1 2.3976 2.2066 2.2495 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160467672.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:28:02 Heat of formation + Delta-G solvation = -27.147329 kcal Electronic energy + Delta-G solvation = -28565.355961 eV Core-core repulsion = 24702.804039 eV Total energy + Delta-G solvation = -3862.551922 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.57127 -41.07668 -40.25599 -38.00603 -37.52473 -36.12874 -34.68484 -33.29123 -31.99563 -30.82057 -30.23804 -29.02184 -27.78496 -25.85856 -24.95026 -23.85522 -23.23676 -22.81725 -21.20265 -20.53940 -19.33617 -19.02829 -18.03997 -17.97835 -17.61102 -17.17283 -16.89036 -16.37735 -15.82973 -15.66909 -15.63055 -15.20125 -15.03661 -14.91836 -14.70505 -14.37953 -14.16122 -13.88673 -13.87083 -13.46732 -13.26572 -13.11975 -13.02856 -12.93406 -12.80164 -12.52463 -12.12187 -12.02142 -11.87406 -11.86588 -11.64492 -11.38133 -11.06556 -10.84119 -9.93826 -9.85876 -9.74665 -9.19213 -8.95784 -6.97751 0.20614 0.37858 0.47646 0.75709 0.88054 1.51600 1.56633 1.69032 1.90011 2.08240 2.40903 2.60602 2.74929 3.18998 3.41664 3.53417 3.77048 3.85751 3.93421 4.00004 4.03792 4.14800 4.17553 4.22019 4.24489 4.46342 4.49772 4.53561 4.54816 4.56578 4.69436 4.80231 4.87439 5.00125 5.04139 5.20314 5.27041 5.29572 5.41816 5.45597 5.53608 5.66455 5.82533 5.97704 6.12954 6.30460 6.50357 6.55421 7.03137 7.48024 7.83731 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.013313 B = 0.005122 C = 0.004166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.661939 B = 5464.856027 C = 6720.053446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.358 6.358 3 C 0.469 3.531 4 O -0.519 6.519 5 C 0.244 3.756 6 C -0.151 4.151 7 N -0.706 5.706 8 C 0.410 3.590 9 C -0.168 4.168 10 N -0.400 5.400 11 C -0.104 4.104 12 C 0.229 3.771 13 C -0.472 4.472 14 H 0.084 0.916 15 C 0.020 3.980 16 N -0.808 5.808 17 Si 1.180 2.820 18 H -0.325 1.325 19 H -0.274 1.274 20 H -0.297 1.297 21 N -0.605 5.605 22 C -0.101 4.101 23 C -0.117 4.117 24 C -0.111 4.111 25 C -0.107 4.107 26 C -0.111 4.111 27 C -0.121 4.121 28 H 0.053 0.947 29 H 0.121 0.879 30 H 0.080 0.920 31 H 0.061 0.939 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.408 0.592 35 H 0.143 0.857 36 H 0.149 0.851 37 H 0.288 0.712 38 H 0.126 0.874 39 H 0.153 0.847 40 H 0.158 0.842 41 H 0.152 0.848 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.299 8.496 19.313 21.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.273 6.273 3 C 0.311 3.689 4 O -0.408 6.408 5 C 0.154 3.846 6 C -0.209 4.209 7 N -0.345 5.345 8 C 0.168 3.832 9 C -0.329 4.329 10 N -0.111 5.111 11 C -0.273 4.273 12 C 0.103 3.897 13 C -0.506 4.506 14 H 0.102 0.898 15 C -0.200 4.200 16 N -0.429 5.429 17 Si 1.013 2.987 18 H -0.258 1.258 19 H -0.202 1.202 20 H -0.225 1.225 21 N -0.339 5.339 22 C -0.101 4.101 23 C -0.135 4.135 24 C -0.129 4.129 25 C -0.125 4.125 26 C -0.129 4.129 27 C -0.139 4.139 28 H 0.072 0.928 29 H 0.139 0.861 30 H 0.098 0.902 31 H 0.080 0.920 32 H 0.113 0.887 33 H 0.109 0.891 34 H 0.248 0.752 35 H 0.160 0.840 36 H 0.167 0.833 37 H 0.099 0.901 38 H 0.144 0.856 39 H 0.171 0.829 40 H 0.175 0.825 41 H 0.169 0.831 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -0.785 8.245 20.386 22.004 hybrid contribution -1.242 0.305 -2.214 2.556 sum -2.027 8.550 18.172 20.185 Atomic orbital electron populations 1.23532 0.74961 1.05341 1.02678 1.86591 1.24927 1.32948 1.82867 1.24068 0.92267 0.81661 0.70863 1.90640 1.66929 1.36507 1.46678 1.19023 0.84740 0.89523 0.91271 1.22314 1.03408 0.93371 1.01769 1.44438 1.47744 1.33267 1.09065 1.19127 0.88812 0.89723 0.85548 1.22337 1.07987 1.07330 0.95199 1.67562 1.21585 1.16750 1.05213 1.23000 1.04309 0.98645 1.01385 1.19289 0.89715 0.92700 0.87980 1.20851 1.24229 1.07520 0.97962 0.89832 1.28494 0.90130 0.90208 1.11120 1.70642 1.33163 1.27958 1.11185 0.81499 0.75605 0.73606 0.68011 1.25757 1.20193 1.22547 1.66799 1.33905 1.24490 1.08672 1.19247 0.97397 1.02765 0.90717 1.21059 0.95056 0.98685 0.98706 1.21488 1.00971 0.98969 0.91440 1.21646 0.94118 0.96124 1.00628 1.21429 0.96912 0.98779 0.95792 1.21082 0.99669 0.99879 0.93313 0.92786 0.86122 0.90178 0.91995 0.88716 0.89150 0.75160 0.84028 0.83335 0.90087 0.85627 0.82935 0.82473 0.83078 0.86490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 10.56 113.37 1.20 1.94 16 2 O -0.36 -12.29 9.83 -51.45 -0.51 -12.80 16 3 C 0.47 15.70 2.73 71.24 0.19 15.89 16 4 O -0.52 -17.98 14.98 21.98 0.33 -17.65 16 5 C 0.24 7.45 0.86 2.11 0.00 7.45 16 6 C -0.15 -4.28 7.79 71.98 0.56 -3.72 16 7 N -0.71 -25.51 4.89 -311.32 -1.52 -27.03 16 8 C 0.41 18.28 7.04 133.38 0.94 19.22 16 9 C -0.17 -7.60 8.57 85.07 0.73 -6.87 16 10 N -0.40 -19.41 10.47 -192.23 -2.01 -21.42 16 11 C -0.10 -5.14 10.97 85.27 0.94 -4.20 16 12 C 0.23 11.94 6.39 40.16 0.26 12.19 16 13 C -0.47 -25.18 9.59 23.46 0.23 -24.96 16 14 H 0.08 4.42 8.05 -2.91 -0.02 4.39 16 15 C 0.02 1.08 5.52 85.30 0.47 1.55 16 16 N -0.81 -42.49 13.65 21.84 0.30 -42.20 16 17 Si 1.18 55.05 25.51 68.60 1.75 56.80 16 18 H -0.32 -14.69 7.11 99.48 0.71 -13.98 16 19 H -0.27 -12.37 6.74 99.48 0.67 -11.70 16 20 H -0.30 -14.14 7.09 99.48 0.71 -13.44 16 21 N -0.61 -30.16 4.77 -185.99 -0.89 -31.05 16 22 C -0.10 -2.51 4.80 -19.87 -0.10 -2.61 16 23 C -0.12 -2.55 9.06 22.27 0.20 -2.35 16 24 C -0.11 -1.80 10.05 22.27 0.22 -1.57 16 25 C -0.11 -1.48 10.05 22.27 0.22 -1.25 16 26 C -0.11 -1.77 10.05 22.27 0.22 -1.55 16 27 C -0.12 -2.65 9.15 22.27 0.20 -2.44 16 28 H 0.05 1.54 8.13 -2.39 -0.02 1.52 16 29 H 0.12 2.61 8.14 -2.38 -0.02 2.59 16 30 H 0.08 1.77 8.13 -2.39 -0.02 1.75 16 31 H 0.06 2.03 5.46 -2.39 -0.01 2.02 16 32 H 0.09 2.33 8.09 -2.38 -0.02 2.31 16 33 H 0.09 2.33 8.14 -2.38 -0.02 2.31 16 34 H 0.41 13.88 6.41 -92.70 -0.59 13.29 16 35 H 0.14 6.05 3.60 -2.91 -0.01 6.04 16 36 H 0.15 6.80 8.06 -2.91 -0.02 6.78 16 37 H 0.29 14.50 8.72 -92.71 -0.81 13.69 16 38 H 0.13 2.77 6.36 -2.91 -0.02 2.75 16 39 H 0.15 1.69 8.06 -2.91 -0.02 1.67 16 40 H 0.16 1.15 8.06 -2.91 -0.02 1.13 16 41 H 0.15 1.58 8.06 -2.91 -0.02 1.56 16 42 H 0.12 2.71 6.73 -2.91 -0.02 2.69 16 Total: -1.00 -65.60 346.42 4.35 -61.25 By element: Atomic # 1 Polarization: 26.96 SS G_CDS: 0.40 Total: 27.37 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: 6.49 Total: 6.72 kcal Atomic # 7 Polarization: -117.57 SS G_CDS: -4.12 Total: -121.69 kcal Atomic # 8 Polarization: -30.27 SS G_CDS: -0.18 Total: -30.45 kcal Atomic # 14 Polarization: 55.05 SS G_CDS: 1.75 Total: 56.80 kcal Total: -65.60 4.35 -61.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160467672.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.107 kcal (2) G-P(sol) polarization free energy of solvation -65.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds