Wall clock time and date at job start Tue Mar 31 2020 14:29:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38782 * 120.40713 * 2 1 4 4 C 1.38337 * 118.55837 * 179.75510 * 3 2 1 5 5 C 1.39288 * 119.30307 * 0.49656 * 4 3 2 6 6 O 1.35668 * 119.61684 * 179.74278 * 5 4 3 7 7 N 1.31896 * 120.76559 * 359.77261 * 5 4 3 8 8 C 1.32852 * 121.56662 * 359.97297 * 7 5 4 9 9 C 1.48146 * 119.69569 * 180.02562 * 8 7 5 10 10 O 1.21516 * 120.00205 * 104.03223 * 9 8 7 11 11 N 1.34777 * 119.99758 * 284.03210 * 9 8 7 12 12 C 1.46502 * 120.00251 * 5.01136 * 11 9 8 13 13 C 1.50700 * 109.47095 * 85.26371 * 12 11 9 14 14 H 1.08002 * 120.00137 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00257 * 179.97438 * 13 12 11 16 16 N 1.31517 * 119.99779 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00195 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47282 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.46711 * 120.00470 * 17 15 13 20 20 H 1.48499 * 109.47109 * 240.00468 * 17 15 13 21 21 C 1.46503 * 120.00221 * 185.01086 * 11 9 8 22 22 C 1.50696 * 109.47212 * 90.00065 * 21 11 9 23 23 C 1.38674 * 120.41666 * 269.72560 * 22 21 11 24 24 C 1.38630 * 118.42196 * 179.78152 * 23 22 21 25 25 C 1.38236 * 119.15657 * 0.51070 * 24 23 22 26 26 N 1.31855 * 120.76258 * 359.72761 * 25 24 23 27 27 C 1.31881 * 121.72759 * 359.97438 * 26 25 24 28 28 H 1.08996 * 109.47404 * 264.59120 * 1 2 3 29 29 H 1.08997 * 109.47032 * 144.58250 * 1 2 3 30 30 H 1.09008 * 109.46956 * 24.58727 * 1 2 3 31 31 H 1.07996 * 120.72330 * 0.02562 * 3 2 1 32 32 H 1.08000 * 120.34430 * 180.24960 * 4 3 2 33 33 H 0.96699 * 114.00397 * 270.03303 * 6 5 4 34 34 H 1.08991 * 109.47528 * 205.26745 * 12 11 9 35 35 H 1.09000 * 109.47234 * 325.27314 * 12 11 9 36 36 H 0.96995 * 120.00017 * 179.97438 * 16 15 13 37 37 H 1.09000 * 109.47291 * 210.00355 * 21 11 9 38 38 H 1.09001 * 109.46495 * 330.00145 * 21 11 9 39 39 H 1.07999 * 120.79226 * 0.02562 * 23 22 21 40 40 H 1.07992 * 120.42375 * 180.21948 * 24 23 22 41 41 H 1.07994 * 119.61760 * 179.74438 * 25 24 23 42 42 H 1.08000 * 119.61688 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2094 1.1969 0.0000 4 6 3.5920 1.1523 0.0052 5 6 4.2342 -0.0837 -0.0003 6 8 5.5900 -0.1348 -0.0005 7 7 3.5396 -1.2049 -0.0058 8 6 2.2111 -1.2000 -0.0059 9 6 1.4725 -2.4842 -0.0116 10 8 0.9483 -2.8882 1.0075 11 7 1.3818 -3.2043 -1.1473 12 6 2.1044 -2.7743 -2.3470 13 6 3.5144 -3.3041 -2.3011 14 1 3.8397 -3.9017 -1.4623 15 6 4.3890 -3.0268 -3.3303 16 7 3.9927 -2.2995 -4.3519 17 14 6.1366 -3.6841 -3.2737 18 1 6.3304 -4.4684 -2.0277 19 1 6.3750 -4.5581 -4.4504 20 1 7.0935 -2.5488 -3.2983 21 6 0.5608 -4.4171 -1.1821 22 6 -0.8443 -4.0609 -1.5940 23 6 -1.7946 -3.7343 -0.6383 24 6 -3.0733 -3.4088 -1.0636 25 6 -3.3593 -3.4310 -2.4159 26 7 -2.4315 -3.7513 -3.2963 27 6 -1.2035 -4.0607 -2.9283 28 1 -0.3634 -0.0969 1.0230 29 1 -0.3633 -0.8375 -0.5955 30 1 -0.3633 0.9346 -0.4276 31 1 1.6880 2.1427 0.0004 32 1 4.1674 2.0663 0.0094 33 1 5.9831 -0.1453 -0.8840 34 1 1.6000 -3.1601 -3.2328 35 1 2.1267 -1.6853 -2.3869 36 1 4.6081 -2.1041 -5.0758 37 1 0.9825 -5.1209 -1.8997 38 1 0.5447 -4.8734 -0.1923 39 1 -1.5435 -3.7296 0.4121 40 1 -3.8375 -3.1459 -0.3473 41 1 -4.3541 -3.1827 -2.7551 42 1 -0.4702 -4.3175 -3.6784 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193184820.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:58 Heat of formation + Delta-G solvation = -22.775359 kcal Electronic energy + Delta-G solvation = -28299.442233 eV Core-core repulsion = 24437.079893 eV Total energy + Delta-G solvation = -3862.362339 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.93264 -41.13498 -40.11568 -38.01484 -36.98321 -34.84143 -34.25272 -33.60772 -32.83419 -32.29476 -29.39953 -28.42836 -27.29179 -25.50113 -24.88017 -24.30956 -23.33889 -22.95186 -20.93302 -19.48840 -18.80858 -18.31235 -17.91347 -17.58311 -17.52952 -17.02795 -16.64041 -16.41376 -16.27917 -16.01707 -15.30580 -14.88003 -14.74883 -14.55884 -14.33402 -14.23195 -14.14949 -13.89059 -13.59081 -13.56999 -13.35230 -13.25919 -12.85798 -12.79557 -12.73582 -12.62330 -12.46235 -12.16132 -11.73804 -11.39313 -10.80945 -10.76272 -10.59486 -10.45173 -10.26253 -9.95727 -9.70062 -9.60827 -8.18433 -6.27736 -0.15240 0.12275 0.26096 0.34173 1.35744 1.37920 1.42219 1.53794 2.09299 2.41038 2.58661 2.87361 2.95762 3.12626 3.42825 3.54182 3.73587 3.84309 3.87185 3.89420 4.05761 4.09525 4.10618 4.36218 4.40508 4.50522 4.63659 4.64920 4.70001 4.71600 4.77722 4.87173 4.94394 5.03127 5.11444 5.17061 5.20627 5.36639 5.52673 5.59681 5.76518 5.78630 6.06442 6.35810 6.56441 6.78711 6.92154 7.02514 7.10034 7.40673 8.88319 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.010556 B = 0.005600 C = 0.004176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2651.818298 B = 4999.171324 C = 6704.174059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.126 4.126 3 C -0.057 4.057 4 C -0.163 4.163 5 C 0.283 3.717 6 O -0.493 6.493 7 N -0.486 5.486 8 C 0.103 3.897 9 C 0.581 3.419 10 O -0.572 6.572 11 N -0.578 5.578 12 C 0.267 3.733 13 C -0.514 4.514 14 H 0.043 0.957 15 C 0.027 3.973 16 N -0.921 5.921 17 Si 0.948 3.052 18 H -0.282 1.282 19 H -0.280 1.280 20 H -0.271 1.271 21 C 0.157 3.843 22 C -0.157 4.157 23 C -0.063 4.063 24 C -0.165 4.165 25 C 0.092 3.908 26 N -0.510 5.510 27 C 0.103 3.897 28 H 0.085 0.915 29 H 0.043 0.957 30 H 0.104 0.896 31 H 0.190 0.810 32 H 0.178 0.822 33 H 0.412 0.588 34 H 0.028 0.972 35 H 0.009 0.991 36 H 0.265 0.735 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.135 0.865 40 H 0.169 0.831 41 H 0.187 0.813 42 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.478 6.953 5.377 13.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.129 4.129 3 C -0.082 4.082 4 C -0.184 4.184 5 C 0.102 3.898 6 O -0.302 6.302 7 N -0.206 5.206 8 C -0.037 4.037 9 C 0.367 3.633 10 O -0.453 6.453 11 N -0.307 5.307 12 C 0.146 3.854 13 C -0.553 4.553 14 H 0.061 0.939 15 C -0.173 4.173 16 N -0.561 5.561 17 Si 0.774 3.226 18 H -0.207 1.207 19 H -0.206 1.206 20 H -0.196 1.196 21 C 0.035 3.965 22 C -0.160 4.160 23 C -0.090 4.090 24 C -0.184 4.184 25 C -0.065 4.065 26 N -0.219 5.219 27 C -0.053 4.053 28 H 0.104 0.896 29 H 0.062 0.938 30 H 0.123 0.877 31 H 0.208 0.792 32 H 0.195 0.805 33 H 0.271 0.729 34 H 0.046 0.954 35 H 0.027 0.973 36 H 0.075 0.925 37 H 0.112 0.888 38 H 0.105 0.895 39 H 0.153 0.847 40 H 0.187 0.813 41 H 0.204 0.796 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -10.443 5.995 5.401 13.197 hybrid contribution 1.567 -0.020 0.058 1.568 sum -8.876 5.975 5.459 12.012 Atomic orbital electron populations 1.20724 0.88163 1.03702 1.03177 1.21117 0.98995 0.92516 1.00282 1.21788 0.93044 0.98612 0.94717 1.22549 0.96005 0.98356 1.01450 1.19530 0.84819 0.88358 0.97093 1.84653 1.14290 1.95861 1.35361 1.66991 1.08121 1.33852 1.11611 1.20562 0.88886 0.94123 1.00109 1.18094 0.78728 0.83354 0.83075 1.90642 1.50676 1.71061 1.32912 1.48153 1.45496 1.24736 1.12290 1.18947 0.90686 0.94262 0.81466 1.21432 0.96609 1.32369 1.04867 0.93876 1.25443 1.01663 0.95317 0.94839 1.70021 1.36972 1.39283 1.09832 0.85661 0.80884 0.78605 0.77415 1.20681 1.20558 1.19631 1.20288 0.86373 0.86674 1.03215 1.21174 0.96709 1.02880 0.95239 1.21751 0.93155 0.93988 1.00092 1.22464 0.97255 1.00679 0.97984 1.23372 0.99284 0.94133 0.89690 1.67726 1.01972 1.12039 1.40113 1.22679 0.93367 0.95145 0.94156 0.89612 0.93793 0.87707 0.79238 0.80492 0.72891 0.95440 0.97307 0.92545 0.88810 0.89455 0.84672 0.81348 0.79605 0.83537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.65 9.54 71.23 0.68 -1.97 16 2 C -0.13 -4.12 5.93 -19.52 -0.12 -4.23 16 3 C -0.06 -1.43 9.82 22.42 0.22 -1.21 16 4 C -0.16 -4.50 10.05 22.55 0.23 -4.27 16 5 C 0.28 10.54 7.74 84.94 0.66 11.20 16 6 O -0.49 -16.98 13.56 -89.84 -1.22 -18.20 16 7 N -0.49 -21.81 9.58 -298.21 -2.86 -24.67 16 8 C 0.10 4.31 4.68 41.84 0.20 4.50 16 9 C 0.58 25.47 5.80 86.88 0.50 25.97 16 10 O -0.57 -25.76 16.56 -3.77 -0.06 -25.82 16 11 N -0.58 -24.89 2.45 -833.59 -2.04 -26.93 16 12 C 0.27 13.06 4.95 85.63 0.42 13.49 16 13 C -0.51 -27.49 8.65 25.60 0.22 -27.27 16 14 H 0.04 2.46 7.81 -2.91 -0.02 2.44 16 15 C 0.03 1.43 5.46 84.65 0.46 1.89 16 16 N -0.92 -50.54 13.29 21.45 0.28 -50.25 16 17 Si 0.95 43.00 29.54 68.60 2.03 45.02 16 18 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 19 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 20 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 21 C 0.16 5.74 5.58 85.63 0.48 6.21 16 22 C -0.16 -5.03 5.48 -19.78 -0.11 -5.14 16 23 C -0.06 -1.74 9.86 22.47 0.22 -1.52 16 24 C -0.16 -3.52 10.11 22.36 0.23 -3.29 16 25 C 0.09 2.12 11.18 84.69 0.95 3.07 16 26 N -0.51 -15.45 10.36 -195.84 -2.03 -17.48 16 27 C 0.10 3.35 10.86 84.67 0.92 4.27 16 28 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 29 H 0.04 1.36 7.27 -2.39 -0.02 1.34 16 30 H 0.10 1.97 8.06 -2.38 -0.02 1.95 16 31 H 0.19 2.82 8.06 -2.91 -0.02 2.79 16 32 H 0.18 3.41 8.06 -2.91 -0.02 3.38 16 33 H 0.41 11.54 9.06 -74.06 -0.67 10.87 16 34 H 0.03 1.39 8.04 -2.39 -0.02 1.37 16 35 H 0.01 0.48 6.97 -2.39 -0.02 0.46 16 36 H 0.27 13.80 8.31 -92.71 -0.77 13.03 16 37 H 0.09 3.34 8.02 -2.39 -0.02 3.33 16 38 H 0.09 3.15 7.31 -2.39 -0.02 3.13 16 39 H 0.14 3.77 7.96 -2.91 -0.02 3.75 16 40 H 0.17 2.31 8.06 -2.91 -0.02 2.29 16 41 H 0.19 2.82 8.06 -2.91 -0.02 2.80 16 42 H 0.15 4.89 8.06 -2.91 -0.02 4.87 16 Total: -1.00 -72.54 369.60 0.65 -71.89 By element: Atomic # 1 Polarization: 24.34 SS G_CDS: 0.39 Total: 24.73 kcal Atomic # 6 Polarization: 15.54 SS G_CDS: 6.16 Total: 21.70 kcal Atomic # 7 Polarization: -112.69 SS G_CDS: -6.64 Total: -119.33 kcal Atomic # 8 Polarization: -42.73 SS G_CDS: -1.28 Total: -44.02 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.02 kcal Total: -72.54 0.65 -71.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193184820.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.115 kcal (2) G-P(sol) polarization free energy of solvation -72.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds