Wall clock time and date at job start Tue Mar 31 2020 14:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38736 * 120.30987 * 2 1 4 4 C 1.38457 * 118.51067 * 179.75239 * 3 2 1 5 5 C 1.39460 * 119.05319 * 0.53465 * 4 3 2 6 6 C 1.47930 * 119.73669 * 179.73139 * 5 4 3 7 7 N 1.31029 * 120.00191 * 359.72669 * 6 5 4 8 8 C 1.36841 * 120.00184 * 187.75779 * 7 6 5 9 9 C 1.39692 * 120.09739 * 248.46958 * 8 7 6 10 10 C 1.37872 * 119.89636 * 180.29286 * 9 8 7 11 11 C 1.38844 * 120.09626 * 359.45445 * 10 9 8 12 12 O 1.35929 * 119.89393 * 180.24960 * 11 10 9 13 13 C 1.42902 * 116.99937 * 0.29852 * 12 11 10 14 14 C 1.50700 * 109.47042 * 179.97438 * 13 12 11 15 15 H 1.08001 * 120.00091 * 359.97438 * 14 13 12 16 16 C 1.37878 * 120.00328 * 179.97438 * 14 13 12 17 17 N 1.31518 * 119.99787 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00090 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47027 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.46952 * 119.99793 * 18 16 14 21 21 H 1.48500 * 109.46846 * 239.99655 * 18 16 14 22 22 C 1.38842 * 120.20399 * 0.55041 * 11 10 9 23 23 C 1.37865 * 120.10316 * 359.72229 * 22 11 10 24 24 N 1.37855 * 120.00086 * 179.73219 * 6 5 4 25 25 O 1.41595 * 119.99966 * 185.48640 * 24 6 5 26 26 N 1.32789 * 120.52305 * 359.45710 * 5 4 3 27 27 C 1.31617 * 121.61827 * 0.27651 * 26 5 4 28 28 H 1.08999 * 109.46997 * 269.97349 * 1 2 3 29 29 H 1.08999 * 109.47611 * 29.97509 * 1 2 3 30 30 H 1.09000 * 109.47618 * 149.97698 * 1 2 3 31 31 H 1.07998 * 120.73999 * 0.05289 * 3 2 1 32 32 H 1.08010 * 120.47156 * 180.28998 * 4 3 2 33 33 H 1.08001 * 120.05168 * 0.02562 * 9 8 7 34 34 H 1.07999 * 119.94443 * 179.72140 * 10 9 8 35 35 H 1.08994 * 109.47111 * 299.99520 * 13 12 11 36 36 H 1.08996 * 109.47197 * 60.00137 * 13 12 11 37 37 H 0.96995 * 120.00026 * 180.02562 * 17 16 14 38 38 H 1.08007 * 119.94518 * 179.70561 * 22 11 10 39 39 H 1.08000 * 120.04939 * 179.97438 * 23 22 11 40 40 H 0.96999 * 119.99828 * 5.48029 * 24 6 5 41 41 H 0.96703 * 113.99753 * 179.97438 * 25 24 6 42 42 H 1.08001 * 119.54730 * 180.02562 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2071 1.1977 0.0000 4 6 3.5910 1.1543 0.0053 5 6 4.2296 -0.0855 -0.0010 6 6 5.7075 -0.1495 -0.0016 7 7 6.4112 0.9558 -0.0016 8 6 7.7692 0.9024 -0.1620 9 6 8.6136 1.2353 0.8998 10 6 9.9812 1.1859 0.7317 11 6 10.5192 0.7951 -0.4871 12 8 11.8681 0.7430 -0.6467 13 6 12.6691 1.0971 0.4824 14 6 14.1273 0.9805 0.1203 15 1 14.4137 0.6668 -0.8727 16 6 15.0959 1.2742 1.0566 17 7 14.7472 1.6557 2.2660 18 14 16.9033 1.1302 0.6074 19 1 17.0287 0.6848 -0.8036 20 1 17.5606 2.4519 0.7701 21 1 17.5574 0.1390 1.4989 22 6 9.6837 0.4634 -1.5452 23 6 8.3150 0.5152 -1.3881 24 7 6.3445 -1.3721 -0.0022 25 8 7.7542 -1.4360 0.1145 26 7 3.5216 -1.2089 -0.0011 27 6 2.2055 -1.1950 -0.0006 28 1 -0.3633 -0.0005 1.0277 29 1 -0.3634 0.8902 -0.5134 30 1 -0.3634 -0.8897 -0.5142 31 1 1.6843 2.1427 0.0009 32 1 4.1676 2.0675 0.0101 33 1 8.1959 1.5351 1.8496 34 1 10.6348 1.4475 1.5507 35 1 12.4485 2.1231 0.7769 36 1 12.4461 0.4253 1.3112 37 1 15.4285 1.8626 2.9245 38 1 10.1067 0.1645 -2.4930 39 1 7.6659 0.2574 -2.2119 40 1 5.8270 -2.1885 -0.0825 41 1 8.1093 -2.3354 0.1049 42 1 1.6631 -2.1290 -0.0003 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169411917.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:03 Heat of formation + Delta-G solvation = 34.310736 kcal Electronic energy + Delta-G solvation = -26019.265867 eV Core-core repulsion = 22159.378967 eV Total energy + Delta-G solvation = -3859.886900 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.44690 -40.89398 -39.48332 -37.72151 -36.21790 -35.07044 -34.51294 -32.94052 -32.17479 -31.93338 -30.08028 -28.96935 -27.98232 -25.47540 -24.76877 -23.93852 -23.25568 -22.66404 -21.02585 -20.16630 -19.18487 -18.56431 -18.41329 -17.55529 -17.06678 -16.81898 -16.41486 -16.33734 -15.98909 -15.65052 -15.35376 -14.88934 -14.84199 -14.74104 -14.55670 -14.29706 -14.09054 -14.05948 -13.73371 -13.57627 -13.32572 -13.19277 -12.96892 -12.82775 -12.54178 -12.50737 -12.27744 -12.11132 -11.76594 -11.30782 -11.09191 -10.79584 -10.68390 -10.58982 -9.90451 -9.79398 -9.24505 -8.39699 -8.38800 -6.54312 -0.41273 0.29203 0.47185 0.51328 1.09943 1.38217 1.40353 1.50434 1.55183 2.27942 2.57512 2.80939 2.82725 2.93507 2.96202 3.74293 3.90257 3.97015 3.98181 4.00191 4.02648 4.13104 4.32168 4.39987 4.41143 4.59206 4.75362 4.79797 4.86062 4.90719 4.93054 4.97593 5.09331 5.15416 5.23946 5.32695 5.38840 5.45180 5.58089 5.61005 5.70250 5.84942 5.88650 5.89663 6.51357 6.73950 6.82830 6.88465 7.18225 7.28028 8.73091 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.041437 B = 0.002008 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.564886 B =13939.623949 C =14076.180628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.109 4.109 3 C -0.083 4.083 4 C -0.109 4.109 5 C 0.124 3.876 6 C 0.484 3.516 7 N -0.573 5.573 8 C 0.110 3.890 9 C -0.092 4.092 10 C -0.202 4.202 11 C 0.095 3.905 12 O -0.338 6.338 13 C 0.214 3.786 14 C -0.556 4.556 15 H 0.067 0.933 16 C 0.009 3.991 17 N -0.927 5.927 18 Si 0.991 3.009 19 H -0.262 1.262 20 H -0.270 1.270 21 H -0.269 1.269 22 C -0.143 4.143 23 C -0.077 4.077 24 N -0.597 5.597 25 O -0.322 6.322 26 N -0.482 5.482 27 C 0.094 3.906 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.169 0.831 32 H 0.146 0.854 33 H 0.117 0.883 34 H 0.106 0.894 35 H -0.004 1.004 36 H -0.002 1.002 37 H 0.274 0.726 38 H 0.134 0.866 39 H 0.130 0.870 40 H 0.424 0.576 41 H 0.395 0.605 42 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.166 -6.998 -4.829 34.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.112 4.112 3 C -0.108 4.108 4 C -0.132 4.132 5 C -0.012 4.012 6 C 0.213 3.787 7 N -0.301 5.301 8 C 0.010 3.990 9 C -0.112 4.112 10 C -0.222 4.222 11 C 0.048 3.952 12 O -0.253 6.253 13 C 0.140 3.860 14 C -0.593 4.593 15 H 0.085 0.915 16 C -0.190 4.190 17 N -0.566 5.566 18 Si 0.813 3.187 19 H -0.186 1.186 20 H -0.195 1.195 21 H -0.194 1.194 22 C -0.162 4.162 23 C -0.097 4.097 24 N -0.279 5.279 25 O -0.220 6.220 26 N -0.192 5.192 27 C -0.066 4.066 28 H 0.106 0.894 29 H 0.101 0.899 30 H 0.106 0.894 31 H 0.186 0.814 32 H 0.164 0.836 33 H 0.135 0.865 34 H 0.124 0.876 35 H 0.014 0.986 36 H 0.016 0.984 37 H 0.082 0.918 38 H 0.152 0.848 39 H 0.148 0.852 40 H 0.267 0.733 41 H 0.244 0.756 42 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -32.481 -6.256 -4.704 33.411 hybrid contribution 1.413 -0.632 0.471 1.618 sum -31.068 -6.888 -4.233 32.103 Atomic orbital electron populations 1.20874 0.87309 1.04792 1.03938 1.21529 0.99602 0.93434 0.96604 1.21895 0.92565 1.00259 0.96076 1.22226 0.95962 0.98250 0.96720 1.18726 0.87928 0.90923 1.03615 1.20800 0.89846 0.79549 0.88471 1.68640 1.05354 1.24087 1.32065 1.18041 0.88312 0.99350 0.93253 1.20787 0.91366 1.00979 0.98070 1.21080 0.96260 1.07514 0.97305 1.19482 0.83487 0.97444 0.94742 1.86016 1.14412 1.83407 1.41437 1.20115 0.89438 0.93390 0.83044 1.21364 0.90011 1.48088 0.99824 0.91457 1.26025 1.05300 0.93527 0.94195 1.70081 1.36225 1.45260 1.05029 0.85020 0.76347 0.78458 0.78868 1.18624 1.19489 1.19394 1.20278 0.92322 1.05929 0.97681 1.20987 0.93198 0.98881 0.96668 1.46089 0.94888 1.07941 1.79018 1.89569 1.01206 1.32829 1.98413 1.67373 1.10224 1.29750 1.11877 1.23164 0.88079 0.99609 0.95756 0.89422 0.89927 0.89447 0.81367 0.83583 0.86480 0.87615 0.98620 0.98394 0.91751 0.84843 0.85223 0.73339 0.75642 0.79268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.17 10.03 71.23 0.71 0.54 16 2 C -0.11 -0.89 5.90 -19.70 -0.12 -1.01 16 3 C -0.08 -0.87 9.84 22.44 0.22 -0.65 16 4 C -0.11 -1.89 9.62 22.62 0.22 -1.67 16 5 C 0.12 2.55 6.75 41.86 0.28 2.83 16 6 C 0.48 12.49 7.62 136.21 1.04 13.53 16 7 N -0.57 -17.94 9.48 -180.69 -1.71 -19.65 16 8 C 0.11 3.91 3.82 39.06 0.15 4.06 16 9 C -0.09 -3.62 9.69 22.53 0.22 -3.40 16 10 C -0.20 -9.12 9.02 22.33 0.20 -8.92 16 11 C 0.09 4.39 6.69 22.56 0.15 4.54 16 12 O -0.34 -18.37 10.12 -92.75 -0.94 -19.30 16 13 C 0.21 12.70 4.49 71.24 0.32 13.02 16 14 C -0.56 -34.02 9.43 25.60 0.24 -33.78 16 15 H 0.07 4.05 7.81 -2.91 -0.02 4.03 16 16 C 0.01 0.51 5.46 84.65 0.46 0.97 16 17 N -0.93 -56.62 13.29 21.45 0.28 -56.33 16 18 Si 0.99 44.90 29.54 68.60 2.03 46.92 16 19 H -0.26 -11.49 7.11 99.48 0.71 -10.79 16 20 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 21 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 22 C -0.14 -5.50 9.97 22.33 0.22 -5.27 16 23 C -0.08 -2.61 7.87 22.53 0.18 -2.43 16 24 N -0.60 -13.40 6.98 -50.82 -0.35 -13.76 16 25 O -0.32 -8.26 10.14 -38.77 -0.39 -8.65 16 26 N -0.48 -8.16 9.60 -185.01 -1.78 -9.94 16 27 C 0.09 1.00 10.85 84.77 0.92 1.92 16 28 H 0.09 0.04 8.14 -2.39 -0.02 0.02 16 29 H 0.08 0.01 8.09 -2.39 -0.02 0.00 16 30 H 0.09 -0.06 8.09 -2.39 -0.02 -0.08 16 31 H 0.17 0.80 8.06 -2.91 -0.02 0.78 16 32 H 0.15 2.75 7.54 -2.91 -0.02 2.72 16 33 H 0.12 4.39 8.06 -2.91 -0.02 4.37 16 34 H 0.11 5.18 6.28 -2.91 -0.02 5.16 16 35 H 0.00 -0.25 7.64 -2.39 -0.02 -0.27 16 36 H 0.00 -0.11 7.67 -2.39 -0.02 -0.12 16 37 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 38 H 0.13 4.69 8.06 -2.91 -0.02 4.66 16 39 H 0.13 3.87 8.06 -2.91 -0.02 3.84 16 40 H 0.42 7.21 8.24 -92.71 -0.76 6.45 16 41 H 0.39 6.49 9.28 -74.05 -0.69 5.80 16 42 H 0.19 0.77 8.06 -2.91 -0.02 0.74 16 Total: -1.00 -78.58 364.91 2.18 -76.40 By element: Atomic # 1 Polarization: 20.40 SS G_CDS: -0.38 Total: 20.02 kcal Atomic # 6 Polarization: -21.13 SS G_CDS: 5.42 Total: -15.71 kcal Atomic # 7 Polarization: -96.12 SS G_CDS: -3.56 Total: -99.68 kcal Atomic # 8 Polarization: -26.62 SS G_CDS: -1.33 Total: -27.96 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.92 kcal Total: -78.58 2.18 -76.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169411917.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.710 kcal (2) G-P(sol) polarization free energy of solvation -78.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds