Wall clock time and date at job start Tue Mar 31 2020 14:26:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38675 * 120.41687 * 2 1 4 4 C 1.38631 * 118.41839 * 179.97438 * 3 2 1 5 5 C 1.38228 * 119.16303 * 359.97438 * 4 3 2 6 6 C 1.50699 * 119.61950 * 179.97438 * 5 4 3 7 7 H 1.09007 * 109.46940 * 325.00370 * 6 5 4 8 8 C 1.53003 * 109.46992 * 84.99840 * 6 5 4 9 9 N 1.46499 * 109.47156 * 205.00308 * 6 5 4 10 10 C 1.39668 * 119.99825 * 155.00468 * 9 6 5 11 11 C 1.38174 * 119.99445 * 5.90325 * 10 9 6 12 12 C 1.41127 * 119.50804 * 180.02562 * 11 10 9 13 13 C 1.40354 * 120.25113 * 179.97438 * 12 11 10 14 14 H 1.08001 * 119.99957 * 33.95368 * 13 12 11 15 15 C 1.46521 * 120.00063 * 213.94765 * 13 12 11 16 16 N 1.29520 * 120.00117 * 355.80042 * 15 13 12 17 17 Si 1.86801 * 120.00235 * 175.79607 * 15 13 12 18 18 H 1.48500 * 109.46823 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47267 * 120.00177 * 17 15 13 20 20 H 1.48497 * 109.47387 * 240.00196 * 17 15 13 21 21 C 1.41339 * 119.49329 * 0.02562 * 12 11 10 22 22 C 1.36484 * 119.96309 * 0.02562 * 21 12 11 23 23 C 1.38656 * 120.50514 * 359.97438 * 22 21 12 24 24 N 1.48017 * 119.74835 * 180.27387 * 23 22 21 25 25 O 1.31704 * 119.99320 * 353.23651 * 24 23 22 26 26 O 1.31699 * 120.00404 * 173.23514 * 24 23 22 27 27 N 1.31856 * 120.76044 * 0.25768 * 5 4 3 28 28 C 1.31879 * 121.72701 * 359.47711 * 27 5 4 29 29 H 1.08998 * 109.46816 * 90.00737 * 1 2 3 30 30 H 1.09004 * 109.46938 * 210.00656 * 1 2 3 31 31 H 1.08997 * 109.47127 * 330.00382 * 1 2 3 32 32 H 1.07995 * 120.78906 * 359.95146 * 3 2 1 33 33 H 1.08000 * 120.41945 * 179.97438 * 4 3 2 34 34 H 1.09000 * 109.47501 * 300.00462 * 8 6 5 35 35 H 1.09007 * 109.46845 * 60.00472 * 8 6 5 36 36 H 1.08996 * 109.47379 * 179.97438 * 8 6 5 37 37 H 0.96999 * 119.99796 * 334.99754 * 9 6 5 38 38 H 1.08002 * 120.23947 * 359.97438 * 11 10 9 39 39 H 0.96994 * 120.00356 * 179.97438 * 16 15 13 40 40 H 1.08004 * 120.01780 * 179.97438 * 21 12 11 41 41 H 1.08001 * 119.74679 * 179.97438 * 22 21 12 42 42 H 1.08004 * 119.61844 * 180.26513 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1959 0.0000 4 6 3.5946 1.1475 0.0005 5 6 4.2257 -0.0823 0.0016 6 6 5.7313 -0.1468 0.0016 7 1 6.1303 0.6782 -0.5885 8 6 6.2462 -0.0418 1.4386 9 7 6.1655 -1.4189 -0.5811 10 6 7.4286 -1.5230 -1.1680 11 6 8.3150 -0.4658 -1.0920 12 6 9.5884 -0.5819 -1.6892 13 6 10.5007 0.4825 -1.6218 14 1 10.5271 1.1166 -0.7479 15 6 11.4173 0.7334 -2.7370 16 7 11.4425 -0.0745 -3.7490 17 14 12.5497 2.2186 -2.6993 18 1 12.3288 2.9776 -1.4422 19 1 13.9626 1.7656 -2.7617 20 1 12.2584 3.0929 -3.8637 21 6 9.9375 -1.7779 -2.3565 22 6 9.0451 -2.8087 -2.4198 23 6 7.7942 -2.6937 -1.8328 24 7 6.8417 -3.8243 -1.9062 25 8 7.1291 -4.8808 -2.6383 26 8 5.7070 -3.7738 -1.2396 27 7 3.5255 -1.1996 -0.0030 28 6 2.2067 -1.1916 0.0015 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5140 31 1 -0.3633 0.8900 0.5138 32 1 1.6890 2.1423 -0.0008 33 1 4.1736 2.0592 0.0001 34 1 5.9231 0.9047 1.8721 35 1 5.8472 -0.8668 2.0287 36 1 7.3352 -0.0889 1.4387 37 1 5.5759 -2.1887 -0.5591 38 1 8.0349 0.4430 -0.5800 39 1 12.0490 0.0918 -4.4875 40 1 10.9096 -1.8758 -2.8169 41 1 9.3154 -3.7208 -2.9310 42 1 1.6673 -2.1273 0.0018 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168858861.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:31 Heat of formation + Delta-G solvation = 50.289329 kcal Electronic energy + Delta-G solvation = -27088.352122 eV Core-core repulsion = 23229.158106 eV Total energy + Delta-G solvation = -3859.194017 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.47887 -40.53540 -38.55221 -37.60782 -35.82208 -34.85491 -34.21116 -33.28329 -32.51928 -31.52214 -29.32940 -28.61731 -27.88315 -25.53733 -24.86760 -24.08383 -23.01230 -22.58959 -21.42755 -19.82697 -18.95500 -18.52679 -17.87292 -17.62322 -17.30297 -16.53295 -16.38588 -16.04126 -15.91760 -15.60394 -15.10317 -14.96285 -14.85431 -14.51522 -14.13352 -13.97677 -13.88303 -13.81175 -13.44920 -13.29254 -13.14926 -12.99485 -12.93640 -12.66996 -12.65113 -12.15672 -11.92121 -11.76203 -11.63176 -11.46615 -11.44465 -11.22428 -10.95753 -10.73113 -10.32295 -9.94310 -9.71161 -9.13705 -8.48933 -6.84120 -1.09207 0.09901 0.37554 0.77988 1.09224 1.10625 1.43270 1.54644 1.65753 2.10431 2.37599 2.54076 2.81378 3.22197 3.27185 3.76320 3.92912 3.94127 4.07635 4.09536 4.24524 4.30947 4.45878 4.46585 4.52985 4.62786 4.67043 4.74417 4.82580 4.86359 4.87972 4.91187 4.96155 5.10911 5.16977 5.19372 5.29124 5.34191 5.45259 5.63129 5.65249 5.75039 5.79911 6.09770 6.28340 6.34167 6.52658 6.65268 7.03580 7.17082 7.73368 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.012506 B = 0.003591 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2238.375721 B = 7795.189725 C = 9509.207685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.139 4.139 3 C -0.074 4.074 4 C -0.156 4.156 5 C 0.092 3.908 6 C 0.187 3.813 7 H 0.106 0.894 8 C -0.152 4.152 9 N -0.724 5.724 10 C 0.280 3.720 11 C -0.303 4.303 12 C 0.096 3.904 13 C -0.341 4.341 14 H 0.131 0.869 15 C 0.023 3.977 16 N -0.739 5.739 17 Si 1.012 2.988 18 H -0.238 1.238 19 H -0.260 1.260 20 H -0.262 1.262 21 C -0.136 4.136 22 C -0.077 4.077 23 C -0.136 4.136 24 N 0.052 4.948 25 O -0.404 6.404 26 O -0.381 6.381 27 N -0.512 5.512 28 C 0.077 3.923 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.173 0.827 33 H 0.167 0.833 34 H 0.096 0.904 35 H 0.039 0.961 36 H 0.069 0.931 37 H 0.416 0.584 38 H 0.146 0.854 39 H 0.319 0.681 40 H 0.145 0.855 41 H 0.113 0.887 42 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.139 16.753 6.369 18.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.141 4.141 3 C -0.100 4.100 4 C -0.176 4.176 5 C -0.046 4.046 6 C 0.081 3.919 7 H 0.124 0.876 8 C -0.210 4.210 9 N -0.369 5.369 10 C 0.169 3.831 11 C -0.332 4.332 12 C 0.090 3.910 13 C -0.366 4.366 14 H 0.149 0.851 15 C -0.207 4.207 16 N -0.359 5.359 17 Si 0.829 3.171 18 H -0.160 1.160 19 H -0.184 1.184 20 H -0.187 1.187 21 C -0.158 4.158 22 C -0.097 4.097 23 C -0.250 4.250 24 N 0.441 4.559 25 O -0.536 6.536 26 O -0.510 6.510 27 N -0.221 5.221 28 C -0.080 4.080 29 H 0.098 0.902 30 H 0.093 0.907 31 H 0.108 0.892 32 H 0.191 0.809 33 H 0.184 0.816 34 H 0.115 0.885 35 H 0.058 0.942 36 H 0.088 0.912 37 H 0.268 0.732 38 H 0.163 0.837 39 H 0.133 0.867 40 H 0.162 0.838 41 H 0.131 0.869 42 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -5.824 15.825 6.198 17.965 hybrid contribution -0.560 -0.618 -0.554 1.001 sum -6.383 15.207 5.644 17.431 Atomic orbital electron populations 1.20770 0.87657 1.04355 1.03388 1.21314 0.99355 0.93557 0.99905 1.21893 0.93354 0.99360 0.95372 1.22163 0.96220 0.98341 1.00840 1.21434 0.95776 0.89875 0.97466 1.20036 0.88217 0.87502 0.96127 0.87643 1.22172 1.02122 1.02772 0.93973 1.46406 1.15038 1.15577 1.59860 1.17559 0.86845 0.90654 0.88040 1.20601 0.93831 0.99015 1.19705 1.18037 0.91699 0.91990 0.89249 1.22199 1.06900 1.06481 1.01033 0.85149 1.28946 0.96938 1.01645 0.93184 1.69058 1.27194 1.33957 1.05645 0.84653 0.76292 0.75039 0.81115 1.15981 1.18388 1.18686 1.21563 0.99860 0.91942 1.02472 1.20098 0.90629 1.00477 0.98498 1.20247 0.93624 0.87863 1.23289 1.49991 1.02274 1.03288 1.00300 1.96026 1.85526 1.25460 1.46601 1.95669 1.14437 1.89122 1.51756 1.67253 1.09908 1.32592 1.12298 1.22957 0.89081 0.99202 0.96806 0.90209 0.90662 0.89243 0.80936 0.81579 0.88507 0.94180 0.91189 0.73227 0.83669 0.86723 0.83756 0.86877 0.82583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.34 10.04 71.24 0.72 -0.63 16 2 C -0.14 -2.91 5.90 -19.77 -0.12 -3.03 16 3 C -0.07 -1.36 9.86 22.47 0.22 -1.14 16 4 C -0.16 -3.46 9.77 22.36 0.22 -3.24 16 5 C 0.09 2.90 5.89 42.55 0.25 3.16 16 6 C 0.19 6.19 2.50 44.25 0.11 6.30 16 7 H 0.11 3.13 6.73 -2.38 -0.02 3.11 16 8 C -0.15 -4.25 9.30 71.98 0.67 -3.58 16 9 N -0.72 -32.12 5.11 -322.62 -1.65 -33.77 16 10 C 0.28 13.28 6.61 38.18 0.25 13.53 16 11 C -0.30 -12.56 8.45 22.96 0.19 -12.37 16 12 C 0.10 4.05 5.59 -21.29 -0.12 3.93 16 13 C -0.34 -12.34 9.28 24.95 0.23 -12.11 16 14 H 0.13 4.03 7.94 -2.91 -0.02 4.01 16 15 C 0.02 0.75 5.59 87.19 0.49 1.24 16 16 N -0.74 -26.93 10.71 23.21 0.25 -26.68 16 17 Si 1.01 23.57 29.65 68.60 2.03 25.61 16 18 H -0.24 -5.14 7.11 99.48 0.71 -4.43 16 19 H -0.26 -5.98 7.11 99.48 0.71 -5.27 16 20 H -0.26 -6.14 7.11 99.48 0.71 -5.43 16 21 C -0.14 -6.17 8.70 22.62 0.20 -5.98 16 22 C -0.08 -3.85 9.50 21.96 0.21 -3.64 16 23 C -0.14 -7.31 6.92 36.78 0.25 -7.06 16 24 N 0.05 3.13 4.98 -45.50 -0.23 2.90 16 25 O -0.40 -25.58 19.14 3.51 0.07 -25.51 16 26 O -0.38 -23.20 16.29 3.52 0.06 -23.14 16 27 N -0.51 -18.59 9.03 -183.89 -1.66 -20.25 16 28 C 0.08 2.21 10.86 84.67 0.92 3.13 16 29 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.07 0.90 8.09 -2.39 -0.02 0.88 16 31 H 0.09 0.77 8.10 -2.39 -0.02 0.75 16 32 H 0.17 1.75 8.06 -2.91 -0.02 1.73 16 33 H 0.17 2.54 8.06 -2.91 -0.02 2.52 16 34 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.04 1.26 8.14 -2.38 -0.02 1.24 16 36 H 0.07 2.00 7.19 -2.39 -0.02 1.98 16 37 H 0.42 20.78 3.82 -112.72 -0.43 20.35 16 38 H 0.15 5.04 5.83 -2.91 -0.02 5.02 16 39 H 0.32 9.93 8.27 -92.71 -0.77 9.17 16 40 H 0.14 6.32 6.14 -2.91 -0.02 6.30 16 41 H 0.11 5.68 7.57 -2.91 -0.02 5.65 16 42 H 0.16 4.07 8.06 -2.91 -0.02 4.04 16 Total: -1.00 -72.05 359.27 4.21 -67.84 By element: Atomic # 1 Polarization: 53.85 SS G_CDS: 0.64 Total: 54.49 kcal Atomic # 6 Polarization: -26.18 SS G_CDS: 4.69 Total: -21.48 kcal Atomic # 7 Polarization: -74.51 SS G_CDS: -3.29 Total: -77.80 kcal Atomic # 8 Polarization: -48.78 SS G_CDS: 0.12 Total: -48.66 kcal Atomic # 14 Polarization: 23.57 SS G_CDS: 2.03 Total: 25.61 kcal Total: -72.05 4.21 -67.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168858861.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.130 kcal (2) G-P(sol) polarization free energy of solvation -72.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds