Wall clock time and date at job start Tue Mar 31 2020 14:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38378 * 120.82326 * 2 1 4 4 C 1.38323 * 119.45821 * 180.27609 * 3 2 1 5 5 N 1.31907 * 121.18299 * 359.72094 * 4 3 2 6 6 C 1.32214 * 121.80381 * 0.02562 * 5 4 3 7 7 O 1.35426 * 119.79965 * 180.02562 * 6 5 4 8 8 C 1.39946 * 120.82703 * 179.73400 * 2 1 3 9 9 C 1.47530 * 120.59402 * 359.97438 * 8 2 1 10 10 O 1.21588 * 120.00485 * 269.72591 * 9 8 2 11 11 N 1.34784 * 119.99631 * 89.72865 * 9 8 2 12 12 C 1.46493 * 119.99864 * 359.72518 * 11 9 8 13 13 C 1.50702 * 109.47427 * 89.99800 * 12 11 9 14 14 H 1.07999 * 119.99972 * 0.02562 * 13 12 11 15 15 C 1.37875 * 119.99945 * 179.97438 * 13 12 11 16 16 N 1.31519 * 120.00264 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 119.99887 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.46962 * 59.99982 * 17 15 13 19 19 H 1.48504 * 109.46839 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47142 * 300.00289 * 17 15 13 21 21 C 1.46494 * 119.99635 * 179.97438 * 11 9 8 22 22 C 1.50694 * 109.47248 * 90.00174 * 21 11 9 23 23 C 1.38674 * 120.42107 * 269.71670 * 22 21 11 24 24 C 1.38621 * 118.42307 * 179.78218 * 23 22 21 25 25 C 1.38229 * 119.16202 * 0.51421 * 24 23 22 26 26 N 1.31856 * 120.76186 * 359.72723 * 25 24 23 27 27 C 1.31880 * 121.72243 * 359.97438 * 26 25 24 28 28 H 1.08998 * 109.46933 * 270.27211 * 1 2 3 29 29 H 1.09000 * 109.47023 * 30.26947 * 1 2 3 30 30 H 1.08997 * 109.46964 * 150.26693 * 1 2 3 31 31 H 1.07999 * 120.27696 * 0.02562 * 3 2 1 32 32 H 1.07995 * 119.40540 * 179.70257 * 4 3 2 33 33 H 0.96691 * 114.00317 * 269.97722 * 7 6 5 34 34 H 1.09002 * 109.47192 * 209.99937 * 12 11 9 35 35 H 1.08996 * 109.47342 * 329.99648 * 12 11 9 36 36 H 0.96991 * 120.00123 * 179.97438 * 16 15 13 37 37 H 1.09003 * 109.47006 * 210.00121 * 21 11 9 38 38 H 1.09004 * 109.47665 * 329.99813 * 21 11 9 39 39 H 1.08004 * 120.78252 * 0.02602 * 23 22 21 40 40 H 1.08000 * 120.42053 * 180.21954 * 24 23 22 41 41 H 1.07995 * 119.61885 * 179.74944 * 25 24 23 42 42 H 1.08008 * 119.61169 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2161 1.1883 0.0000 4 6 3.5989 1.1554 -0.0058 5 7 4.2548 0.0109 -0.0058 6 6 3.6264 -1.1523 -0.0009 7 8 4.3405 -2.3030 -0.0006 8 6 2.2242 -1.2017 0.0056 9 6 1.5184 -2.4973 0.0122 10 8 1.2324 -3.0285 1.0678 11 7 1.1908 -3.0920 -1.1521 12 6 1.5301 -2.4491 -2.4240 13 6 2.8970 -2.9031 -2.8675 14 1 3.4568 -3.6011 -2.2626 15 6 3.4324 -2.4282 -4.0459 16 7 2.7505 -1.5786 -4.7827 17 14 5.1264 -2.9915 -4.5960 18 1 5.1250 -4.4661 -4.7711 19 1 5.4698 -2.3405 -5.8858 20 1 6.1307 -2.6161 -3.5686 21 6 0.4905 -4.3787 -1.1456 22 6 -0.9975 -4.1408 -1.1392 23 6 -1.6862 -4.0327 0.0596 24 6 -3.0536 -3.8093 0.0172 25 6 -3.6826 -3.7130 -1.2099 26 7 -2.9964 -3.8259 -2.3302 27 6 -1.6940 -4.0328 -2.3277 28 1 -0.3633 0.0049 1.0276 29 1 -0.3633 0.8876 -0.5180 30 1 -0.3633 -0.8923 -0.5097 31 1 1.6941 2.1338 0.0004 32 1 4.1514 2.0833 -0.0107 33 1 4.5445 -2.6395 -0.8838 34 1 0.7932 -2.7247 -3.1784 35 1 1.5308 -1.3668 -2.2952 36 1 3.1274 -1.2442 -5.6115 37 1 0.7639 -4.9457 -2.0355 38 1 0.7723 -4.9414 -0.2555 39 1 -1.1687 -4.1167 1.0039 40 1 -3.6211 -3.7164 0.9314 41 1 -4.7483 -3.5431 -1.2515 42 1 -1.1657 -4.1203 -3.2658 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001190967105.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:39 Heat of formation + Delta-G solvation = -25.775409 kcal Electronic energy + Delta-G solvation = -28616.985685 eV Core-core repulsion = 24754.493254 eV Total energy + Delta-G solvation = -3862.492431 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.99506 -41.12425 -39.95838 -38.16608 -36.94432 -35.04051 -34.75301 -33.55493 -32.61011 -31.37809 -29.41491 -29.07544 -27.56251 -25.42826 -24.76963 -24.29384 -23.29338 -22.95967 -20.57995 -19.51357 -18.75867 -18.34052 -18.02580 -17.90541 -17.53826 -17.07952 -16.71978 -16.48447 -16.35431 -15.64318 -15.46578 -14.93522 -14.67940 -14.56947 -14.28217 -14.21204 -13.95782 -13.88891 -13.86410 -13.61546 -13.50457 -13.27672 -12.92019 -12.82327 -12.72320 -12.69551 -12.47136 -12.15933 -11.80220 -11.28499 -10.77511 -10.65983 -10.49535 -10.45819 -10.39352 -9.97225 -9.82997 -9.58431 -8.23909 -6.39040 -0.10138 0.11358 0.16313 0.33141 1.41187 1.42853 1.47403 1.53048 2.17088 2.37064 2.48074 2.87661 2.93873 3.08560 3.48210 3.53873 3.68698 3.77645 3.86112 3.92627 4.08877 4.09808 4.12366 4.29503 4.41489 4.50317 4.56289 4.63993 4.65650 4.72151 4.80247 4.82978 4.86602 5.00817 5.14884 5.19650 5.20743 5.36727 5.52797 5.61343 5.72215 5.77498 6.00901 6.39568 6.44643 6.73622 6.90738 7.01422 7.13451 7.33869 8.81552 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.010320 B = 0.005838 C = 0.004468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2712.498960 B = 4794.830999 C = 6264.672926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.012 4.012 3 C -0.177 4.177 4 C 0.130 3.870 5 N -0.534 5.534 6 C 0.339 3.661 7 O -0.496 6.496 8 C -0.193 4.193 9 C 0.580 3.420 10 O -0.578 6.578 11 N -0.579 5.579 12 C 0.260 3.740 13 C -0.549 4.549 14 H 0.062 0.938 15 C 0.032 3.968 16 N -0.912 5.912 17 Si 0.944 3.056 18 H -0.268 1.268 19 H -0.287 1.287 20 H -0.270 1.270 21 C 0.159 3.841 22 C -0.156 4.156 23 C -0.064 4.064 24 C -0.167 4.167 25 C 0.092 3.908 26 N -0.509 5.509 27 C 0.104 3.896 28 H 0.093 0.907 29 H 0.104 0.896 30 H 0.045 0.955 31 H 0.185 0.815 32 H 0.201 0.799 33 H 0.408 0.592 34 H 0.024 0.976 35 H 0.019 0.981 36 H 0.267 0.733 37 H 0.096 0.904 38 H 0.084 0.916 39 H 0.132 0.868 40 H 0.166 0.834 41 H 0.186 0.814 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.572 3.166 7.428 11.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.020 4.020 3 C -0.197 4.197 4 C -0.027 4.027 5 N -0.253 5.253 6 C 0.161 3.839 7 O -0.307 6.307 8 C -0.200 4.200 9 C 0.368 3.632 10 O -0.459 6.459 11 N -0.308 5.308 12 C 0.140 3.860 13 C -0.587 4.587 14 H 0.080 0.920 15 C -0.170 4.170 16 N -0.550 5.550 17 Si 0.769 3.231 18 H -0.193 1.193 19 H -0.212 1.212 20 H -0.195 1.195 21 C 0.036 3.964 22 C -0.159 4.159 23 C -0.091 4.091 24 C -0.186 4.186 25 C -0.065 4.065 26 N -0.218 5.218 27 C -0.053 4.053 28 H 0.112 0.888 29 H 0.123 0.877 30 H 0.064 0.936 31 H 0.203 0.797 32 H 0.218 0.782 33 H 0.270 0.730 34 H 0.043 0.957 35 H 0.037 0.963 36 H 0.076 0.924 37 H 0.114 0.886 38 H 0.102 0.898 39 H 0.150 0.850 40 H 0.184 0.816 41 H 0.203 0.797 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -8.266 3.004 7.537 11.582 hybrid contribution 0.939 -0.678 -0.489 1.257 sum -7.326 2.326 7.048 10.429 Atomic orbital electron populations 1.20869 0.88455 1.03710 1.03762 1.20599 0.97898 0.91171 0.92321 1.22334 0.95270 0.99184 1.02877 1.23328 0.92497 0.95278 0.91602 1.67192 1.42950 0.98870 1.16321 1.19068 0.85888 0.85640 0.93326 1.84531 1.74824 1.35877 1.35446 1.20799 0.94305 0.95486 1.09394 1.17933 0.77534 0.84266 0.83474 1.90654 1.57242 1.66198 1.31826 1.48173 1.54637 1.21112 1.06862 1.19020 0.95266 0.92468 0.79289 1.21567 1.02625 1.27725 1.06803 0.91979 1.25543 1.00595 0.94598 0.96226 1.69990 1.39194 1.31340 1.14453 0.85818 0.80522 0.78903 0.77844 1.19327 1.21208 1.19463 1.20254 0.86753 0.85353 1.04070 1.21207 0.96987 1.02837 0.94876 1.21745 0.95062 0.94298 0.97973 1.22450 0.94551 1.00827 1.00803 1.23344 1.01516 0.94274 0.87355 1.67727 1.08503 1.12883 1.32694 1.22696 0.90195 0.94731 0.97684 0.88827 0.87729 0.93611 0.79727 0.78208 0.72986 0.95745 0.96345 0.92384 0.88622 0.89756 0.84969 0.81627 0.79669 0.83394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.06 9.69 71.24 0.69 -2.37 16 2 C -0.01 -0.38 5.50 -19.42 -0.11 -0.49 16 3 C -0.18 -4.69 9.79 22.32 0.22 -4.47 16 4 C 0.13 3.75 11.17 84.70 0.95 4.70 16 5 N -0.53 -20.53 10.37 -308.01 -3.19 -23.72 16 6 C 0.34 14.35 7.77 85.14 0.66 15.01 16 7 O -0.50 -21.55 13.02 -87.21 -1.14 -22.68 16 8 C -0.19 -7.82 3.95 -19.91 -0.08 -7.90 16 9 C 0.58 24.33 5.28 86.69 0.46 24.79 16 10 O -0.58 -25.85 16.34 -3.99 -0.07 -25.91 16 11 N -0.58 -23.32 2.44 -834.30 -2.04 -25.36 16 12 C 0.26 11.82 4.98 85.64 0.43 12.24 16 13 C -0.55 -26.43 8.61 25.60 0.22 -26.21 16 14 H 0.06 2.95 6.68 -2.91 -0.02 2.93 16 15 C 0.03 1.60 5.46 84.65 0.46 2.07 16 16 N -0.91 -48.29 13.29 21.45 0.28 -48.00 16 17 Si 0.94 40.01 29.54 68.60 2.03 42.03 16 18 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 19 H -0.29 -12.21 7.11 99.48 0.71 -11.50 16 20 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 21 C 0.16 5.56 5.56 85.63 0.48 6.04 16 22 C -0.16 -4.94 5.48 -19.78 -0.11 -5.05 16 23 C -0.06 -1.81 9.86 22.47 0.22 -1.59 16 24 C -0.17 -3.70 10.11 22.36 0.23 -3.47 16 25 C 0.09 2.15 11.18 84.69 0.95 3.09 16 26 N -0.51 -15.38 10.36 -195.84 -2.03 -17.41 16 27 C 0.10 3.32 10.86 84.67 0.92 4.24 16 28 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 29 H 0.10 2.23 8.10 -2.39 -0.02 2.21 16 30 H 0.04 1.49 7.19 -2.39 -0.02 1.48 16 31 H 0.19 3.06 8.06 -2.91 -0.02 3.03 16 32 H 0.20 3.86 8.06 -2.91 -0.02 3.83 16 33 H 0.41 16.92 7.00 -74.06 -0.52 16.40 16 34 H 0.02 1.18 8.07 -2.39 -0.02 1.16 16 35 H 0.02 0.91 6.54 -2.39 -0.02 0.90 16 36 H 0.27 13.63 8.31 -92.71 -0.77 12.85 16 37 H 0.10 3.25 8.03 -2.39 -0.02 3.23 16 38 H 0.08 2.95 7.37 -2.38 -0.02 2.94 16 39 H 0.13 3.86 7.71 -2.91 -0.02 3.84 16 40 H 0.17 2.46 8.06 -2.91 -0.02 2.43 16 41 H 0.19 2.88 8.06 -2.91 -0.02 2.86 16 42 H 0.15 4.83 8.06 -2.91 -0.02 4.81 16 Total: -1.00 -66.70 365.33 0.98 -65.73 By element: Atomic # 1 Polarization: 34.15 SS G_CDS: 0.54 Total: 34.70 kcal Atomic # 6 Polarization: 14.04 SS G_CDS: 6.58 Total: 20.62 kcal Atomic # 7 Polarization: -107.51 SS G_CDS: -6.97 Total: -114.49 kcal Atomic # 8 Polarization: -47.39 SS G_CDS: -1.20 Total: -48.59 kcal Atomic # 14 Polarization: 40.01 SS G_CDS: 2.03 Total: 42.03 kcal Total: -66.70 0.98 -65.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190967105.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.950 kcal (2) G-P(sol) polarization free energy of solvation -66.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds