Wall clock time and date at job start Tue Mar 31 2020 14:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38378 * 120.82326 * 2 1 4 4 C 1.38323 * 119.45821 * 180.27609 * 3 2 1 5 5 N 1.31907 * 121.18299 * 359.72094 * 4 3 2 6 6 C 1.32214 * 121.80381 * 0.02562 * 5 4 3 7 7 O 1.35426 * 119.79965 * 180.02562 * 6 5 4 8 8 C 1.39946 * 120.82703 * 179.73400 * 2 1 3 9 9 C 1.47530 * 120.59402 * 359.97438 * 8 2 1 10 10 O 1.21588 * 120.00485 * 269.72591 * 9 8 2 11 11 N 1.34784 * 119.99631 * 89.72865 * 9 8 2 12 12 C 1.46493 * 119.99864 * 359.72518 * 11 9 8 13 13 C 1.50702 * 109.47427 * 89.99800 * 12 11 9 14 14 H 1.07999 * 119.99972 * 0.02562 * 13 12 11 15 15 C 1.37875 * 119.99945 * 179.97438 * 13 12 11 16 16 N 1.31519 * 120.00264 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 119.99887 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.46962 * 59.99982 * 17 15 13 19 19 H 1.48504 * 109.46839 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47142 * 300.00289 * 17 15 13 21 21 C 1.46494 * 119.99635 * 179.97438 * 11 9 8 22 22 C 1.50694 * 109.47248 * 90.00174 * 21 11 9 23 23 C 1.38674 * 120.42107 * 269.71670 * 22 21 11 24 24 C 1.38621 * 118.42307 * 179.78218 * 23 22 21 25 25 C 1.38229 * 119.16202 * 0.51421 * 24 23 22 26 26 N 1.31856 * 120.76186 * 359.72723 * 25 24 23 27 27 C 1.31880 * 121.72243 * 359.97438 * 26 25 24 28 28 H 1.08998 * 109.46933 * 270.27211 * 1 2 3 29 29 H 1.09000 * 109.47023 * 30.26947 * 1 2 3 30 30 H 1.08997 * 109.46964 * 150.26693 * 1 2 3 31 31 H 1.07999 * 120.27696 * 0.02562 * 3 2 1 32 32 H 1.07995 * 119.40540 * 179.70257 * 4 3 2 33 33 H 0.96691 * 114.00317 * 269.97722 * 7 6 5 34 34 H 1.09002 * 109.47192 * 209.99937 * 12 11 9 35 35 H 1.08996 * 109.47342 * 329.99648 * 12 11 9 36 36 H 0.96991 * 120.00123 * 179.97438 * 16 15 13 37 37 H 1.09003 * 109.47006 * 210.00121 * 21 11 9 38 38 H 1.09004 * 109.47665 * 329.99813 * 21 11 9 39 39 H 1.08004 * 120.78252 * 0.02602 * 23 22 21 40 40 H 1.08000 * 120.42053 * 180.21954 * 24 23 22 41 41 H 1.07995 * 119.61885 * 179.74944 * 25 24 23 42 42 H 1.08008 * 119.61169 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2161 1.1883 0.0000 4 6 3.5989 1.1554 -0.0058 5 7 4.2548 0.0109 -0.0058 6 6 3.6264 -1.1523 -0.0009 7 8 4.3405 -2.3030 -0.0006 8 6 2.2242 -1.2017 0.0056 9 6 1.5184 -2.4973 0.0122 10 8 1.2324 -3.0285 1.0678 11 7 1.1908 -3.0920 -1.1521 12 6 1.5301 -2.4491 -2.4240 13 6 2.8970 -2.9031 -2.8675 14 1 3.4568 -3.6011 -2.2626 15 6 3.4324 -2.4282 -4.0459 16 7 2.7505 -1.5786 -4.7827 17 14 5.1264 -2.9915 -4.5960 18 1 5.1250 -4.4661 -4.7711 19 1 5.4698 -2.3405 -5.8858 20 1 6.1307 -2.6161 -3.5686 21 6 0.4905 -4.3787 -1.1456 22 6 -0.9975 -4.1408 -1.1392 23 6 -1.6862 -4.0327 0.0596 24 6 -3.0536 -3.8093 0.0172 25 6 -3.6826 -3.7130 -1.2099 26 7 -2.9964 -3.8259 -2.3302 27 6 -1.6940 -4.0328 -2.3277 28 1 -0.3633 0.0049 1.0276 29 1 -0.3633 0.8876 -0.5180 30 1 -0.3633 -0.8923 -0.5097 31 1 1.6941 2.1338 0.0004 32 1 4.1514 2.0833 -0.0107 33 1 4.5445 -2.6395 -0.8838 34 1 0.7932 -2.7247 -3.1784 35 1 1.5308 -1.3668 -2.2952 36 1 3.1274 -1.2442 -5.6115 37 1 0.7639 -4.9457 -2.0355 38 1 0.7723 -4.9414 -0.2555 39 1 -1.1687 -4.1167 1.0039 40 1 -3.6211 -3.7164 0.9314 41 1 -4.7483 -3.5431 -1.2515 42 1 -1.1657 -4.1203 -3.2658 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001190967105.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:40 Heat of formation + Delta-G solvation = -5.034288 kcal Electronic energy + Delta-G solvation = -28616.086283 eV Core-core repulsion = 24754.493254 eV Total energy + Delta-G solvation = -3861.593029 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.57935 -39.94296 -38.48458 -36.67781 -35.33584 -33.67306 -33.08468 -32.20631 -31.41227 -30.02661 -27.86582 -27.65817 -26.16087 -23.90080 -23.45635 -22.85148 -21.97996 -21.69993 -19.09263 -17.99132 -17.12432 -16.99233 -16.65816 -16.41598 -16.03080 -15.88412 -15.28479 -15.12565 -14.71744 -14.28973 -14.12493 -13.62079 -13.47755 -13.24133 -12.94531 -12.77304 -12.66816 -12.56848 -12.42024 -12.27983 -11.88202 -11.76251 -11.64188 -11.27424 -11.22469 -11.10970 -10.85124 -10.39624 -10.01708 -9.75323 -9.58912 -9.30001 -9.17434 -9.05044 -8.80175 -8.70195 -8.44252 -7.96724 -6.33608 -4.44452 1.20304 1.29725 1.45930 1.48770 3.07351 3.14946 3.20998 3.23692 3.60768 3.84070 4.11857 4.20065 4.25134 4.60777 4.85654 4.91926 4.96889 5.00082 5.08479 5.11592 5.20677 5.27217 5.34030 5.52977 5.55380 5.66342 5.72495 5.82147 5.86664 5.99230 6.07911 6.10703 6.20517 6.29236 6.44142 6.49406 6.55669 6.78827 6.87024 7.01985 7.31692 7.56468 7.87309 7.95729 8.07248 8.12949 8.27715 8.57914 8.75305 9.24585 10.72633 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.010320 B = 0.005838 C = 0.004468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2712.498960 B = 4794.830999 C = 6264.672926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.001 3.999 3 C -0.193 4.193 4 C 0.133 3.867 5 N -0.509 5.509 6 C 0.371 3.629 7 O -0.484 6.484 8 C -0.165 4.165 9 C 0.578 3.422 10 O -0.557 6.557 11 N -0.583 5.583 12 C 0.239 3.761 13 C -0.552 4.552 14 H 0.062 0.938 15 C 0.072 3.928 16 N -0.880 5.880 17 Si 0.890 3.110 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.272 1.272 21 C 0.160 3.840 22 C -0.147 4.147 23 C -0.056 4.056 24 C -0.181 4.181 25 C 0.091 3.909 26 N -0.489 5.489 27 C 0.116 3.884 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.138 0.862 32 H 0.158 0.842 33 H 0.411 0.589 34 H 0.038 0.962 35 H 0.037 0.963 36 H 0.268 0.732 37 H 0.095 0.905 38 H 0.086 0.914 39 H 0.138 0.862 40 H 0.130 0.870 41 H 0.150 0.850 42 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.284 1.649 6.631 9.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.007 4.007 3 C -0.213 4.213 4 C -0.024 4.024 5 N -0.228 5.228 6 C 0.192 3.808 7 O -0.295 6.295 8 C -0.171 4.171 9 C 0.365 3.635 10 O -0.437 6.437 11 N -0.312 5.312 12 C 0.119 3.881 13 C -0.591 4.591 14 H 0.080 0.920 15 C -0.133 4.133 16 N -0.517 5.517 17 Si 0.717 3.283 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.197 1.197 21 C 0.036 3.964 22 C -0.150 4.150 23 C -0.083 4.083 24 C -0.201 4.201 25 C -0.067 4.067 26 N -0.197 5.197 27 C -0.041 4.041 28 H 0.096 0.904 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.155 0.845 32 H 0.175 0.825 33 H 0.273 0.727 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.078 0.922 37 H 0.113 0.887 38 H 0.104 0.896 39 H 0.155 0.845 40 H 0.148 0.852 41 H 0.167 0.833 42 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -6.975 1.509 6.733 9.811 hybrid contribution 0.637 -0.287 -0.310 0.765 sum -6.338 1.222 6.423 9.105 Atomic orbital electron populations 1.20842 0.90108 1.03633 1.02763 1.20129 0.96499 0.91259 0.92852 1.21810 0.95494 0.98213 1.05793 1.22486 0.91423 0.95041 0.93443 1.67177 1.41997 0.98260 1.15372 1.18849 0.85446 0.85346 0.91181 1.84554 1.74477 1.35032 1.35443 1.20664 0.94304 0.94705 1.07448 1.17790 0.77916 0.84011 0.83776 1.90689 1.56151 1.65471 1.31339 1.48255 1.54579 1.20539 1.07846 1.19455 0.96316 0.93555 0.78736 1.21364 1.02140 1.28435 1.07129 0.91961 1.24937 0.97863 0.94471 0.96028 1.69894 1.37821 1.29970 1.14030 0.86667 0.83872 0.79221 0.78553 1.19830 1.20940 1.19706 1.20184 0.85599 0.86468 1.04174 1.21416 0.98053 1.01346 0.94178 1.21677 0.93860 0.93942 0.98809 1.22106 0.95536 1.03004 0.99427 1.22707 1.00008 0.95947 0.88000 1.67714 1.08762 1.12132 1.31101 1.22810 0.89674 0.93704 0.97958 0.90378 0.90548 0.91087 0.84457 0.82474 0.72652 0.94359 0.94486 0.92207 0.88723 0.89568 0.84452 0.85228 0.83272 0.82516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.71 9.69 36.01 0.35 -1.36 16 2 C 0.00 0.01 5.50 -103.93 -0.57 -0.56 16 3 C -0.19 -2.85 9.79 -39.50 -0.39 -3.24 16 4 C 0.13 2.09 11.17 -17.49 -0.20 1.90 16 5 N -0.51 -9.91 10.37 -12.98 -0.13 -10.04 16 6 C 0.37 7.72 7.77 -16.61 -0.13 7.59 16 7 O -0.48 -10.11 13.02 -17.97 -0.23 -10.34 16 8 C -0.16 -3.30 3.95 -104.69 -0.41 -3.71 16 9 C 0.58 11.81 5.28 -12.47 -0.07 11.75 16 10 O -0.56 -12.15 16.34 5.29 0.09 -12.07 16 11 N -0.58 -11.34 2.44 -177.68 -0.43 -11.77 16 12 C 0.24 5.25 4.98 -5.20 -0.03 5.22 16 13 C -0.55 -12.98 8.61 -34.44 -0.30 -13.27 16 14 H 0.06 1.44 6.68 -52.49 -0.35 1.09 16 15 C 0.07 1.77 5.46 -17.82 -0.10 1.68 16 16 N -0.88 -22.97 13.29 55.43 0.74 -22.23 16 17 Si 0.89 19.30 29.54 -169.99 -5.02 14.28 16 18 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 19 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 20 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 21 C 0.16 2.69 5.56 -5.20 -0.03 2.66 16 22 C -0.15 -2.29 5.48 -104.48 -0.57 -2.86 16 23 C -0.06 -0.81 9.86 -39.28 -0.39 -1.20 16 24 C -0.18 -2.23 10.11 -39.44 -0.40 -2.63 16 25 C 0.09 1.17 11.18 -17.54 -0.20 0.97 16 26 N -0.49 -7.58 10.36 -13.25 -0.14 -7.72 16 27 C 0.12 1.82 10.86 -17.55 -0.19 1.63 16 28 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.08 0.94 8.10 -51.93 -0.42 0.52 16 30 H 0.07 1.18 7.19 -51.93 -0.37 0.80 16 31 H 0.14 1.51 8.06 -52.49 -0.42 1.08 16 32 H 0.16 1.83 8.06 -52.49 -0.42 1.41 16 33 H 0.41 8.10 7.00 45.56 0.32 8.42 16 34 H 0.04 0.88 8.07 -51.93 -0.42 0.46 16 35 H 0.04 0.89 6.54 -51.93 -0.34 0.55 16 36 H 0.27 6.75 8.31 -40.82 -0.34 6.42 16 37 H 0.09 1.52 8.03 -51.93 -0.42 1.10 16 38 H 0.09 1.44 7.37 -51.93 -0.38 1.06 16 39 H 0.14 2.02 7.71 -52.48 -0.40 1.61 16 40 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 41 H 0.15 1.46 8.06 -52.49 -0.42 1.03 16 42 H 0.16 2.42 8.06 -52.48 -0.42 1.99 16 LS Contribution 365.33 15.07 5.51 5.51 Total: -1.00 -29.94 365.33 -7.70 -37.64 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: -4.46 Total: 12.20 kcal Atomic # 6 Polarization: 8.16 SS G_CDS: -3.61 Total: 4.56 kcal Atomic # 7 Polarization: -51.80 SS G_CDS: 0.03 Total: -51.76 kcal Atomic # 8 Polarization: -22.26 SS G_CDS: -0.15 Total: -22.41 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.02 Total: 14.28 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -29.94 -7.70 -37.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190967105.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.609 kcal (2) G-P(sol) polarization free energy of solvation -29.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds