Wall clock time and date at job start Tue Mar 31 2020 14:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 C 1.35675 * 116.99985 * 2 1 4 4 C 1.38017 * 120.21258 * 359.97438 * 3 2 1 5 5 C 1.39239 * 119.98232 * 179.97438 * 4 3 2 6 6 N 1.38972 * 119.79963 * 179.97438 * 5 4 3 7 7 C 1.38548 * 119.99921 * 146.85825 * 6 5 4 8 8 N 1.30047 * 119.99942 * 354.44213 * 7 6 5 9 9 O 1.41598 * 119.99908 * 188.36615 * 8 7 6 10 10 C 1.48124 * 120.00336 * 174.71758 * 7 6 5 11 11 C 1.39373 * 119.73367 * 199.80206 * 10 7 6 12 12 C 1.38448 * 119.06178 * 179.97438 * 11 10 7 13 13 C 1.38732 * 118.50990 * 0.02562 * 12 11 10 14 14 C 1.50703 * 120.31795 * 180.02562 * 13 12 11 15 15 C 1.38360 * 119.36994 * 359.97438 * 13 12 11 16 16 N 1.31669 * 120.90277 * 359.72165 * 15 13 12 17 17 C 1.39729 * 120.39765 * 0.28000 * 5 4 3 18 18 C 1.36207 * 120.43239 * 359.44139 * 17 5 4 19 19 C 1.40858 * 120.00936 * 0.55376 * 18 17 5 20 20 C 1.40952 * 120.20348 * 179.70348 * 19 18 17 21 21 H 1.08000 * 120.00067 * 146.74235 * 20 19 18 22 22 C 1.39846 * 119.99269 * 326.74556 * 20 19 18 23 23 N 1.30940 * 120.00470 * 358.29775 * 22 20 19 24 24 Si 1.86803 * 119.99642 * 178.30549 * 22 20 19 25 25 H 1.48501 * 109.47501 * 89.99757 * 24 22 20 26 26 H 1.48506 * 109.47093 * 209.99551 * 24 22 20 27 27 H 1.48497 * 109.46998 * 329.99524 * 24 22 20 28 28 H 1.09005 * 109.47462 * 300.00022 * 1 2 3 29 29 H 1.09000 * 109.47211 * 60.00075 * 1 2 3 30 30 H 1.09002 * 109.47431 * 180.02562 * 1 2 3 31 31 H 1.08002 * 120.01065 * 0.02562 * 4 3 2 32 32 H 0.97001 * 119.99968 * 326.86230 * 6 5 4 33 33 H 0.96704 * 113.99535 * 179.97438 * 9 8 7 34 34 H 1.08004 * 120.47268 * 359.97408 * 11 10 7 35 35 H 1.08009 * 120.74784 * 180.02562 * 12 11 10 36 36 H 1.08999 * 109.47203 * 89.99571 * 14 13 12 37 37 H 1.09000 * 109.47112 * 209.99877 * 14 13 12 38 38 H 1.08997 * 109.47362 * 329.99789 * 14 13 12 39 39 H 1.08007 * 119.54970 * 179.97438 * 15 13 12 40 40 H 1.08001 * 119.77951 * 179.70055 * 17 5 4 41 41 H 1.08007 * 119.99568 * 180.28215 * 18 17 5 42 42 H 0.97005 * 120.00619 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0448 1.2089 0.0000 4 6 1.2975 2.3692 -0.0005 5 6 1.9346 3.6072 0.0000 6 7 1.1783 4.7731 -0.0011 7 6 1.6434 5.9012 0.6553 8 7 2.7332 5.8391 1.3622 9 8 3.1140 6.9352 2.1738 10 6 0.8961 7.1763 0.5568 11 6 1.5392 8.3785 0.8462 12 6 0.8277 9.5621 0.7492 13 6 -0.5045 9.5045 0.3663 14 6 -1.3172 10.7680 0.2471 15 6 -1.0797 8.2759 0.0939 16 7 -0.3787 7.1653 0.1881 17 6 3.3297 3.6845 -0.0048 18 6 4.0835 2.5500 0.0014 19 6 3.4574 1.2882 0.0009 20 6 4.2335 0.1116 0.0010 21 1 3.8778 -0.7699 0.5136 22 6 5.4642 0.0858 -0.6627 23 7 5.8801 1.1439 -1.3122 24 14 6.5146 -1.4584 -0.6229 25 1 6.1581 -2.3295 -1.7715 26 1 7.9489 -1.0839 -0.7122 27 1 6.2720 -2.1894 0.6467 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 0.2187 2.3168 -0.0005 32 1 0.3247 4.7972 -0.4613 33 1 3.9372 6.7959 2.6617 34 1 2.5779 8.3866 1.1420 35 1 1.2991 10.5093 0.9668 36 1 -1.2337 11.1594 -0.7668 37 1 -2.3622 10.5500 0.4675 38 1 -0.9435 11.5084 0.9543 39 1 -2.1167 8.2276 -0.2041 40 1 3.8135 4.6500 -0.0092 41 1 5.1614 2.6179 0.0022 42 1 6.7336 1.1260 -1.7729 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169408273.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:04 Heat of formation + Delta-G solvation = 28.666101 kcal Electronic energy + Delta-G solvation = -26676.408392 eV Core-core repulsion = 22816.276722 eV Total energy + Delta-G solvation = -3860.131670 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.45189 -40.61345 -39.09302 -37.62042 -36.63710 -35.16296 -34.28484 -33.19435 -31.94267 -30.79267 -30.27979 -28.35657 -28.01365 -26.41373 -24.58646 -23.87950 -22.81894 -22.62733 -21.16955 -19.50585 -19.25160 -18.44213 -17.57051 -17.39869 -17.05743 -16.71399 -16.51333 -16.21937 -15.98502 -15.81060 -15.61507 -15.44268 -14.82924 -14.59329 -14.52457 -14.11065 -13.98044 -13.65162 -13.55003 -13.33462 -13.25425 -13.13420 -12.82061 -12.66073 -12.62910 -12.20087 -12.13268 -11.72853 -11.49838 -11.44692 -11.06703 -10.83579 -10.64131 -10.55367 -10.07855 -9.52465 -8.97484 -8.51067 -8.33539 -6.12716 -0.34161 0.26852 0.82069 1.11560 1.41101 1.42673 1.54980 1.59346 1.92850 2.29264 2.61904 2.79130 2.86272 2.92474 3.30179 3.69529 3.86084 3.94244 3.98048 4.03081 4.30439 4.31917 4.47603 4.51204 4.68700 4.72765 4.77060 4.83972 4.86796 4.91142 5.02835 5.17424 5.18603 5.23377 5.30609 5.40917 5.56955 5.64463 5.71889 5.94646 6.04946 6.21936 6.40367 6.59531 6.64077 6.84801 6.88070 7.00985 7.18996 7.29657 8.51111 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.019523 B = 0.002871 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.841387 B = 9750.384527 C =10803.646243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.334 6.334 3 C 0.032 3.968 4 C -0.205 4.205 5 C 0.079 3.921 6 N -0.617 5.617 7 C 0.405 3.595 8 N -0.415 5.415 9 O -0.409 6.409 10 C 0.085 3.915 11 C -0.130 4.130 12 C -0.085 4.085 13 C -0.116 4.116 14 C -0.108 4.108 15 C 0.085 3.915 16 N -0.486 5.486 17 C -0.131 4.131 18 C -0.128 4.128 19 C 0.043 3.957 20 C -0.478 4.478 21 H 0.066 0.934 22 C 0.025 3.975 23 N -0.846 5.846 24 Si 0.984 3.016 25 H -0.267 1.267 26 H -0.267 1.267 27 H -0.262 1.262 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.113 0.887 31 H 0.132 0.868 32 H 0.423 0.577 33 H 0.408 0.592 34 H 0.158 0.842 35 H 0.169 0.831 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.187 0.813 40 H 0.109 0.891 41 H 0.113 0.887 42 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.216 17.083 2.213 21.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.248 6.248 3 C -0.014 4.014 4 C -0.226 4.226 5 C -0.016 4.016 6 N -0.252 5.252 7 C 0.127 3.873 8 N -0.177 5.177 9 O -0.315 6.315 10 C -0.053 4.053 11 C -0.151 4.151 12 C -0.110 4.110 13 C -0.118 4.118 14 C -0.165 4.165 15 C -0.075 4.075 16 N -0.196 5.196 17 C -0.152 4.152 18 C -0.149 4.149 19 C 0.041 3.959 20 C -0.509 4.509 21 H 0.085 0.915 22 C -0.185 4.185 23 N -0.475 5.475 24 Si 0.806 3.194 25 H -0.192 1.192 26 H -0.192 1.192 27 H -0.186 1.186 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.131 0.869 31 H 0.149 0.851 32 H 0.263 0.737 33 H 0.259 0.741 34 H 0.175 0.825 35 H 0.187 0.813 36 H 0.107 0.893 37 H 0.105 0.895 38 H 0.102 0.898 39 H 0.204 0.796 40 H 0.127 0.873 41 H 0.131 0.869 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -11.991 15.867 1.971 19.985 hybrid contribution 0.596 0.478 0.069 0.767 sum -11.395 16.345 2.040 20.029 Atomic orbital electron populations 1.23110 0.78609 1.04316 1.00998 1.85956 1.21496 1.27383 1.89995 1.19140 0.92080 0.83589 1.06580 1.20508 0.98901 0.90618 1.12594 1.17003 0.90099 0.84627 1.09914 1.41036 1.22505 1.06246 1.55426 1.20314 0.90016 0.86069 0.90900 1.77242 1.16267 1.11216 1.12993 1.88174 1.48186 1.34711 1.60440 1.20227 0.91415 0.92074 1.01569 1.22695 1.03058 0.91924 0.97447 1.21882 0.93890 0.98765 0.96511 1.21531 0.95265 0.98124 0.96908 1.20849 0.99557 0.92205 1.03875 1.23228 1.00932 0.86801 0.96538 1.67541 1.06422 1.33488 1.12182 1.20410 0.92294 0.97843 1.04656 1.20749 0.99389 0.90750 1.03994 1.17432 0.88716 0.94541 0.95259 1.19392 1.02801 0.98041 1.30688 0.91538 1.26641 0.98235 1.00775 0.92888 1.69879 1.20468 1.30677 1.26518 0.85171 0.77112 0.77640 0.79496 1.19174 1.19175 1.18590 0.93069 0.92898 0.86916 0.85066 0.73732 0.74112 0.82532 0.81329 0.89347 0.89544 0.89818 0.79584 0.87318 0.86897 0.90750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.80 9.81 113.37 1.11 1.91 16 2 O -0.33 -15.64 9.88 -89.92 -0.89 -16.53 16 3 C 0.03 1.61 6.71 23.02 0.15 1.77 16 4 C -0.20 -9.18 8.94 22.46 0.20 -8.98 16 5 C 0.08 3.56 6.29 38.61 0.24 3.81 16 6 N -0.62 -23.67 5.42 -179.54 -0.97 -24.64 16 7 C 0.40 15.12 7.45 136.32 1.01 16.14 16 8 N -0.41 -16.06 8.92 -50.59 -0.45 -16.51 16 9 O -0.41 -12.35 11.04 -38.78 -0.43 -12.78 16 10 C 0.08 2.65 6.64 41.91 0.28 2.92 16 11 C -0.13 -3.37 8.83 22.59 0.20 -3.17 16 12 C -0.08 -1.54 9.84 22.44 0.22 -1.32 16 13 C -0.12 -1.83 5.90 -19.72 -0.12 -1.94 16 14 C -0.11 -0.79 10.03 71.24 0.71 -0.07 16 15 C 0.08 1.67 10.85 84.75 0.92 2.59 16 16 N -0.49 -13.57 9.75 -184.96 -1.80 -15.37 16 17 C -0.13 -6.54 8.50 22.16 0.19 -6.35 16 18 C -0.13 -7.12 8.57 22.44 0.19 -6.93 16 19 C 0.04 2.48 5.55 -21.17 -0.12 2.36 16 20 C -0.48 -27.52 8.63 23.32 0.20 -27.32 16 21 H 0.07 3.82 7.74 -2.91 -0.02 3.79 16 22 C 0.03 1.35 5.37 85.22 0.46 1.81 16 23 N -0.85 -46.71 10.71 21.81 0.23 -46.48 16 24 Si 0.98 41.31 29.56 68.60 2.03 43.34 16 25 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 26 H -0.27 -10.56 7.11 99.48 0.71 -9.86 16 27 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 28 H 0.05 1.54 7.66 -2.38 -0.02 1.53 16 29 H 0.05 1.59 7.66 -2.39 -0.02 1.57 16 30 H 0.11 2.93 8.14 -2.39 -0.02 2.91 16 31 H 0.13 4.95 6.29 -2.91 -0.02 4.93 16 32 H 0.42 14.32 8.36 -92.71 -0.77 13.54 16 33 H 0.41 9.10 9.28 -74.05 -0.69 8.41 16 34 H 0.16 4.14 5.44 -2.91 -0.02 4.12 16 35 H 0.17 1.88 8.06 -2.91 -0.02 1.86 16 36 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 37 H 0.09 0.43 8.09 -2.39 -0.02 0.41 16 38 H 0.08 0.43 8.09 -2.39 -0.02 0.41 16 39 H 0.19 2.36 8.06 -2.91 -0.02 2.34 16 40 H 0.11 5.30 6.26 -2.91 -0.02 5.28 16 41 H 0.11 6.59 6.22 -2.91 -0.02 6.57 16 42 H 0.28 14.20 8.30 -92.70 -0.77 13.43 16 Total: -1.00 -73.49 356.32 3.22 -70.28 By element: Atomic # 1 Polarization: 41.84 SS G_CDS: -0.36 Total: 41.48 kcal Atomic # 6 Polarization: -28.65 SS G_CDS: 5.86 Total: -22.79 kcal Atomic # 7 Polarization: -100.00 SS G_CDS: -2.99 Total: -103.00 kcal Atomic # 8 Polarization: -27.99 SS G_CDS: -1.32 Total: -29.31 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 2.03 Total: 43.34 kcal Total: -73.49 3.22 -70.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169408273.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.945 kcal (2) G-P(sol) polarization free energy of solvation -73.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds