Wall clock time and date at job start Tue Mar 31 2020 15:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34842 * 117.00221 * 2 1 4 4 O 1.21565 * 119.99879 * 0.02562 * 3 2 1 5 5 C 1.47014 * 120.00007 * 180.02562 * 3 2 1 6 6 C 1.39569 * 120.48596 * 354.32810 * 5 3 2 7 7 C 1.37797 * 120.14221 * 179.97438 * 6 5 3 8 8 C 1.39420 * 121.19775 * 0.02562 * 7 6 5 9 9 N 1.39152 * 119.50233 * 180.02562 * 8 7 6 10 10 C 1.46490 * 120.00024 * 359.97438 * 9 8 7 11 11 C 1.50697 * 109.47328 * 179.97438 * 10 9 8 12 12 C 1.38597 * 120.80297 * 269.72833 * 11 10 9 13 13 N 1.32340 * 119.10323 * 179.71751 * 12 11 10 14 14 C 1.31791 * 120.81458 * 0.56155 * 13 12 11 15 15 C 1.50708 * 119.11991 * 179.73007 * 14 13 12 16 16 N 1.31787 * 121.75746 * 359.71155 * 14 13 12 17 17 C 1.32334 * 120.82110 * 359.97438 * 16 14 13 18 18 C 1.38439 * 120.99544 * 359.72911 * 8 7 6 19 19 C 1.40507 * 119.77086 * 0.50477 * 18 8 7 20 20 C 1.40934 * 120.56893 * 179.78749 * 19 18 8 21 21 H 1.07996 * 120.00224 * 147.19716 * 20 19 18 22 22 C 1.40258 * 120.00087 * 327.47194 * 20 19 18 23 23 N 1.30638 * 119.99522 * 350.50489 * 22 20 19 24 24 Si 1.86799 * 120.00082 * 170.50430 * 22 20 19 25 25 H 1.48504 * 109.46922 * 60.00031 * 24 22 20 26 26 H 1.48500 * 109.47068 * 179.97438 * 24 22 20 27 27 H 1.48495 * 109.47395 * 300.00196 * 24 22 20 28 28 H 1.09002 * 109.47017 * 59.99544 * 1 2 3 29 29 H 1.09000 * 109.47346 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.46645 * 300.00181 * 1 2 3 31 31 H 1.08001 * 119.93329 * 359.97176 * 6 5 3 32 32 H 1.07995 * 119.40581 * 180.02562 * 7 6 5 33 33 H 0.97005 * 119.99551 * 179.97438 * 9 8 7 34 34 H 1.08996 * 109.47560 * 300.00813 * 10 9 8 35 35 H 1.09002 * 109.46984 * 60.00319 * 10 9 8 36 36 H 1.07996 * 120.44934 * 359.97438 * 12 11 10 37 37 H 1.09001 * 109.46835 * 269.98169 * 15 14 13 38 38 H 1.08997 * 109.47003 * 29.97632 * 15 14 13 39 39 H 1.08998 * 109.47192 * 149.97801 * 15 14 13 40 40 H 1.08001 * 120.44541 * 180.02562 * 17 16 14 41 41 H 1.08004 * 120.11748 * 180.28831 * 18 8 7 42 42 H 0.96999 * 119.99332 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0642 1.2014 0.0000 4 8 1.4021 2.2210 0.0005 5 6 3.5323 1.2783 -0.0006 6 6 4.3020 0.1201 0.1178 7 6 5.6777 0.2003 0.1159 8 6 6.3294 1.4272 -0.0024 9 7 7.7203 1.4672 -0.0008 10 6 8.4887 0.2263 0.1251 11 6 9.9618 0.5427 0.0991 12 6 10.6611 0.5687 -1.0973 13 7 11.9528 0.8561 -1.0817 14 6 12.5756 1.1044 0.0529 15 6 14.0487 1.4215 0.0269 16 7 11.9444 1.0833 1.2097 17 6 10.6511 0.8097 1.2715 18 6 5.6136 2.6055 -0.1276 19 6 4.2089 2.5721 -0.1255 20 6 3.4635 3.7620 -0.2474 21 1 2.5112 3.7528 -0.7567 22 6 3.9611 4.9592 0.2876 23 7 5.0176 4.9419 1.0558 24 14 3.1132 6.5783 -0.0983 25 1 1.7084 6.5278 0.3807 26 1 3.8286 7.6866 0.5836 27 1 3.1279 6.8075 -1.5654 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 3.8185 -0.8411 0.2110 32 1 6.2617 -0.7034 0.2077 33 1 8.1811 2.3168 -0.0831 34 1 8.2381 -0.2622 1.0667 35 1 8.2453 -0.4375 -0.7045 36 1 10.1578 0.3613 -2.0300 37 1 14.6207 0.4983 0.1207 38 1 14.2987 1.9096 -0.9150 39 1 14.2921 2.0857 0.8561 40 1 10.1398 0.7944 2.2226 41 1 6.1330 3.5476 -0.2230 42 1 5.3615 5.7699 1.4261 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168392027.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:47:29 Heat of formation + Delta-G solvation = -16.496976 kcal Electronic energy + Delta-G solvation = -26250.854675 eV Core-core repulsion = 22388.764587 eV Total energy + Delta-G solvation = -3862.090088 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.25228 -39.15945 -37.84208 -35.76035 -34.99422 -33.86669 -33.80659 -32.85083 -30.08553 -29.67202 -28.16592 -26.89329 -25.56122 -24.81414 -24.70806 -22.18473 -22.00330 -20.79907 -19.42795 -17.89755 -17.44334 -16.96031 -16.62456 -16.18712 -15.72513 -15.41505 -15.29793 -15.03564 -14.72608 -13.91889 -13.89084 -13.48648 -13.47880 -13.33643 -12.97591 -12.78127 -12.71789 -12.60458 -12.45741 -12.31772 -11.62261 -11.53864 -11.17712 -11.14894 -11.02886 -10.97146 -10.95868 -10.66860 -10.34255 -9.89868 -9.69528 -9.48344 -9.46115 -9.34857 -8.98314 -8.80346 -7.45682 -6.91496 -6.44906 -4.50957 0.64725 0.92692 2.31517 2.82447 3.04695 3.10299 3.24286 3.49058 3.76938 3.82277 3.90723 3.97572 4.00035 4.22350 4.47664 4.61463 4.62302 4.74876 5.07333 5.26319 5.28872 5.52220 5.60926 5.62471 5.63094 5.71517 5.72823 5.87707 5.92396 6.06414 6.24624 6.27940 6.44139 6.73286 6.79065 6.93030 7.10302 7.15974 7.41369 7.46967 7.62637 7.78277 7.91170 7.97150 8.31145 8.39746 8.62587 8.74831 8.85365 9.17339 10.05544 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.012784 B = 0.003008 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2189.675629 B = 9306.645803 C =11141.715954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.376 6.376 3 C 0.505 3.495 4 O -0.524 6.524 5 C -0.287 4.287 6 C 0.004 3.996 7 C -0.306 4.306 8 C 0.242 3.758 9 N -0.752 5.752 10 C 0.183 3.817 11 C -0.208 4.208 12 C 0.168 3.832 13 N -0.521 5.521 14 C 0.312 3.688 15 C -0.085 4.085 16 N -0.521 5.521 17 C 0.169 3.831 18 C -0.235 4.235 19 C 0.183 3.817 20 C -0.413 4.413 21 H 0.103 0.897 22 C 0.072 3.928 23 N -0.781 5.781 24 Si 0.917 3.083 25 H -0.261 1.261 26 H -0.278 1.278 27 H -0.262 1.262 28 H 0.052 0.948 29 H 0.086 0.914 30 H 0.052 0.948 31 H 0.103 0.897 32 H 0.094 0.906 33 H 0.392 0.608 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.170 0.830 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.171 0.829 41 H 0.120 0.880 42 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.001 -7.101 -1.233 12.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.295 6.295 3 C 0.357 3.643 4 O -0.415 6.415 5 C -0.290 4.290 6 C -0.016 4.016 7 C -0.328 4.328 8 C 0.141 3.859 9 N -0.385 5.385 10 C 0.057 3.943 11 C -0.213 4.213 12 C 0.001 3.999 13 N -0.235 5.235 14 C 0.045 3.955 15 C -0.143 4.143 16 N -0.235 5.235 17 C 0.003 3.997 18 C -0.259 4.259 19 C 0.178 3.822 20 C -0.441 4.441 21 H 0.121 0.879 22 C -0.148 4.148 23 N -0.405 5.405 24 Si 0.741 3.259 25 H -0.185 1.185 26 H -0.204 1.204 27 H -0.186 1.186 28 H 0.071 0.929 29 H 0.104 0.896 30 H 0.071 0.929 31 H 0.121 0.879 32 H 0.112 0.888 33 H 0.226 0.774 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.187 0.813 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.104 0.896 40 H 0.188 0.812 41 H 0.138 0.862 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 10.961 -6.650 -1.079 12.866 hybrid contribution -1.358 0.830 0.048 1.593 sum 9.603 -5.820 -1.031 11.276 Atomic orbital electron populations 1.22946 0.78890 1.01869 1.01663 1.86594 1.21310 1.35318 1.86274 1.21305 0.89604 0.80097 0.73343 1.90730 1.66929 1.35270 1.48571 1.19667 0.86616 0.95004 1.27728 1.20601 0.92950 0.96005 0.92000 1.19772 0.93961 0.94713 1.24353 1.17690 0.81350 0.94337 0.92505 1.44421 1.03408 1.06654 1.83993 1.19837 0.83710 0.88693 1.02029 1.21822 0.99079 1.04621 0.95773 1.23251 0.89250 0.89198 0.98165 1.68312 1.10433 1.13904 1.30899 1.23316 0.97937 0.90564 0.83720 1.20561 0.86544 1.03038 1.04165 1.68312 1.10145 1.15387 1.29649 1.23269 0.89292 0.88435 0.98747 1.20611 0.93382 0.95090 1.16816 1.18093 0.90628 0.89788 0.83702 1.20126 1.05101 0.90964 1.27909 0.87881 1.26134 0.94139 1.01484 0.93066 1.69743 1.19119 1.30072 1.21560 0.86210 0.80529 0.79316 0.79888 1.18534 1.20352 1.18638 0.92894 0.89571 0.92889 0.87871 0.88767 0.77391 0.91460 0.91479 0.81276 0.89687 0.89648 0.89636 0.81234 0.86207 0.90619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.65 10.57 101.05 1.07 1.72 16 2 O -0.38 -7.69 9.85 -40.88 -0.40 -8.09 16 3 C 0.51 12.21 7.85 34.29 0.27 12.48 16 4 O -0.52 -13.80 13.55 -19.31 -0.26 -14.06 16 5 C -0.29 -7.07 6.07 -102.50 -0.62 -7.69 16 6 C 0.00 0.08 9.60 -39.25 -0.38 -0.30 16 7 C -0.31 -6.14 9.24 -39.30 -0.36 -6.50 16 8 C 0.24 4.99 6.63 -84.02 -0.56 4.43 16 9 N -0.75 -12.25 5.70 -59.95 -0.34 -12.59 16 10 C 0.18 2.31 5.05 -5.20 -0.03 2.28 16 11 C -0.21 -2.41 5.28 -104.36 -0.55 -2.96 16 12 C 0.17 1.92 11.01 -17.20 -0.19 1.73 16 13 N -0.52 -6.48 10.33 -10.72 -0.11 -6.59 16 14 C 0.31 3.72 7.64 -157.20 -1.20 2.52 16 15 C -0.08 -0.70 10.32 36.01 0.37 -0.33 16 16 N -0.52 -6.57 10.33 -10.72 -0.11 -6.68 16 17 C 0.17 1.98 11.01 -17.20 -0.19 1.79 16 18 C -0.23 -5.64 8.46 -38.65 -0.33 -5.97 16 19 C 0.18 4.78 5.67 -104.68 -0.59 4.19 16 20 C -0.41 -11.08 7.85 -37.80 -0.30 -11.38 16 21 H 0.10 2.86 5.97 -52.49 -0.31 2.55 16 22 C 0.07 1.78 5.26 -17.30 -0.09 1.69 16 23 N -0.78 -19.48 11.06 55.56 0.61 -18.87 16 24 Si 0.92 19.08 29.57 -169.99 -5.03 14.05 16 25 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 26 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 27 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 28 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.05 0.83 8.14 -51.92 -0.42 0.41 16 31 H 0.10 1.99 7.63 -52.49 -0.40 1.59 16 32 H 0.09 1.62 6.58 -52.49 -0.35 1.28 16 33 H 0.39 6.33 8.45 -40.82 -0.34 5.99 16 34 H 0.07 0.83 7.87 -51.93 -0.41 0.42 16 35 H 0.07 0.80 7.86 -51.93 -0.41 0.39 16 36 H 0.17 1.60 8.06 -52.49 -0.42 1.18 16 37 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.17 1.70 8.06 -52.49 -0.42 1.28 16 41 H 0.12 2.97 6.50 -52.48 -0.34 2.63 16 42 H 0.28 6.45 8.29 -40.82 -0.34 6.11 16 LS Contribution 363.32 15.07 5.48 5.48 Total: -1.00 -30.56 363.32 -8.92 -39.48 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: -5.08 Total: 10.16 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: -3.68 Total: -2.29 kcal Atomic # 7 Polarization: -44.78 SS G_CDS: 0.05 Total: -44.73 kcal Atomic # 8 Polarization: -21.49 SS G_CDS: -0.66 Total: -22.15 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.03 Total: 14.05 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.56 -8.92 -39.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168392027.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.979 kcal (2) G-P(sol) polarization free energy of solvation -30.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds