Wall clock time and date at job start Tue Mar 31 2020 14:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38782 * 120.40713 * 2 1 4 4 C 1.38337 * 118.55837 * 179.75510 * 3 2 1 5 5 C 1.39288 * 119.30307 * 0.49656 * 4 3 2 6 6 O 1.35668 * 119.61684 * 179.74278 * 5 4 3 7 7 N 1.31896 * 120.76559 * 359.77261 * 5 4 3 8 8 C 1.32852 * 121.56662 * 359.97297 * 7 5 4 9 9 C 1.48146 * 119.69569 * 180.02562 * 8 7 5 10 10 O 1.21516 * 120.00205 * 104.03223 * 9 8 7 11 11 N 1.34777 * 119.99758 * 284.03210 * 9 8 7 12 12 C 1.46502 * 120.00251 * 5.01136 * 11 9 8 13 13 C 1.50700 * 109.47095 * 85.26371 * 12 11 9 14 14 H 1.08002 * 120.00137 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00257 * 179.97438 * 13 12 11 16 16 N 1.31517 * 119.99779 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00195 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47282 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.46711 * 120.00470 * 17 15 13 20 20 H 1.48499 * 109.47109 * 240.00468 * 17 15 13 21 21 C 1.46503 * 120.00221 * 185.01086 * 11 9 8 22 22 C 1.50696 * 109.47212 * 90.00065 * 21 11 9 23 23 C 1.38674 * 120.41666 * 269.72560 * 22 21 11 24 24 C 1.38630 * 118.42196 * 179.78152 * 23 22 21 25 25 C 1.38236 * 119.15657 * 0.51070 * 24 23 22 26 26 N 1.31855 * 120.76258 * 359.72761 * 25 24 23 27 27 C 1.31881 * 121.72759 * 359.97438 * 26 25 24 28 28 H 1.08996 * 109.47404 * 264.59120 * 1 2 3 29 29 H 1.08997 * 109.47032 * 144.58250 * 1 2 3 30 30 H 1.09008 * 109.46956 * 24.58727 * 1 2 3 31 31 H 1.07996 * 120.72330 * 0.02562 * 3 2 1 32 32 H 1.08000 * 120.34430 * 180.24960 * 4 3 2 33 33 H 0.96699 * 114.00397 * 270.03303 * 6 5 4 34 34 H 1.08991 * 109.47528 * 205.26745 * 12 11 9 35 35 H 1.09000 * 109.47234 * 325.27314 * 12 11 9 36 36 H 0.96995 * 120.00017 * 179.97438 * 16 15 13 37 37 H 1.09000 * 109.47291 * 210.00355 * 21 11 9 38 38 H 1.09001 * 109.46495 * 330.00145 * 21 11 9 39 39 H 1.07999 * 120.79226 * 0.02562 * 23 22 21 40 40 H 1.07992 * 120.42375 * 180.21948 * 24 23 22 41 41 H 1.07994 * 119.61760 * 179.74438 * 25 24 23 42 42 H 1.08000 * 119.61688 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2094 1.1969 0.0000 4 6 3.5920 1.1523 0.0052 5 6 4.2342 -0.0837 -0.0003 6 8 5.5900 -0.1348 -0.0005 7 7 3.5396 -1.2049 -0.0058 8 6 2.2111 -1.2000 -0.0059 9 6 1.4725 -2.4842 -0.0116 10 8 0.9483 -2.8882 1.0075 11 7 1.3818 -3.2043 -1.1473 12 6 2.1044 -2.7743 -2.3470 13 6 3.5144 -3.3041 -2.3011 14 1 3.8397 -3.9017 -1.4623 15 6 4.3890 -3.0268 -3.3303 16 7 3.9927 -2.2995 -4.3519 17 14 6.1366 -3.6841 -3.2737 18 1 6.3304 -4.4684 -2.0277 19 1 6.3750 -4.5581 -4.4504 20 1 7.0935 -2.5488 -3.2983 21 6 0.5608 -4.4171 -1.1821 22 6 -0.8443 -4.0609 -1.5940 23 6 -1.7946 -3.7343 -0.6383 24 6 -3.0733 -3.4088 -1.0636 25 6 -3.3593 -3.4310 -2.4159 26 7 -2.4315 -3.7513 -3.2963 27 6 -1.2035 -4.0607 -2.9283 28 1 -0.3634 -0.0969 1.0230 29 1 -0.3633 -0.8375 -0.5955 30 1 -0.3633 0.9346 -0.4276 31 1 1.6880 2.1427 0.0004 32 1 4.1674 2.0663 0.0094 33 1 5.9831 -0.1453 -0.8840 34 1 1.6000 -3.1601 -3.2328 35 1 2.1267 -1.6853 -2.3869 36 1 4.6081 -2.1041 -5.0758 37 1 0.9825 -5.1209 -1.8997 38 1 0.5447 -4.8734 -0.1923 39 1 -1.5435 -3.7296 0.4121 40 1 -3.8375 -3.1459 -0.3473 41 1 -4.3541 -3.1827 -2.7551 42 1 -0.4702 -4.3175 -3.6784 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193184820.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:59 Heat of formation + Delta-G solvation = 0.401572 kcal Electronic energy + Delta-G solvation = -28298.437205 eV Core-core repulsion = 24437.079893 eV Total energy + Delta-G solvation = -3861.357312 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.54607 -39.96174 -38.65864 -36.69942 -35.33995 -33.16022 -32.87888 -32.17231 -31.64247 -31.06233 -27.64038 -27.04609 -25.95669 -24.05151 -23.46794 -22.82366 -22.10081 -21.70781 -19.50275 -18.06846 -17.10396 -16.97380 -16.35339 -16.25856 -15.97731 -15.78290 -15.30136 -15.10207 -14.81642 -14.40852 -13.98199 -13.58251 -13.52515 -13.34285 -12.95085 -12.85960 -12.76294 -12.49517 -12.33856 -12.10120 -11.85129 -11.71840 -11.61633 -11.32368 -11.20692 -10.98155 -10.77975 -10.28089 -9.89018 -9.69591 -9.61591 -9.53164 -9.28484 -8.97029 -8.73197 -8.57413 -8.36961 -7.93058 -6.16114 -4.19450 1.15223 1.24480 1.45349 1.50955 2.95093 3.21416 3.31188 3.39924 3.52284 3.90420 4.10466 4.22204 4.36553 4.60955 4.85448 4.90663 4.99282 5.05187 5.08421 5.17492 5.19051 5.21184 5.25269 5.50902 5.55115 5.66962 5.74192 5.79727 5.83806 5.99153 6.10086 6.12496 6.15730 6.28270 6.36487 6.49286 6.56922 6.70171 6.86984 7.08819 7.36345 7.79248 7.81291 8.05056 8.06396 8.13252 8.27615 8.65738 8.89303 9.45677 10.91411 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.010556 B = 0.005600 C = 0.004176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2651.818298 B = 4999.171324 C = 6704.174059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.122 4.122 3 C -0.068 4.068 4 C -0.178 4.178 5 C 0.311 3.689 6 O -0.485 6.485 7 N -0.436 5.436 8 C 0.144 3.856 9 C 0.584 3.416 10 O -0.556 6.556 11 N -0.577 5.577 12 C 0.242 3.758 13 C -0.512 4.512 14 H 0.065 0.935 15 C 0.063 3.937 16 N -0.897 5.897 17 Si 0.894 3.106 18 H -0.271 1.271 19 H -0.285 1.285 20 H -0.284 1.284 21 C 0.158 3.842 22 C -0.147 4.147 23 C -0.058 4.058 24 C -0.180 4.180 25 C 0.091 3.909 26 N -0.488 5.488 27 C 0.117 3.883 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.139 0.861 32 H 0.138 0.862 33 H 0.402 0.598 34 H 0.039 0.961 35 H 0.030 0.970 36 H 0.262 0.738 37 H 0.096 0.904 38 H 0.088 0.912 39 H 0.138 0.862 40 H 0.130 0.870 41 H 0.150 0.850 42 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.004 4.730 5.005 11.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.125 4.125 3 C -0.093 4.093 4 C -0.200 4.200 5 C 0.130 3.870 6 O -0.292 6.292 7 N -0.154 5.154 8 C 0.003 3.997 9 C 0.369 3.631 10 O -0.435 6.435 11 N -0.305 5.305 12 C 0.122 3.878 13 C -0.551 4.551 14 H 0.083 0.917 15 C -0.139 4.139 16 N -0.536 5.536 17 Si 0.722 3.278 18 H -0.195 1.195 19 H -0.211 1.211 20 H -0.210 1.210 21 C 0.035 3.965 22 C -0.150 4.150 23 C -0.084 4.084 24 C -0.200 4.200 25 C -0.066 4.066 26 N -0.197 5.197 27 C -0.040 4.040 28 H 0.094 0.906 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.157 0.843 32 H 0.156 0.844 33 H 0.260 0.740 34 H 0.057 0.943 35 H 0.048 0.952 36 H 0.072 0.928 37 H 0.114 0.886 38 H 0.107 0.893 39 H 0.155 0.845 40 H 0.148 0.852 41 H 0.167 0.833 42 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -8.965 3.785 5.038 10.958 hybrid contribution 1.176 0.635 0.126 1.343 sum -7.789 4.420 5.163 10.337 Atomic orbital electron populations 1.20687 0.90016 1.02851 1.02746 1.20698 0.97510 0.92775 1.01508 1.21201 0.93292 0.97694 0.97128 1.22149 0.95283 0.98521 1.04005 1.19084 0.84510 0.87563 0.95812 1.84683 1.14438 1.95800 1.34313 1.67200 1.07057 1.31426 1.09760 1.20489 0.88787 0.93312 0.97106 1.17807 0.78949 0.82883 0.83431 1.90687 1.49759 1.70395 1.32700 1.48199 1.45318 1.23903 1.13128 1.19467 0.91591 0.95895 0.80815 1.21430 0.95291 1.32687 1.05643 0.91687 1.24879 0.98701 0.95171 0.95158 1.69950 1.35862 1.38462 1.09361 0.86484 0.84310 0.78920 0.78062 1.19496 1.21115 1.21027 1.20217 0.85335 0.87688 1.03301 1.21419 0.97533 1.01272 0.94823 1.21665 0.92346 0.93871 1.00538 1.22105 0.97636 1.02836 0.97443 1.22716 0.98508 0.95779 0.89618 1.67715 1.01849 1.11212 1.38897 1.22816 0.92873 0.94019 0.94330 0.90561 0.91506 0.91216 0.84311 0.84387 0.73976 0.94306 0.95205 0.92817 0.88614 0.89341 0.84463 0.85178 0.83254 0.82475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.50 9.54 36.00 0.34 -1.15 16 2 C -0.12 -2.07 5.93 -104.09 -0.62 -2.69 16 3 C -0.07 -0.97 9.82 -39.34 -0.39 -1.35 16 4 C -0.18 -2.69 10.05 -39.15 -0.39 -3.08 16 5 C 0.31 5.82 7.74 -17.13 -0.13 5.69 16 6 O -0.48 -8.35 13.56 -18.70 -0.25 -8.60 16 7 N -0.44 -9.50 9.58 -9.87 -0.09 -9.60 16 8 C 0.14 2.95 4.68 -83.02 -0.39 2.56 16 9 C 0.58 12.31 5.80 -12.19 -0.07 12.24 16 10 O -0.56 -12.10 16.56 5.35 0.09 -12.01 16 11 N -0.58 -11.79 2.45 -177.44 -0.43 -12.23 16 12 C 0.24 5.63 4.95 -5.19 -0.03 5.61 16 13 C -0.51 -13.13 8.65 -34.44 -0.30 -13.43 16 14 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 16 N -0.90 -24.24 13.29 55.43 0.74 -23.50 16 17 Si 0.89 20.60 29.54 -169.99 -5.02 15.58 16 18 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 21 C 0.16 2.72 5.58 -5.19 -0.03 2.69 16 22 C -0.15 -2.29 5.48 -104.48 -0.57 -2.87 16 23 C -0.06 -0.81 9.86 -39.28 -0.39 -1.20 16 24 C -0.18 -2.17 10.11 -39.44 -0.40 -2.57 16 25 C 0.09 1.16 11.18 -17.54 -0.20 0.96 16 26 N -0.49 -7.56 10.36 -13.25 -0.14 -7.70 16 27 C 0.12 1.84 10.86 -17.55 -0.19 1.65 16 28 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 29 H 0.07 1.06 7.27 -51.93 -0.38 0.68 16 30 H 0.07 0.79 8.06 -51.92 -0.42 0.37 16 31 H 0.14 1.44 8.06 -52.49 -0.42 1.02 16 32 H 0.14 1.62 8.06 -52.49 -0.42 1.20 16 33 H 0.40 5.59 9.06 45.56 0.41 6.01 16 34 H 0.04 0.93 8.04 -51.93 -0.42 0.51 16 35 H 0.03 0.76 6.97 -51.93 -0.36 0.40 16 36 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 37 H 0.10 1.57 8.02 -51.93 -0.42 1.16 16 38 H 0.09 1.50 7.31 -51.93 -0.38 1.12 16 39 H 0.14 1.93 7.96 -52.49 -0.42 1.51 16 40 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 41 H 0.15 1.43 8.06 -52.49 -0.42 1.01 16 42 H 0.16 2.43 8.06 -52.49 -0.42 2.01 16 LS Contribution 369.60 15.07 5.57 5.57 Total: -1.00 -32.01 369.60 -7.85 -39.85 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -4.46 Total: 8.03 kcal Atomic # 6 Polarization: 8.44 SS G_CDS: -3.84 Total: 4.60 kcal Atomic # 7 Polarization: -53.10 SS G_CDS: 0.07 Total: -53.03 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: -0.16 Total: -20.61 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.01 -7.85 -39.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193184820.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.254 kcal (2) G-P(sol) polarization free energy of solvation -32.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds