Wall clock time and date at job start Tue Mar 31 2020 14:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38668 * 120.79034 * 2 1 4 4 C 1.38186 * 119.16268 * 179.97438 * 3 2 1 5 5 N 1.31885 * 120.76535 * 359.97438 * 4 3 2 6 6 C 1.31851 * 121.72543 * 0.02562 * 5 4 3 7 7 C 1.50700 * 119.62005 * 180.02562 * 6 5 4 8 8 C 1.53004 * 109.47110 * 304.99976 * 7 6 5 9 9 N 1.46497 * 109.47414 * 179.97438 * 8 7 6 10 10 C 1.39675 * 120.00029 * 179.97438 * 9 8 7 11 11 C 1.38171 * 119.99031 * 7.05062 * 10 9 8 12 12 C 1.41125 * 119.50347 * 179.97438 * 11 10 9 13 13 C 1.40360 * 120.25300 * 179.97438 * 12 11 10 14 14 H 1.07994 * 120.00023 * 337.36949 * 13 12 11 15 15 C 1.46528 * 120.00161 * 157.37377 * 13 12 11 16 16 N 1.29515 * 119.99658 * 343.72956 * 15 13 12 17 17 Si 1.86797 * 119.99963 * 163.73221 * 15 13 12 18 18 H 1.48505 * 109.47316 * 359.97438 * 17 15 13 19 19 H 1.48491 * 109.47232 * 119.99972 * 17 15 13 20 20 H 1.48503 * 109.46830 * 240.00043 * 17 15 13 21 21 C 1.41338 * 119.49852 * 359.97438 * 12 11 10 22 22 C 1.36493 * 119.95754 * 359.97438 * 21 12 11 23 23 C 1.38657 * 120.50489 * 0.28000 * 22 21 12 24 24 N 1.48015 * 119.74271 * 179.72334 * 23 22 21 25 25 O 1.31703 * 120.00177 * 37.98614 * 24 23 22 26 26 O 1.31700 * 120.00171 * 217.98705 * 24 23 22 27 27 C 1.38227 * 120.76622 * 0.26880 * 6 5 4 28 28 H 1.08999 * 109.47201 * 90.00139 * 1 2 3 29 29 H 1.09004 * 109.47316 * 210.00423 * 1 2 3 30 30 H 1.09004 * 109.47059 * 330.00333 * 1 2 3 31 31 H 1.07996 * 120.41951 * 359.97438 * 3 2 1 32 32 H 1.08006 * 119.61684 * 179.97438 * 4 3 2 33 33 H 1.08993 * 109.47399 * 185.00122 * 7 6 5 34 34 H 1.09001 * 109.47442 * 64.99276 * 7 6 5 35 35 H 1.08998 * 109.47253 * 59.99217 * 8 7 6 36 36 H 1.09006 * 109.46867 * 299.99974 * 8 7 6 37 37 H 0.97005 * 119.99913 * 359.97438 * 9 8 7 38 38 H 1.07995 * 120.24826 * 0.02562 * 11 10 9 39 39 H 0.97001 * 119.99038 * 179.97438 * 16 15 13 40 40 H 1.08000 * 120.02481 * 179.97438 * 21 12 11 41 41 H 1.08006 * 119.74395 * 180.02562 * 22 21 12 42 42 H 1.08000 * 120.42166 * 179.70599 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1912 0.0000 4 6 3.5981 1.1520 0.0005 5 7 4.2403 0.0000 0.0016 6 6 3.5983 -1.1516 0.0016 7 6 4.3799 -2.4401 0.0034 8 6 5.3532 -2.4478 -1.1772 9 7 6.1135 -3.7000 -1.1752 10 6 7.0697 -3.9380 -2.1650 11 6 7.4031 -2.9378 -3.0581 12 6 8.3710 -3.1893 -4.0538 13 6 8.7212 -2.1848 -4.9694 14 1 8.0372 -1.3729 -5.1681 15 6 10.0146 -2.2376 -5.6559 16 7 10.9550 -3.0067 -5.2069 17 14 10.3071 -1.1957 -7.1785 18 1 9.0839 -0.4109 -7.4838 19 1 11.4418 -0.2696 -6.9340 20 1 10.6279 -2.0789 -8.3284 21 6 8.9852 -4.4605 -4.1221 22 6 8.6405 -5.4328 -3.2283 23 6 7.6856 -5.1865 -2.2536 24 7 7.3203 -6.2551 -1.2969 25 8 8.2472 -7.0657 -0.8295 26 8 6.0684 -6.3955 -0.9128 27 6 2.2166 -1.1910 -0.0050 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 1.6967 2.1377 -0.0004 32 1 4.1583 2.0754 0.0001 33 1 3.6933 -3.2818 -0.0864 34 1 4.9387 -2.5248 0.9354 35 1 6.0398 -1.6060 -1.0875 36 1 4.7944 -2.3630 -2.1093 37 1 5.9528 -4.3639 -0.4863 38 1 6.9271 -1.9705 -2.9941 39 1 11.8111 -3.0419 -5.6617 40 1 9.7267 -4.6623 -4.8809 41 1 9.1123 -6.4028 -3.2834 42 1 1.6964 -2.1374 -0.0097 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169320716.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:59 Heat of formation + Delta-G solvation = 39.248227 kcal Electronic energy + Delta-G solvation = -26202.900431 eV Core-core repulsion = 22343.227636 eV Total energy + Delta-G solvation = -3859.672795 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.29362 -40.59967 -38.68393 -37.49062 -35.84809 -35.03479 -34.72904 -33.76386 -32.54384 -30.95040 -28.93978 -28.70069 -28.52066 -25.68497 -24.87109 -24.04040 -22.74827 -22.38389 -21.47029 -19.83880 -19.01325 -18.64912 -17.70251 -17.58507 -17.16588 -17.05259 -16.77480 -16.17770 -16.09495 -15.66551 -15.24717 -15.12578 -14.88173 -14.76398 -14.15485 -14.03863 -13.86095 -13.73203 -13.45514 -13.33683 -13.23893 -12.97822 -12.87880 -12.77671 -12.53033 -12.27220 -11.96754 -11.92486 -11.79663 -11.55882 -11.46824 -11.40109 -10.90822 -10.39738 -10.36454 -10.04206 -9.92069 -9.19436 -8.55075 -6.82981 -1.09820 0.15396 0.33461 0.68329 0.95182 1.05872 1.38502 1.49933 1.60674 2.07633 2.30419 2.38092 2.81888 3.29375 3.36019 3.66126 3.87449 3.91190 4.00880 4.08631 4.20723 4.27069 4.41791 4.46905 4.52451 4.60290 4.63240 4.69805 4.79098 4.81066 4.82994 4.86163 4.93153 4.93922 5.06829 5.09556 5.25686 5.41191 5.43078 5.56453 5.63760 5.67574 5.82170 6.01175 6.23223 6.35369 6.37466 6.60419 6.69076 7.07764 7.69619 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.009283 B = 0.003329 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3015.580983 B = 8409.072678 C =11009.978755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.046 4.046 3 C -0.177 4.177 4 C 0.091 3.909 5 N -0.517 5.517 6 C 0.121 3.879 7 C -0.073 4.073 8 C 0.146 3.854 9 N -0.740 5.740 10 C 0.288 3.712 11 C -0.309 4.309 12 C 0.097 3.903 13 C -0.357 4.357 14 H 0.119 0.881 15 C 0.027 3.973 16 N -0.731 5.731 17 Si 1.007 2.993 18 H -0.244 1.244 19 H -0.257 1.257 20 H -0.256 1.256 21 C -0.161 4.161 22 C -0.060 4.060 23 C -0.175 4.175 24 N 0.045 4.955 25 O -0.354 6.354 26 O -0.326 6.326 27 C -0.177 4.177 28 H 0.086 0.914 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.164 0.836 32 H 0.175 0.825 33 H 0.097 0.903 34 H 0.082 0.918 35 H 0.062 0.938 36 H 0.057 0.943 37 H 0.398 0.602 38 H 0.128 0.872 39 H 0.320 0.680 40 H 0.139 0.861 41 H 0.112 0.888 42 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.664 15.070 -0.597 19.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.054 4.054 3 C -0.196 4.196 4 C -0.065 4.065 5 N -0.228 5.228 6 C -0.016 4.016 7 C -0.112 4.112 8 C 0.022 3.978 9 N -0.373 5.373 10 C 0.180 3.820 11 C -0.337 4.337 12 C 0.092 3.908 13 C -0.382 4.382 14 H 0.137 0.863 15 C -0.204 4.204 16 N -0.350 5.350 17 Si 0.823 3.177 18 H -0.166 1.166 19 H -0.181 1.181 20 H -0.180 1.180 21 C -0.183 4.183 22 C -0.080 4.080 23 C -0.281 4.281 24 N 0.461 4.539 25 O -0.503 6.503 26 O -0.479 6.479 27 C -0.196 4.196 28 H 0.104 0.896 29 H 0.096 0.904 30 H 0.106 0.894 31 H 0.182 0.818 32 H 0.192 0.808 33 H 0.116 0.884 34 H 0.100 0.900 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.235 0.765 38 H 0.146 0.854 39 H 0.134 0.866 40 H 0.157 0.843 41 H 0.130 0.870 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -11.567 15.178 -0.640 19.094 hybrid contribution -0.388 -0.900 0.445 1.076 sum -11.955 14.278 -0.195 18.623 Atomic orbital electron populations 1.20895 0.87903 1.04445 1.03803 1.20753 0.98453 0.92484 0.93704 1.22380 0.95160 0.99900 1.02161 1.23198 0.92949 0.95959 0.94428 1.67430 1.42640 0.98994 1.13700 1.20952 0.91731 0.92936 0.95956 1.20609 0.97751 0.94174 0.98630 1.21151 0.93096 0.85366 0.98165 1.45100 1.40365 1.21797 1.30072 1.17193 0.86322 0.89738 0.88719 1.20400 1.12592 0.98387 1.02282 1.17906 0.90084 0.92552 0.90224 1.22068 0.99124 1.05285 1.11699 0.86268 1.28828 0.94044 0.96157 1.01362 1.69095 1.04795 1.25607 1.35512 0.84751 0.80543 0.77987 0.74393 1.16636 1.18115 1.18013 1.21256 1.03189 0.92302 1.01549 1.19979 0.94495 0.99975 0.93558 1.19792 1.16807 0.87745 1.03734 1.50100 1.00599 1.02353 1.00800 1.96083 1.41860 1.48068 1.64248 1.95967 0.99095 1.81743 1.71045 1.22103 0.93980 1.00375 1.03180 0.89584 0.90364 0.89419 0.81848 0.80795 0.88437 0.89961 0.92011 0.92474 0.76473 0.85444 0.86585 0.84349 0.87008 0.83394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.09 10.06 71.23 0.72 -0.37 16 2 C -0.05 -0.75 5.92 -19.67 -0.12 -0.87 16 3 C -0.18 -2.77 9.82 22.36 0.22 -2.55 16 4 C 0.09 1.85 11.18 84.67 0.95 2.80 16 5 N -0.52 -13.96 9.88 -183.88 -1.82 -15.78 16 6 C 0.12 3.11 6.18 42.55 0.26 3.38 16 7 C -0.07 -2.02 5.73 29.85 0.17 -1.85 16 8 C 0.15 4.91 4.84 86.38 0.42 5.33 16 9 N -0.74 -30.71 5.48 -339.54 -1.86 -32.57 16 10 C 0.29 13.64 6.60 38.18 0.25 13.89 16 11 C -0.31 -13.91 9.08 22.96 0.21 -13.70 16 12 C 0.10 4.43 5.63 -21.29 -0.12 4.31 16 13 C -0.36 -14.40 9.32 24.95 0.23 -14.16 16 14 H 0.12 4.33 7.98 -2.91 -0.02 4.31 16 15 C 0.03 0.96 5.35 87.20 0.47 1.43 16 16 N -0.73 -28.08 10.88 23.21 0.25 -27.83 16 17 Si 1.01 25.81 29.67 68.60 2.04 27.84 16 18 H -0.24 -6.07 7.11 99.48 0.71 -5.36 16 19 H -0.26 -6.37 7.11 99.48 0.71 -5.66 16 20 H -0.26 -6.39 7.11 99.48 0.71 -5.68 16 21 C -0.16 -7.54 8.74 22.62 0.20 -7.34 16 22 C -0.06 -2.96 9.60 21.96 0.21 -2.75 16 23 C -0.17 -9.07 6.59 36.78 0.24 -8.83 16 24 N 0.05 2.52 4.75 -45.51 -0.22 2.30 16 25 O -0.35 -20.67 19.69 3.51 0.07 -20.60 16 26 O -0.33 -17.65 17.48 3.51 0.06 -17.59 16 27 C -0.18 -3.61 9.42 22.36 0.21 -3.40 16 28 H 0.09 0.71 8.14 -2.39 -0.02 0.70 16 29 H 0.08 0.67 8.10 -2.39 -0.02 0.65 16 30 H 0.09 0.56 8.10 -2.39 -0.02 0.54 16 31 H 0.16 1.45 8.06 -2.91 -0.02 1.42 16 32 H 0.18 2.59 8.06 -2.91 -0.02 2.56 16 33 H 0.10 2.42 7.87 -2.39 -0.02 2.40 16 34 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 35 H 0.06 2.19 7.48 -2.39 -0.02 2.17 16 36 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 37 H 0.40 17.14 6.04 -92.70 -0.56 16.58 16 38 H 0.13 5.26 6.71 -2.91 -0.02 5.24 16 39 H 0.32 10.40 8.27 -92.71 -0.77 9.63 16 40 H 0.14 6.23 5.98 -2.91 -0.02 6.21 16 41 H 0.11 5.38 8.02 -2.91 -0.02 5.36 16 42 H 0.15 2.48 7.95 -2.91 -0.02 2.46 16 Total: -1.00 -64.79 366.26 3.55 -61.23 By element: Atomic # 1 Polarization: 47.20 SS G_CDS: 0.51 Total: 47.70 kcal Atomic # 6 Polarization: -29.23 SS G_CDS: 4.52 Total: -24.71 kcal Atomic # 7 Polarization: -70.23 SS G_CDS: -3.64 Total: -73.87 kcal Atomic # 8 Polarization: -38.33 SS G_CDS: 0.13 Total: -38.20 kcal Atomic # 14 Polarization: 25.81 SS G_CDS: 2.04 Total: 27.84 kcal Total: -64.79 3.55 -61.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169320716.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.482 kcal (2) G-P(sol) polarization free energy of solvation -64.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds