Wall clock time and date at job start Tue Mar 31 2020 14:39:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38668 * 120.79034 * 2 1 4 4 C 1.38186 * 119.16268 * 179.97438 * 3 2 1 5 5 N 1.31885 * 120.76535 * 359.97438 * 4 3 2 6 6 C 1.31851 * 121.72543 * 0.02562 * 5 4 3 7 7 C 1.50700 * 119.62005 * 180.02562 * 6 5 4 8 8 C 1.53004 * 109.47110 * 304.99976 * 7 6 5 9 9 N 1.46497 * 109.47414 * 179.97438 * 8 7 6 10 10 C 1.39675 * 120.00029 * 179.97438 * 9 8 7 11 11 C 1.38171 * 119.99031 * 7.05062 * 10 9 8 12 12 C 1.41125 * 119.50347 * 179.97438 * 11 10 9 13 13 C 1.40360 * 120.25300 * 179.97438 * 12 11 10 14 14 H 1.07994 * 120.00023 * 337.36949 * 13 12 11 15 15 C 1.46528 * 120.00161 * 157.37377 * 13 12 11 16 16 N 1.29515 * 119.99658 * 343.72956 * 15 13 12 17 17 Si 1.86797 * 119.99963 * 163.73221 * 15 13 12 18 18 H 1.48505 * 109.47316 * 359.97438 * 17 15 13 19 19 H 1.48491 * 109.47232 * 119.99972 * 17 15 13 20 20 H 1.48503 * 109.46830 * 240.00043 * 17 15 13 21 21 C 1.41338 * 119.49852 * 359.97438 * 12 11 10 22 22 C 1.36493 * 119.95754 * 359.97438 * 21 12 11 23 23 C 1.38657 * 120.50489 * 0.28000 * 22 21 12 24 24 N 1.48015 * 119.74271 * 179.72334 * 23 22 21 25 25 O 1.31703 * 120.00177 * 37.98614 * 24 23 22 26 26 O 1.31700 * 120.00171 * 217.98705 * 24 23 22 27 27 C 1.38227 * 120.76622 * 0.26880 * 6 5 4 28 28 H 1.08999 * 109.47201 * 90.00139 * 1 2 3 29 29 H 1.09004 * 109.47316 * 210.00423 * 1 2 3 30 30 H 1.09004 * 109.47059 * 330.00333 * 1 2 3 31 31 H 1.07996 * 120.41951 * 359.97438 * 3 2 1 32 32 H 1.08006 * 119.61684 * 179.97438 * 4 3 2 33 33 H 1.08993 * 109.47399 * 185.00122 * 7 6 5 34 34 H 1.09001 * 109.47442 * 64.99276 * 7 6 5 35 35 H 1.08998 * 109.47253 * 59.99217 * 8 7 6 36 36 H 1.09006 * 109.46867 * 299.99974 * 8 7 6 37 37 H 0.97005 * 119.99913 * 359.97438 * 9 8 7 38 38 H 1.07995 * 120.24826 * 0.02562 * 11 10 9 39 39 H 0.97001 * 119.99038 * 179.97438 * 16 15 13 40 40 H 1.08000 * 120.02481 * 179.97438 * 21 12 11 41 41 H 1.08006 * 119.74395 * 180.02562 * 22 21 12 42 42 H 1.08000 * 120.42166 * 179.70599 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1912 0.0000 4 6 3.5981 1.1520 0.0005 5 7 4.2403 0.0000 0.0016 6 6 3.5983 -1.1516 0.0016 7 6 4.3799 -2.4401 0.0034 8 6 5.3532 -2.4478 -1.1772 9 7 6.1135 -3.7000 -1.1752 10 6 7.0697 -3.9380 -2.1650 11 6 7.4031 -2.9378 -3.0581 12 6 8.3710 -3.1893 -4.0538 13 6 8.7212 -2.1848 -4.9694 14 1 8.0372 -1.3729 -5.1681 15 6 10.0146 -2.2376 -5.6559 16 7 10.9550 -3.0067 -5.2069 17 14 10.3071 -1.1957 -7.1785 18 1 9.0839 -0.4109 -7.4838 19 1 11.4418 -0.2696 -6.9340 20 1 10.6279 -2.0789 -8.3284 21 6 8.9852 -4.4605 -4.1221 22 6 8.6405 -5.4328 -3.2283 23 6 7.6856 -5.1865 -2.2536 24 7 7.3203 -6.2551 -1.2969 25 8 8.2472 -7.0657 -0.8295 26 8 6.0684 -6.3955 -0.9128 27 6 2.2166 -1.1910 -0.0050 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 1.6967 2.1377 -0.0004 32 1 4.1583 2.0754 0.0001 33 1 3.6933 -3.2818 -0.0864 34 1 4.9387 -2.5248 0.9354 35 1 6.0398 -1.6060 -1.0875 36 1 4.7944 -2.3630 -2.1093 37 1 5.9528 -4.3639 -0.4863 38 1 6.9271 -1.9705 -2.9941 39 1 11.8111 -3.0419 -5.6617 40 1 9.7267 -4.6623 -4.8809 41 1 9.1123 -6.4028 -3.2834 42 1 1.6964 -2.1374 -0.0097 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169320716.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:00 Heat of formation + Delta-G solvation = 53.594959 kcal Electronic energy + Delta-G solvation = -26202.278310 eV Core-core repulsion = 22343.227636 eV Total energy + Delta-G solvation = -3859.050674 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.46526 -38.84928 -36.86847 -35.99711 -34.42595 -33.91763 -33.04777 -32.54208 -30.76499 -29.62086 -28.10521 -27.34044 -26.82534 -24.10391 -23.40082 -23.21475 -21.20586 -20.79465 -20.23761 -18.17484 -17.18546 -16.79991 -16.76829 -16.36761 -15.92429 -15.66202 -15.47181 -15.01066 -14.76340 -14.29243 -14.06109 -13.69992 -13.43714 -13.32001 -13.03516 -12.94218 -12.83252 -12.71150 -12.46742 -12.11497 -11.77649 -11.62980 -11.59786 -11.44707 -11.24937 -11.04311 -10.61256 -10.08945 -10.01562 -9.81812 -9.67008 -9.65748 -9.53939 -9.50195 -9.20721 -9.09443 -8.22140 -7.57468 -6.81159 -5.05013 0.86246 0.96040 1.09418 2.35711 2.68393 2.76018 2.78763 2.81422 2.88614 3.38721 3.59401 3.88100 3.92828 4.24094 4.45281 4.54304 4.87367 4.94027 5.09556 5.12745 5.18788 5.23430 5.26535 5.33207 5.55856 5.63408 5.71983 5.76206 5.87035 6.10600 6.11938 6.15925 6.22710 6.35801 6.42603 6.54035 6.58219 6.66072 6.85808 7.20973 7.32888 7.43364 7.51539 7.74207 7.90267 7.97083 8.16867 8.24632 8.35783 8.41314 9.27566 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.009283 B = 0.003329 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3015.580983 B = 8409.072678 C =11009.978755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.042 4.042 3 C -0.184 4.184 4 C 0.107 3.893 5 N -0.481 5.481 6 C 0.144 3.856 7 C -0.083 4.083 8 C 0.141 3.859 9 N -0.745 5.745 10 C 0.301 3.699 11 C -0.307 4.307 12 C 0.139 3.861 13 C -0.387 4.387 14 H 0.099 0.901 15 C 0.064 3.936 16 N -0.717 5.717 17 Si 0.929 3.071 18 H -0.250 1.250 19 H -0.265 1.265 20 H -0.262 1.262 21 C -0.177 4.177 22 C -0.036 4.036 23 C -0.169 4.169 24 N 0.041 4.959 25 O -0.281 6.281 26 O -0.299 6.299 27 C -0.170 4.170 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.132 0.868 32 H 0.156 0.844 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.071 0.929 36 H 0.057 0.943 37 H 0.401 0.599 38 H 0.114 0.886 39 H 0.302 0.698 40 H 0.134 0.866 41 H 0.112 0.888 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.931 11.106 2.000 16.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.050 4.050 3 C -0.204 4.204 4 C -0.050 4.050 5 N -0.191 5.191 6 C 0.007 3.993 7 C -0.121 4.121 8 C 0.016 3.984 9 N -0.380 5.380 10 C 0.195 3.805 11 C -0.334 4.334 12 C 0.134 3.866 13 C -0.412 4.412 14 H 0.117 0.883 15 C -0.168 4.168 16 N -0.336 5.336 17 Si 0.750 3.250 18 H -0.173 1.173 19 H -0.189 1.189 20 H -0.187 1.187 21 C -0.198 4.198 22 C -0.056 4.056 23 C -0.270 4.270 24 N 0.477 4.523 25 O -0.449 6.449 26 O -0.460 6.460 27 C -0.190 4.190 28 H 0.095 0.905 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.150 0.850 32 H 0.173 0.827 33 H 0.105 0.895 34 H 0.106 0.894 35 H 0.089 0.911 36 H 0.075 0.925 37 H 0.240 0.760 38 H 0.132 0.868 39 H 0.115 0.885 40 H 0.152 0.848 41 H 0.130 0.870 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -10.828 11.376 1.799 15.808 hybrid contribution -0.786 -0.167 0.037 0.804 sum -11.614 11.209 1.836 16.245 Atomic orbital electron populations 1.20828 0.90292 1.03241 1.02940 1.20330 0.96731 0.93001 0.94972 1.22017 0.95742 0.98549 1.04080 1.22765 0.91694 0.96118 0.94407 1.67509 1.41245 0.98015 1.12331 1.21061 0.90896 0.93531 0.93859 1.20721 0.98211 0.92770 1.00370 1.21079 0.93167 0.87439 0.96699 1.44917 1.41098 1.20870 1.31136 1.17023 0.85590 0.90208 0.87725 1.20308 1.12571 0.98053 1.02447 1.17589 0.88546 0.91841 0.88645 1.21379 0.98703 1.06494 1.14638 0.88251 1.27830 0.95231 0.95022 0.98683 1.69124 1.03777 1.26237 1.34435 0.85887 0.80337 0.79840 0.78914 1.17252 1.18923 1.18690 1.21130 1.04320 0.92266 1.02106 1.19889 0.93394 0.99479 0.92839 1.19399 1.16336 0.87240 1.03979 1.50127 1.00879 1.01560 0.99693 1.96128 1.41497 1.45610 1.61702 1.96032 0.98922 1.81245 1.69812 1.21906 0.94704 0.98905 1.03480 0.90458 0.90991 0.91103 0.85000 0.82694 0.89462 0.89376 0.91091 0.92519 0.76049 0.86778 0.88534 0.84795 0.87030 0.84721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.73 10.06 36.00 0.36 -0.37 16 2 C -0.04 -0.40 5.92 -104.32 -0.62 -1.01 16 3 C -0.18 -1.67 9.82 -39.44 -0.39 -2.06 16 4 C 0.11 1.16 11.18 -17.55 -0.20 0.96 16 5 N -0.48 -6.55 9.88 -9.47 -0.09 -6.64 16 6 C 0.14 1.86 6.18 -82.59 -0.51 1.35 16 7 C -0.08 -1.10 5.73 -27.88 -0.16 -1.26 16 8 C 0.14 2.32 4.84 -4.04 -0.02 2.30 16 9 N -0.75 -14.89 5.48 -58.67 -0.32 -15.21 16 10 C 0.30 6.91 6.60 -83.84 -0.55 6.36 16 11 C -0.31 -6.94 9.08 -38.51 -0.35 -7.29 16 12 C 0.14 3.23 5.63 -106.83 -0.60 2.63 16 13 C -0.39 -8.39 9.32 -35.44 -0.33 -8.72 16 14 H 0.10 2.02 7.98 -52.49 -0.42 1.60 16 15 C 0.06 1.27 5.35 -15.19 -0.08 1.19 16 16 N -0.72 -14.80 10.88 55.98 0.61 -14.19 16 17 Si 0.93 14.53 29.67 -169.99 -5.04 9.49 16 18 H -0.25 -3.89 7.11 56.52 0.40 -3.49 16 19 H -0.26 -4.09 7.11 56.52 0.40 -3.69 16 20 H -0.26 -4.06 7.11 56.52 0.40 -3.65 16 21 C -0.18 -4.14 8.74 -39.03 -0.34 -4.48 16 22 C -0.04 -0.85 9.60 -40.06 -0.38 -1.24 16 23 C -0.17 -4.17 6.59 -79.33 -0.52 -4.70 16 24 N 0.04 1.06 4.75 34.26 0.16 1.22 16 25 O -0.28 -7.54 19.69 -31.57 -0.62 -8.16 16 26 O -0.30 -7.59 17.48 -31.57 -0.55 -8.14 16 27 C -0.17 -1.83 9.42 -39.44 -0.37 -2.20 16 28 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.40 8.10 -51.93 -0.42 -0.02 16 30 H 0.07 0.36 8.10 -51.93 -0.42 -0.06 16 31 H 0.13 0.84 8.06 -52.49 -0.42 0.41 16 32 H 0.16 1.28 8.06 -52.48 -0.42 0.85 16 33 H 0.09 1.06 7.87 -51.93 -0.41 0.65 16 34 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 35 H 0.07 1.23 7.48 -51.93 -0.39 0.84 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.40 8.19 6.04 -40.82 -0.25 7.94 16 38 H 0.11 2.40 6.71 -52.49 -0.35 2.05 16 39 H 0.30 5.40 8.27 -40.82 -0.34 5.06 16 40 H 0.13 3.07 5.98 -52.49 -0.31 2.75 16 41 H 0.11 2.53 8.02 -52.48 -0.42 2.11 16 42 H 0.13 1.20 7.95 -52.49 -0.42 0.79 16 LS Contribution 366.26 15.07 5.52 5.52 Total: -1.00 -28.78 366.26 -10.46 -39.24 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: -5.06 Total: 15.43 kcal Atomic # 6 Polarization: -13.49 SS G_CDS: -5.06 Total: -18.55 kcal Atomic # 7 Polarization: -35.18 SS G_CDS: 0.36 Total: -34.82 kcal Atomic # 8 Polarization: -15.13 SS G_CDS: -1.17 Total: -16.30 kcal Atomic # 14 Polarization: 14.53 SS G_CDS: -5.04 Total: 9.49 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -28.78 -10.46 -39.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169320716.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.837 kcal (2) G-P(sol) polarization free energy of solvation -28.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds