Wall clock time and date at job start Tue Mar 31 2020 14:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38736 * 120.30987 * 2 1 4 4 C 1.38457 * 118.51067 * 179.75239 * 3 2 1 5 5 C 1.39460 * 119.05319 * 0.53465 * 4 3 2 6 6 C 1.47930 * 119.73669 * 179.73139 * 5 4 3 7 7 N 1.31029 * 120.00191 * 359.72669 * 6 5 4 8 8 C 1.36841 * 120.00184 * 187.75779 * 7 6 5 9 9 C 1.39692 * 120.09739 * 248.46958 * 8 7 6 10 10 C 1.37872 * 119.89636 * 180.29286 * 9 8 7 11 11 C 1.38844 * 120.09626 * 359.45445 * 10 9 8 12 12 O 1.35929 * 119.89393 * 180.24960 * 11 10 9 13 13 C 1.42902 * 116.99937 * 0.29852 * 12 11 10 14 14 C 1.50700 * 109.47042 * 179.97438 * 13 12 11 15 15 H 1.08001 * 120.00091 * 359.97438 * 14 13 12 16 16 C 1.37878 * 120.00328 * 179.97438 * 14 13 12 17 17 N 1.31518 * 119.99787 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00090 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47027 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.46952 * 119.99793 * 18 16 14 21 21 H 1.48500 * 109.46846 * 239.99655 * 18 16 14 22 22 C 1.38842 * 120.20399 * 0.55041 * 11 10 9 23 23 C 1.37865 * 120.10316 * 359.72229 * 22 11 10 24 24 N 1.37855 * 120.00086 * 179.73219 * 6 5 4 25 25 O 1.41595 * 119.99966 * 185.48640 * 24 6 5 26 26 N 1.32789 * 120.52305 * 359.45710 * 5 4 3 27 27 C 1.31617 * 121.61827 * 0.27651 * 26 5 4 28 28 H 1.08999 * 109.46997 * 269.97349 * 1 2 3 29 29 H 1.08999 * 109.47611 * 29.97509 * 1 2 3 30 30 H 1.09000 * 109.47618 * 149.97698 * 1 2 3 31 31 H 1.07998 * 120.73999 * 0.05289 * 3 2 1 32 32 H 1.08010 * 120.47156 * 180.28998 * 4 3 2 33 33 H 1.08001 * 120.05168 * 0.02562 * 9 8 7 34 34 H 1.07999 * 119.94443 * 179.72140 * 10 9 8 35 35 H 1.08994 * 109.47111 * 299.99520 * 13 12 11 36 36 H 1.08996 * 109.47197 * 60.00137 * 13 12 11 37 37 H 0.96995 * 120.00026 * 180.02562 * 17 16 14 38 38 H 1.08007 * 119.94518 * 179.70561 * 22 11 10 39 39 H 1.08000 * 120.04939 * 179.97438 * 23 22 11 40 40 H 0.96999 * 119.99828 * 5.48029 * 24 6 5 41 41 H 0.96703 * 113.99753 * 179.97438 * 25 24 6 42 42 H 1.08001 * 119.54730 * 180.02562 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2071 1.1977 0.0000 4 6 3.5910 1.1543 0.0053 5 6 4.2296 -0.0855 -0.0010 6 6 5.7075 -0.1495 -0.0016 7 7 6.4112 0.9558 -0.0016 8 6 7.7692 0.9024 -0.1620 9 6 8.6136 1.2353 0.8998 10 6 9.9812 1.1859 0.7317 11 6 10.5192 0.7951 -0.4871 12 8 11.8681 0.7430 -0.6467 13 6 12.6691 1.0971 0.4824 14 6 14.1273 0.9805 0.1203 15 1 14.4137 0.6668 -0.8727 16 6 15.0959 1.2742 1.0566 17 7 14.7472 1.6557 2.2660 18 14 16.9033 1.1302 0.6074 19 1 17.0287 0.6848 -0.8036 20 1 17.5606 2.4519 0.7701 21 1 17.5574 0.1390 1.4989 22 6 9.6837 0.4634 -1.5452 23 6 8.3150 0.5152 -1.3881 24 7 6.3445 -1.3721 -0.0022 25 8 7.7542 -1.4360 0.1145 26 7 3.5216 -1.2089 -0.0011 27 6 2.2055 -1.1950 -0.0006 28 1 -0.3633 -0.0005 1.0277 29 1 -0.3634 0.8902 -0.5134 30 1 -0.3634 -0.8897 -0.5142 31 1 1.6843 2.1427 0.0009 32 1 4.1676 2.0675 0.0101 33 1 8.1959 1.5351 1.8496 34 1 10.6348 1.4475 1.5507 35 1 12.4485 2.1231 0.7769 36 1 12.4461 0.4253 1.3112 37 1 15.4285 1.8626 2.9245 38 1 10.1067 0.1645 -2.4930 39 1 7.6659 0.2574 -2.2119 40 1 5.8270 -2.1885 -0.0825 41 1 8.1093 -2.3354 0.1049 42 1 1.6631 -2.1290 -0.0003 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169411917.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:04 Heat of formation + Delta-G solvation = 57.926597 kcal Electronic energy + Delta-G solvation = -26018.241807 eV Core-core repulsion = 22159.378967 eV Total energy + Delta-G solvation = -3858.862840 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.74710 -39.43117 -38.09896 -36.28458 -35.15536 -33.87195 -32.84914 -32.23457 -31.03454 -30.41799 -28.39811 -27.82378 -26.77547 -24.14951 -23.43082 -23.14688 -21.77310 -21.38081 -19.85211 -19.16554 -17.64524 -17.16149 -16.85424 -16.42036 -15.98591 -15.44752 -15.23527 -14.86361 -14.46098 -14.44548 -14.16412 -13.95765 -13.74772 -13.69352 -13.52230 -13.20238 -12.98864 -12.89093 -12.80740 -12.41727 -12.13205 -11.89852 -11.54932 -11.21974 -11.04477 -10.90428 -10.56138 -10.38701 -10.22117 -10.07037 -10.01514 -9.45786 -9.19734 -9.16489 -8.53226 -8.35330 -8.09508 -6.85561 -6.19668 -4.22809 0.29737 0.85643 1.87580 1.99759 2.10356 2.55274 3.25830 3.32217 3.38585 3.45408 3.51341 4.24305 4.31793 4.33356 4.41812 4.47557 4.54022 4.68375 4.81427 5.06778 5.13400 5.17347 5.18326 5.36934 5.46207 5.49122 5.54702 5.62314 5.66396 5.84402 5.95737 6.13713 6.22750 6.36962 6.65730 6.77070 6.83484 6.93164 7.11326 7.17469 7.24552 7.34767 7.45390 7.73871 7.79971 8.03639 8.38159 8.61567 8.92912 9.42264 10.91716 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.041437 B = 0.002008 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.564886 B =13939.623949 C =14076.180628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.125 4.125 3 C -0.081 4.081 4 C -0.104 4.104 5 C 0.157 3.843 6 C 0.468 3.532 7 N -0.535 5.535 8 C 0.080 3.920 9 C -0.078 4.078 10 C -0.198 4.198 11 C 0.139 3.861 12 O -0.321 6.321 13 C 0.194 3.806 14 C -0.521 4.521 15 H 0.070 0.930 16 C 0.059 3.941 17 N -0.895 5.895 18 Si 0.912 3.088 19 H -0.269 1.269 20 H -0.281 1.281 21 H -0.281 1.281 22 C -0.158 4.158 23 C -0.081 4.081 24 N -0.609 5.609 25 O -0.297 6.297 26 N -0.472 5.472 27 C 0.101 3.899 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.142 0.858 32 H 0.156 0.844 33 H 0.112 0.888 34 H 0.130 0.870 35 H 0.020 0.980 36 H 0.020 0.980 37 H 0.266 0.734 38 H 0.120 0.880 39 H 0.108 0.892 40 H 0.410 0.590 41 H 0.374 0.626 42 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.354 -5.941 -3.854 31.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.128 4.128 3 C -0.107 4.107 4 C -0.125 4.125 5 C 0.020 3.980 6 C 0.197 3.803 7 N -0.262 5.262 8 C -0.019 4.019 9 C -0.098 4.098 10 C -0.218 4.218 11 C 0.091 3.909 12 O -0.234 6.234 13 C 0.121 3.879 14 C -0.559 4.559 15 H 0.088 0.912 16 C -0.143 4.143 17 N -0.533 5.533 18 Si 0.739 3.261 19 H -0.194 1.194 20 H -0.207 1.207 21 H -0.207 1.207 22 C -0.177 4.177 23 C -0.101 4.101 24 N -0.292 5.292 25 O -0.192 6.192 26 N -0.181 5.181 27 C -0.058 4.058 28 H 0.095 0.905 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.160 0.840 32 H 0.174 0.826 33 H 0.130 0.870 34 H 0.148 0.852 35 H 0.038 0.962 36 H 0.037 0.963 37 H 0.075 0.925 38 H 0.138 0.862 39 H 0.126 0.874 40 H 0.250 0.750 41 H 0.220 0.780 42 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -29.625 -5.147 -3.727 30.299 hybrid contribution 1.010 -0.857 0.137 1.332 sum -28.616 -6.005 -3.590 29.459 Atomic orbital electron populations 1.20768 0.89860 1.03445 1.02907 1.21128 0.97889 0.94220 0.99541 1.21557 0.93642 0.98556 0.96930 1.22186 0.94670 0.99158 0.96511 1.18880 0.89214 0.89728 1.00153 1.20433 0.88665 0.79878 0.91326 1.68745 1.06894 1.22963 1.27597 1.17922 0.87212 1.02686 0.94041 1.20728 0.92184 0.99816 0.97061 1.21236 0.95514 1.06908 0.98112 1.19207 0.84710 0.93852 0.93094 1.86094 1.12534 1.82186 1.42593 1.20586 0.89176 0.95381 0.82775 1.21038 0.88895 1.46578 0.99434 0.91166 1.24945 0.99964 0.94797 0.94615 1.69967 1.34126 1.45301 1.03936 0.86207 0.83289 0.77831 0.78759 1.19377 1.20694 1.20729 1.20120 0.91980 1.07383 0.98218 1.20813 0.93891 0.99332 0.96105 1.46099 0.95183 1.07540 1.80424 1.89655 1.00521 1.30528 1.98479 1.67423 1.08899 1.30271 1.11550 1.22563 0.88855 0.97805 0.96612 0.90535 0.91012 0.90935 0.84013 0.82616 0.86987 0.85203 0.96218 0.96261 0.92462 0.86193 0.87393 0.74994 0.78033 0.82194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.33 10.03 36.00 0.36 0.03 16 2 C -0.13 -0.73 5.90 -104.37 -0.62 -1.35 16 3 C -0.08 -0.54 9.84 -39.32 -0.39 -0.92 16 4 C -0.10 -0.96 9.62 -39.05 -0.38 -1.33 16 5 C 0.16 1.71 6.75 -83.03 -0.56 1.15 16 6 C 0.47 6.22 7.62 -153.65 -1.17 5.05 16 7 N -0.54 -8.43 9.48 -8.46 -0.08 -8.51 16 8 C 0.08 1.42 3.82 -84.55 -0.32 1.09 16 9 C -0.08 -1.47 9.69 -39.17 -0.38 -1.85 16 10 C -0.20 -4.17 9.02 -39.49 -0.36 -4.52 16 11 C 0.14 3.06 6.69 -39.13 -0.26 2.80 16 12 O -0.32 -8.20 10.12 -19.52 -0.20 -8.39 16 13 C 0.19 5.37 4.49 36.01 0.16 5.53 16 14 C -0.52 -15.34 9.43 -34.44 -0.32 -15.66 16 15 H 0.07 2.04 7.81 -52.49 -0.41 1.63 16 16 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 17 N -0.89 -26.57 13.29 55.43 0.74 -25.83 16 18 Si 0.91 21.74 29.54 -169.99 -5.02 16.72 16 19 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 C -0.16 -2.99 9.97 -39.49 -0.39 -3.38 16 23 C -0.08 -1.39 7.87 -39.18 -0.31 -1.70 16 24 N -0.61 -7.18 6.98 32.59 0.23 -6.95 16 25 O -0.30 -3.89 10.14 -11.47 -0.12 -4.00 16 26 N -0.47 -4.48 9.60 -9.83 -0.09 -4.57 16 27 C 0.10 0.70 10.85 -17.57 -0.19 0.51 16 28 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.07 0.17 8.09 -51.93 -0.42 -0.26 16 30 H 0.07 0.14 8.09 -51.93 -0.42 -0.28 16 31 H 0.14 0.58 8.06 -52.49 -0.42 0.15 16 32 H 0.16 1.48 7.54 -52.48 -0.40 1.08 16 33 H 0.11 2.00 8.06 -52.49 -0.42 1.57 16 34 H 0.13 2.86 6.28 -52.49 -0.33 2.53 16 35 H 0.02 0.57 7.64 -51.93 -0.40 0.18 16 36 H 0.02 0.56 7.67 -51.93 -0.40 0.16 16 37 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 38 H 0.12 2.12 8.06 -52.48 -0.42 1.69 16 39 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 40 H 0.41 3.80 8.24 -40.82 -0.34 3.46 16 41 H 0.37 3.21 9.28 45.56 0.42 3.63 16 42 H 0.16 0.65 8.06 -52.49 -0.42 0.22 16 LS Contribution 364.91 15.07 5.50 5.50 Total: -1.00 -34.77 364.91 -8.62 -43.40 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -4.36 Total: 5.62 kcal Atomic # 6 Polarization: -7.74 SS G_CDS: -5.22 Total: -12.96 kcal Atomic # 7 Polarization: -46.65 SS G_CDS: 0.79 Total: -45.86 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: -0.31 Total: -12.40 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.77 -8.62 -43.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169411917.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.324 kcal (2) G-P(sol) polarization free energy of solvation -34.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds