Wall clock time and date at job start Tue Mar 31 2020 15:47:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34842 * 117.00221 * 2 1 4 4 O 1.21565 * 119.99879 * 0.02562 * 3 2 1 5 5 C 1.47014 * 120.00007 * 180.02562 * 3 2 1 6 6 C 1.39569 * 120.48596 * 354.32810 * 5 3 2 7 7 C 1.37797 * 120.14221 * 179.97438 * 6 5 3 8 8 C 1.39420 * 121.19775 * 0.02562 * 7 6 5 9 9 N 1.39152 * 119.50233 * 180.02562 * 8 7 6 10 10 C 1.46490 * 120.00024 * 359.97438 * 9 8 7 11 11 C 1.50697 * 109.47328 * 179.97438 * 10 9 8 12 12 C 1.38597 * 120.80297 * 269.72833 * 11 10 9 13 13 N 1.32340 * 119.10323 * 179.71751 * 12 11 10 14 14 C 1.31791 * 120.81458 * 0.56155 * 13 12 11 15 15 C 1.50708 * 119.11991 * 179.73007 * 14 13 12 16 16 N 1.31787 * 121.75746 * 359.71155 * 14 13 12 17 17 C 1.32334 * 120.82110 * 359.97438 * 16 14 13 18 18 C 1.38439 * 120.99544 * 359.72911 * 8 7 6 19 19 C 1.40507 * 119.77086 * 0.50477 * 18 8 7 20 20 C 1.40934 * 120.56893 * 179.78749 * 19 18 8 21 21 H 1.07996 * 120.00224 * 147.19716 * 20 19 18 22 22 C 1.40258 * 120.00087 * 327.47194 * 20 19 18 23 23 N 1.30638 * 119.99522 * 350.50489 * 22 20 19 24 24 Si 1.86799 * 120.00082 * 170.50430 * 22 20 19 25 25 H 1.48504 * 109.46922 * 60.00031 * 24 22 20 26 26 H 1.48500 * 109.47068 * 179.97438 * 24 22 20 27 27 H 1.48495 * 109.47395 * 300.00196 * 24 22 20 28 28 H 1.09002 * 109.47017 * 59.99544 * 1 2 3 29 29 H 1.09000 * 109.47346 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.46645 * 300.00181 * 1 2 3 31 31 H 1.08001 * 119.93329 * 359.97176 * 6 5 3 32 32 H 1.07995 * 119.40581 * 180.02562 * 7 6 5 33 33 H 0.97005 * 119.99551 * 179.97438 * 9 8 7 34 34 H 1.08996 * 109.47560 * 300.00813 * 10 9 8 35 35 H 1.09002 * 109.46984 * 60.00319 * 10 9 8 36 36 H 1.07996 * 120.44934 * 359.97438 * 12 11 10 37 37 H 1.09001 * 109.46835 * 269.98169 * 15 14 13 38 38 H 1.08997 * 109.47003 * 29.97632 * 15 14 13 39 39 H 1.08998 * 109.47192 * 149.97801 * 15 14 13 40 40 H 1.08001 * 120.44541 * 180.02562 * 17 16 14 41 41 H 1.08004 * 120.11748 * 180.28831 * 18 8 7 42 42 H 0.96999 * 119.99332 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0642 1.2014 0.0000 4 8 1.4021 2.2210 0.0005 5 6 3.5323 1.2783 -0.0006 6 6 4.3020 0.1201 0.1178 7 6 5.6777 0.2003 0.1159 8 6 6.3294 1.4272 -0.0024 9 7 7.7203 1.4672 -0.0008 10 6 8.4887 0.2263 0.1251 11 6 9.9618 0.5427 0.0991 12 6 10.6611 0.5687 -1.0973 13 7 11.9528 0.8561 -1.0817 14 6 12.5756 1.1044 0.0529 15 6 14.0487 1.4215 0.0269 16 7 11.9444 1.0833 1.2097 17 6 10.6511 0.8097 1.2715 18 6 5.6136 2.6055 -0.1276 19 6 4.2089 2.5721 -0.1255 20 6 3.4635 3.7620 -0.2474 21 1 2.5112 3.7528 -0.7567 22 6 3.9611 4.9592 0.2876 23 7 5.0176 4.9419 1.0558 24 14 3.1132 6.5783 -0.0983 25 1 1.7084 6.5278 0.3807 26 1 3.8286 7.6866 0.5836 27 1 3.1279 6.8075 -1.5654 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 3.8185 -0.8411 0.2110 32 1 6.2617 -0.7034 0.2077 33 1 8.1811 2.3168 -0.0831 34 1 8.2381 -0.2622 1.0667 35 1 8.2453 -0.4375 -0.7045 36 1 10.1578 0.3613 -2.0300 37 1 14.6207 0.4983 0.1207 38 1 14.2987 1.9096 -0.9150 39 1 14.2921 2.0857 0.8561 40 1 10.1398 0.7944 2.2226 41 1 6.1330 3.5476 -0.2230 42 1 5.3615 5.7699 1.4261 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168392027.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:47:28 Heat of formation + Delta-G solvation = -34.525145 kcal Electronic energy + Delta-G solvation = -26251.636435 eV Core-core repulsion = 22388.764587 eV Total energy + Delta-G solvation = -3862.871848 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.14323 -40.90522 -39.43337 -37.26866 -36.61199 -35.45554 -34.76438 -34.08362 -31.54871 -31.15707 -29.47670 -28.28801 -27.22569 -25.88200 -25.70176 -23.67262 -23.29540 -22.37058 -21.12554 -19.20892 -18.80009 -18.35823 -17.95422 -17.57918 -17.35536 -16.92213 -16.65896 -16.49792 -15.98667 -15.27393 -14.93435 -14.92179 -14.52145 -14.49338 -14.41870 -14.16693 -14.06577 -13.91818 -13.51026 -13.35942 -13.22338 -12.99807 -12.84161 -12.75653 -12.65901 -12.45638 -12.10997 -11.89281 -11.82889 -11.51199 -11.39643 -11.20696 -10.72409 -10.58213 -10.37386 -10.24128 -9.26799 -8.72241 -8.03654 -6.42234 -0.25234 0.03999 0.52672 1.09488 1.34181 1.44901 1.55270 2.18674 2.20053 2.24440 2.51713 2.78886 2.96485 3.00246 3.14396 3.59846 3.66132 3.72052 3.85778 4.26650 4.40125 4.42018 4.47149 4.55347 4.55918 4.65540 4.70194 4.74479 4.75680 4.83973 5.01561 5.02195 5.06679 5.15306 5.29484 5.42628 5.45874 5.67783 5.79076 5.90507 5.93097 6.08283 6.11877 6.52893 6.82334 6.87101 6.89333 7.02910 7.09068 7.38151 8.25857 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.012784 B = 0.003008 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2189.675629 B = 9306.645803 C =11141.715954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.374 6.374 3 C 0.502 3.498 4 O -0.558 6.558 5 C -0.321 4.321 6 C 0.006 3.994 7 C -0.295 4.295 8 C 0.258 3.742 9 N -0.742 5.742 10 C 0.184 3.816 11 C -0.209 4.209 12 C 0.166 3.834 13 N -0.538 5.538 14 C 0.302 3.698 15 C -0.084 4.084 16 N -0.539 5.539 17 C 0.164 3.836 18 C -0.262 4.262 19 C 0.157 3.843 20 C -0.455 4.455 21 H 0.079 0.921 22 C 0.037 3.963 23 N -0.806 5.806 24 Si 0.976 3.024 25 H -0.272 1.272 26 H -0.259 1.259 27 H -0.257 1.257 28 H 0.051 0.949 29 H 0.134 0.866 30 H 0.049 0.951 31 H 0.129 0.871 32 H 0.134 0.866 33 H 0.393 0.607 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.188 0.812 37 H 0.100 0.900 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.184 0.816 41 H 0.103 0.897 42 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.443 -8.958 -1.203 14.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.292 6.292 3 C 0.355 3.645 4 O -0.453 6.453 5 C -0.325 4.325 6 C -0.013 4.013 7 C -0.317 4.317 8 C 0.155 3.845 9 N -0.372 5.372 10 C 0.060 3.940 11 C -0.213 4.213 12 C 0.000 4.000 13 N -0.252 5.252 14 C 0.035 3.965 15 C -0.142 4.142 16 N -0.253 5.253 17 C -0.002 4.002 18 C -0.287 4.287 19 C 0.153 3.847 20 C -0.484 4.484 21 H 0.097 0.903 22 C -0.180 4.180 23 N -0.431 5.431 24 Si 0.797 3.203 25 H -0.197 1.197 26 H -0.182 1.182 27 H -0.181 1.181 28 H 0.070 0.930 29 H 0.152 0.848 30 H 0.068 0.932 31 H 0.147 0.853 32 H 0.152 0.848 33 H 0.227 0.773 34 H 0.098 0.902 35 H 0.102 0.898 36 H 0.205 0.795 37 H 0.119 0.881 38 H 0.111 0.889 39 H 0.110 0.890 40 H 0.201 0.799 41 H 0.121 0.879 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 12.456 -8.548 -1.049 15.144 hybrid contribution -1.691 1.165 0.044 2.054 sum 10.765 -7.383 -1.004 13.092 Atomic orbital electron populations 1.23350 0.76200 1.04959 1.01528 1.86541 1.23891 1.33114 1.85630 1.21384 0.89799 0.80593 0.72707 1.90702 1.67671 1.36636 1.50259 1.19967 0.87499 0.95696 1.29308 1.20903 0.93581 0.95989 0.90816 1.20182 0.93761 0.95720 1.22012 1.17735 0.83206 0.93549 0.90038 1.44548 1.02005 1.08410 1.82236 1.20008 0.83722 0.87005 1.03283 1.21635 0.98354 1.05517 0.95832 1.23608 0.89198 0.88297 0.98912 1.68397 1.10914 1.14700 1.31184 1.23986 0.99323 0.89686 0.83481 1.20685 0.84603 1.04007 1.04877 1.68387 1.10594 1.16243 1.30084 1.23575 0.89332 0.87765 0.99513 1.20488 0.92959 0.95849 1.19405 1.18460 0.91839 0.90467 0.83946 1.20103 1.04993 0.92810 1.30447 0.90257 1.26759 0.94818 1.03824 0.92578 1.69764 1.20108 1.31034 1.22210 0.85341 0.78846 0.76135 0.79934 1.19748 1.18249 1.18142 0.93022 0.84772 0.93188 0.85307 0.84786 0.77328 0.90243 0.89791 0.79516 0.88119 0.88870 0.88972 0.79919 0.87865 0.89954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.01 10.57 113.37 1.20 2.20 16 2 O -0.37 -15.02 9.85 -57.55 -0.57 -15.59 16 3 C 0.50 24.88 7.85 70.12 0.55 25.43 16 4 O -0.56 -30.80 13.55 19.62 0.27 -30.54 16 5 C -0.32 -16.10 6.07 -18.49 -0.11 -16.22 16 6 C 0.01 0.25 9.60 22.49 0.22 0.47 16 7 C -0.29 -10.98 9.24 22.45 0.21 -10.77 16 8 C 0.26 10.31 6.63 38.31 0.25 10.57 16 9 N -0.74 -22.56 5.70 -343.58 -1.96 -24.52 16 10 C 0.18 4.00 5.05 85.63 0.43 4.43 16 11 C -0.21 -4.29 5.28 -19.69 -0.10 -4.39 16 12 C 0.17 3.42 11.01 84.70 0.93 4.35 16 13 N -0.54 -12.36 10.33 -187.84 -1.94 -14.30 16 14 C 0.30 6.68 7.64 138.76 1.06 7.74 16 15 C -0.08 -1.22 10.32 71.24 0.74 -0.48 16 16 N -0.54 -12.67 10.33 -187.84 -1.94 -14.61 16 17 C 0.16 3.52 11.01 84.70 0.93 4.45 16 18 C -0.26 -12.89 8.46 22.87 0.19 -12.70 16 19 C 0.16 8.56 5.67 -19.90 -0.11 8.45 16 20 C -0.46 -25.84 7.85 23.42 0.18 -25.66 16 21 H 0.08 4.74 5.97 -2.91 -0.02 4.72 16 22 C 0.04 1.92 5.26 85.36 0.45 2.37 16 23 N -0.81 -41.63 11.06 21.88 0.24 -41.39 16 24 Si 0.98 40.58 29.57 68.60 2.03 42.61 16 25 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 26 H -0.26 -9.77 7.11 99.48 0.71 -9.07 16 27 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 28 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.13 2.75 8.14 -2.39 -0.02 2.74 16 30 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 31 H 0.13 4.60 7.63 -2.91 -0.02 4.58 16 32 H 0.13 3.92 6.58 -2.91 -0.02 3.90 16 33 H 0.39 12.15 8.45 -92.70 -0.78 11.37 16 34 H 0.08 1.62 7.87 -2.39 -0.02 1.60 16 35 H 0.08 1.63 7.86 -2.39 -0.02 1.61 16 36 H 0.19 3.03 8.06 -2.91 -0.02 3.00 16 37 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.18 3.26 8.06 -2.91 -0.02 3.24 16 41 H 0.10 5.32 6.50 -2.91 -0.02 5.30 16 42 H 0.29 13.53 8.29 -92.71 -0.77 12.76 16 Total: -1.00 -69.81 363.32 3.44 -66.38 By element: Atomic # 1 Polarization: 31.43 SS G_CDS: 0.29 Total: 31.72 kcal Atomic # 6 Polarization: -6.78 SS G_CDS: 7.02 Total: 0.24 kcal Atomic # 7 Polarization: -89.22 SS G_CDS: -5.60 Total: -94.82 kcal Atomic # 8 Polarization: -45.82 SS G_CDS: -0.30 Total: -46.13 kcal Atomic # 14 Polarization: 40.58 SS G_CDS: 2.03 Total: 42.61 kcal Total: -69.81 3.44 -66.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168392027.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.853 kcal (2) G-P(sol) polarization free energy of solvation -69.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds