Wall clock time and date at job start Tue Mar 31 2020 14:26:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38675 * 120.41687 * 2 1 4 4 C 1.38631 * 118.41839 * 179.97438 * 3 2 1 5 5 C 1.38228 * 119.16303 * 359.97438 * 4 3 2 6 6 C 1.50699 * 119.61950 * 179.97438 * 5 4 3 7 7 H 1.09007 * 109.46940 * 325.00370 * 6 5 4 8 8 C 1.53003 * 109.46992 * 84.99840 * 6 5 4 9 9 N 1.46499 * 109.47156 * 205.00308 * 6 5 4 10 10 C 1.39668 * 119.99825 * 155.00468 * 9 6 5 11 11 C 1.38174 * 119.99445 * 5.90325 * 10 9 6 12 12 C 1.41127 * 119.50804 * 180.02562 * 11 10 9 13 13 C 1.40354 * 120.25113 * 179.97438 * 12 11 10 14 14 H 1.08001 * 119.99957 * 33.95368 * 13 12 11 15 15 C 1.46521 * 120.00063 * 213.94765 * 13 12 11 16 16 N 1.29520 * 120.00117 * 355.80042 * 15 13 12 17 17 Si 1.86801 * 120.00235 * 175.79607 * 15 13 12 18 18 H 1.48500 * 109.46823 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47267 * 120.00177 * 17 15 13 20 20 H 1.48497 * 109.47387 * 240.00196 * 17 15 13 21 21 C 1.41339 * 119.49329 * 0.02562 * 12 11 10 22 22 C 1.36484 * 119.96309 * 0.02562 * 21 12 11 23 23 C 1.38656 * 120.50514 * 359.97438 * 22 21 12 24 24 N 1.48017 * 119.74835 * 180.27387 * 23 22 21 25 25 O 1.31704 * 119.99320 * 353.23651 * 24 23 22 26 26 O 1.31699 * 120.00404 * 173.23514 * 24 23 22 27 27 N 1.31856 * 120.76044 * 0.25768 * 5 4 3 28 28 C 1.31879 * 121.72701 * 359.47711 * 27 5 4 29 29 H 1.08998 * 109.46816 * 90.00737 * 1 2 3 30 30 H 1.09004 * 109.46938 * 210.00656 * 1 2 3 31 31 H 1.08997 * 109.47127 * 330.00382 * 1 2 3 32 32 H 1.07995 * 120.78906 * 359.95146 * 3 2 1 33 33 H 1.08000 * 120.41945 * 179.97438 * 4 3 2 34 34 H 1.09000 * 109.47501 * 300.00462 * 8 6 5 35 35 H 1.09007 * 109.46845 * 60.00472 * 8 6 5 36 36 H 1.08996 * 109.47379 * 179.97438 * 8 6 5 37 37 H 0.96999 * 119.99796 * 334.99754 * 9 6 5 38 38 H 1.08002 * 120.23947 * 359.97438 * 11 10 9 39 39 H 0.96994 * 120.00356 * 179.97438 * 16 15 13 40 40 H 1.08004 * 120.01780 * 179.97438 * 21 12 11 41 41 H 1.08001 * 119.74679 * 179.97438 * 22 21 12 42 42 H 1.08004 * 119.61844 * 180.26513 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1959 0.0000 4 6 3.5946 1.1475 0.0005 5 6 4.2257 -0.0823 0.0016 6 6 5.7313 -0.1468 0.0016 7 1 6.1303 0.6782 -0.5885 8 6 6.2462 -0.0418 1.4386 9 7 6.1655 -1.4189 -0.5811 10 6 7.4286 -1.5230 -1.1680 11 6 8.3150 -0.4658 -1.0920 12 6 9.5884 -0.5819 -1.6892 13 6 10.5007 0.4825 -1.6218 14 1 10.5271 1.1166 -0.7479 15 6 11.4173 0.7334 -2.7370 16 7 11.4425 -0.0745 -3.7490 17 14 12.5497 2.2186 -2.6993 18 1 12.3288 2.9776 -1.4422 19 1 13.9626 1.7656 -2.7617 20 1 12.2584 3.0929 -3.8637 21 6 9.9375 -1.7779 -2.3565 22 6 9.0451 -2.8087 -2.4198 23 6 7.7942 -2.6937 -1.8328 24 7 6.8417 -3.8243 -1.9062 25 8 7.1291 -4.8808 -2.6383 26 8 5.7070 -3.7738 -1.2396 27 7 3.5255 -1.1996 -0.0030 28 6 2.2067 -1.1916 0.0015 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5140 31 1 -0.3633 0.8900 0.5138 32 1 1.6890 2.1423 -0.0008 33 1 4.1736 2.0592 0.0001 34 1 5.9231 0.9047 1.8721 35 1 5.8472 -0.8668 2.0287 36 1 7.3352 -0.0889 1.4387 37 1 5.5759 -2.1887 -0.5591 38 1 8.0349 0.4430 -0.5800 39 1 12.0490 0.0918 -4.4875 40 1 10.9096 -1.8758 -2.8169 41 1 9.3154 -3.7208 -2.9310 42 1 1.6673 -2.1273 0.0018 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168858861.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:32 Heat of formation + Delta-G solvation = 66.080138 kcal Electronic energy + Delta-G solvation = -27087.667382 eV Core-core repulsion = 23229.158106 eV Total energy + Delta-G solvation = -3858.509276 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.43584 -38.87403 -36.80162 -36.16341 -34.22009 -33.36555 -32.83856 -32.10158 -30.86926 -30.19273 -27.71856 -27.10494 -26.72599 -23.91507 -23.73400 -22.89303 -21.61950 -20.93124 -20.07724 -18.20964 -17.23513 -16.80577 -16.49979 -16.41723 -15.76365 -15.23561 -15.03679 -14.70195 -14.55095 -14.41085 -13.83231 -13.56289 -13.45179 -13.18031 -13.12397 -12.73278 -12.65828 -12.42782 -12.26842 -12.16696 -12.01966 -11.69510 -11.64541 -11.38854 -11.08155 -11.00033 -10.62568 -10.05058 -9.92248 -9.80489 -9.76503 -9.47786 -9.43930 -9.34137 -9.24025 -8.74642 -8.14458 -7.51573 -6.76722 -5.10626 0.86627 1.05707 1.28204 2.42384 2.68107 2.75151 2.81506 2.87629 2.90854 3.38848 3.74812 3.97324 4.03105 4.26854 4.66390 4.73741 4.91507 4.94576 5.04016 5.28322 5.36276 5.36992 5.49965 5.52141 5.71560 5.73928 5.76190 5.83613 6.05844 6.06525 6.16387 6.18449 6.33317 6.38691 6.42014 6.57917 6.63682 6.70407 6.93342 7.17997 7.35801 7.44492 7.56164 7.78875 7.98583 8.09841 8.13829 8.35388 8.40118 8.83698 9.32743 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.012506 B = 0.003591 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2238.375721 B = 7795.189725 C = 9509.207685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.149 4.149 3 C -0.077 4.077 4 C -0.162 4.162 5 C 0.125 3.875 6 C 0.195 3.805 7 H 0.094 0.906 8 C -0.162 4.162 9 N -0.721 5.721 10 C 0.302 3.698 11 C -0.316 4.316 12 C 0.145 3.855 13 C -0.394 4.394 14 H 0.100 0.900 15 C 0.062 3.938 16 N -0.730 5.730 17 Si 0.934 3.066 18 H -0.251 1.251 19 H -0.264 1.264 20 H -0.265 1.265 21 C -0.166 4.166 22 C -0.041 4.041 23 C -0.146 4.146 24 N 0.053 4.947 25 O -0.308 6.308 26 O -0.320 6.320 27 N -0.462 5.462 28 C 0.106 3.894 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.133 0.867 33 H 0.136 0.864 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.075 0.925 37 H 0.425 0.575 38 H 0.117 0.883 39 H 0.300 0.700 40 H 0.141 0.859 41 H 0.120 0.880 42 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.208 9.923 5.644 14.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.151 4.151 3 C -0.103 4.103 4 C -0.182 4.182 5 C -0.014 4.014 6 C 0.087 3.913 7 H 0.112 0.888 8 C -0.221 4.221 9 N -0.369 5.369 10 C 0.193 3.807 11 C -0.342 4.342 12 C 0.140 3.860 13 C -0.421 4.421 14 H 0.118 0.882 15 C -0.168 4.168 16 N -0.350 5.350 17 Si 0.756 3.244 18 H -0.174 1.174 19 H -0.189 1.189 20 H -0.190 1.190 21 C -0.187 4.187 22 C -0.062 4.062 23 C -0.252 4.252 24 N 0.474 4.526 25 O -0.466 6.466 26 O -0.466 6.466 27 N -0.170 5.170 28 C -0.052 4.052 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.151 0.849 33 H 0.154 0.846 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.094 0.906 37 H 0.280 0.720 38 H 0.135 0.865 39 H 0.113 0.887 40 H 0.158 0.842 41 H 0.138 0.862 42 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -7.701 9.245 5.497 13.229 hybrid contribution -0.517 0.787 -0.261 0.977 sum -8.218 10.032 5.236 13.986 Atomic orbital electron populations 1.20689 0.90344 1.02906 1.02491 1.20938 0.97500 0.94369 1.02313 1.21402 0.93822 0.98056 0.96974 1.21859 0.95167 0.98826 1.02395 1.21423 0.96365 0.88749 0.94845 1.19702 0.86838 0.89476 0.95265 0.88805 1.22255 1.02770 1.01650 0.95378 1.46169 1.15902 1.14053 1.60749 1.17332 0.85406 0.90903 0.87098 1.20457 0.94686 0.98755 1.20345 1.17704 0.90143 0.91247 0.86890 1.21336 1.10295 1.09349 1.01105 0.88246 1.27820 0.95979 0.98666 0.94289 1.69071 1.27720 1.32923 1.05253 0.85806 0.78775 0.79311 0.80545 1.17374 1.18890 1.18955 1.21387 1.00404 0.91972 1.04979 1.20080 0.90190 0.99723 0.96162 1.19656 0.93676 0.87716 1.24199 1.50017 1.01601 1.02676 0.98348 1.96109 1.84361 1.23362 1.42775 1.95738 1.12962 1.88399 1.49511 1.67402 1.08112 1.30787 1.10675 1.22710 0.89659 0.97510 0.95309 0.91029 0.91208 0.91536 0.84943 0.84575 0.92141 0.92234 0.90647 0.72027 0.86531 0.88681 0.84165 0.86201 0.82799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.81 10.04 36.01 0.36 -0.45 16 2 C -0.15 -1.65 5.90 -104.48 -0.62 -2.27 16 3 C -0.08 -0.82 9.86 -39.28 -0.39 -1.21 16 4 C -0.16 -1.99 9.77 -39.44 -0.39 -2.38 16 5 C 0.12 1.95 5.89 -82.59 -0.49 1.46 16 6 C 0.19 3.23 2.50 -69.08 -0.17 3.06 16 7 H 0.09 1.48 6.73 -51.93 -0.35 1.13 16 8 C -0.16 -2.34 9.30 37.16 0.35 -1.99 16 9 N -0.72 -15.15 5.11 -53.32 -0.27 -15.43 16 10 C 0.30 6.91 6.61 -83.84 -0.55 6.36 16 11 C -0.32 -6.78 8.45 -38.51 -0.33 -7.11 16 12 C 0.15 3.26 5.59 -106.83 -0.60 2.66 16 13 C -0.39 -8.22 9.28 -35.45 -0.33 -8.55 16 14 H 0.10 1.91 7.94 -52.49 -0.42 1.49 16 15 C 0.06 1.21 5.59 -15.19 -0.08 1.12 16 16 N -0.73 -14.84 10.71 55.98 0.60 -14.24 16 17 Si 0.93 14.27 29.65 -169.99 -5.04 9.23 16 18 H -0.25 -3.78 7.11 56.52 0.40 -3.38 16 19 H -0.26 -4.00 7.11 56.52 0.40 -3.60 16 20 H -0.26 -4.06 7.11 56.52 0.40 -3.66 16 21 C -0.17 -3.80 8.70 -39.04 -0.34 -4.14 16 22 C -0.04 -0.98 9.50 -40.06 -0.38 -1.36 16 23 C -0.15 -3.66 6.92 -79.32 -0.55 -4.21 16 24 N 0.05 1.43 4.98 34.27 0.17 1.60 16 25 O -0.31 -8.54 19.14 -31.57 -0.60 -9.14 16 26 O -0.32 -8.62 16.29 -31.57 -0.51 -9.14 16 27 N -0.46 -7.88 9.03 -9.47 -0.09 -7.96 16 28 C 0.11 1.45 10.86 -17.55 -0.19 1.26 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 31 H 0.07 0.41 8.10 -51.93 -0.42 -0.01 16 32 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 33 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.07 1.14 7.19 -51.93 -0.37 0.76 16 37 H 0.42 9.71 3.82 -42.08 -0.16 9.54 16 38 H 0.12 2.23 5.83 -52.49 -0.31 1.92 16 39 H 0.30 5.35 8.27 -40.82 -0.34 5.01 16 40 H 0.14 3.17 6.14 -52.48 -0.32 2.85 16 41 H 0.12 2.73 7.57 -52.49 -0.40 2.34 16 42 H 0.15 1.80 8.06 -52.48 -0.42 1.37 16 LS Contribution 359.27 15.07 5.41 5.41 Total: -1.00 -29.36 359.27 -9.86 -39.22 By element: Atomic # 1 Polarization: 23.01 SS G_CDS: -4.84 Total: 18.17 kcal Atomic # 6 Polarization: -13.04 SS G_CDS: -4.69 Total: -17.74 kcal Atomic # 7 Polarization: -36.43 SS G_CDS: 0.41 Total: -36.02 kcal Atomic # 8 Polarization: -17.16 SS G_CDS: -1.12 Total: -18.28 kcal Atomic # 14 Polarization: 14.27 SS G_CDS: -5.04 Total: 9.23 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.36 -9.86 -39.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168858861.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.303 kcal (2) G-P(sol) polarization free energy of solvation -29.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds