Wall clock time and date at job start Tue Mar 31 2020 15:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.32213 * 119.13504 * 2 1 4 4 C 1.32463 * 120.59613 * 180.26962 * 3 2 1 5 5 C 1.47297 * 120.52064 * 179.69656 * 4 3 2 6 6 O 1.21656 * 119.99993 * 174.19440 * 5 4 3 7 7 N 1.34782 * 119.99463 * 354.20219 * 5 4 3 8 8 C 1.36675 * 120.00146 * 4.26699 * 7 5 4 9 9 H 1.07998 * 120.00484 * 310.97100 * 8 7 5 10 10 C 1.39167 * 119.99770 * 130.97438 * 8 7 5 11 11 N 1.31285 * 120.00119 * 3.74997 * 10 8 7 12 12 Si 1.86801 * 120.00000 * 183.75881 * 10 8 7 13 13 H 1.48508 * 109.46935 * 359.97438 * 12 10 8 14 14 H 1.48496 * 109.47464 * 119.99483 * 12 10 8 15 15 H 1.48499 * 109.47065 * 239.99705 * 12 10 8 16 16 C 1.46502 * 119.99313 * 184.27480 * 7 5 4 17 17 C 1.50692 * 109.47350 * 94.82249 * 16 7 5 18 18 C 1.38242 * 119.99691 * 274.55037 * 17 16 7 19 19 C 1.38236 * 119.99603 * 179.76433 * 18 17 16 20 20 C 1.38236 * 120.00224 * 0.51388 * 19 18 17 21 21 C 1.38234 * 119.99789 * 359.73935 * 20 19 18 22 22 C 1.38228 * 120.00273 * 0.02562 * 21 20 19 23 23 C 1.46757 * 118.96539 * 359.72232 * 4 3 2 24 24 O 1.21848 * 120.78675 * 180.02562 * 23 4 3 25 25 N 1.35153 * 118.42434 * 359.97438 * 23 4 3 26 26 H 0.96998 * 120.36482 * 180.02562 * 25 23 4 27 27 C 1.34997 * 119.26752 * 359.97438 * 25 23 4 28 28 C 1.50696 * 119.49138 * 180.02562 * 27 25 23 29 29 H 1.08996 * 109.47655 * 270.28783 * 1 2 3 30 30 H 1.09006 * 109.46992 * 30.29008 * 1 2 3 31 31 H 1.09001 * 109.47037 * 150.28493 * 1 2 3 32 32 H 0.97003 * 120.00199 * 180.02562 * 11 10 8 33 33 H 1.09005 * 109.46548 * 214.82003 * 16 7 5 34 34 H 1.08995 * 109.47268 * 334.81192 * 16 7 5 35 35 H 1.07990 * 120.00105 * 359.97438 * 18 17 16 36 36 H 1.08003 * 119.99851 * 180.22785 * 19 18 17 37 37 H 1.08003 * 119.99922 * 179.72510 * 20 19 18 38 38 H 1.08000 * 120.00050 * 179.97438 * 21 20 19 39 39 H 1.07999 * 120.00283 * 179.97438 * 22 21 20 40 40 H 1.08999 * 109.47196 * 359.97438 * 28 27 25 41 41 H 1.09001 * 109.47000 * 239.99947 * 28 27 25 42 42 H 1.08996 * 109.47283 * 120.00525 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1507 1.1548 0.0000 4 6 3.4749 1.1886 -0.0054 5 6 4.1903 2.4762 -0.0121 6 8 5.4024 2.4991 0.0896 7 7 3.5020 3.6289 -0.1307 8 6 2.1356 3.6093 -0.1570 9 1 1.6178 2.9272 -0.8150 10 6 1.4115 4.4685 0.6641 11 7 2.0391 5.3484 1.4094 12 14 -0.4534 4.3697 0.7060 13 1 -0.9134 3.3030 -0.2192 14 1 -0.9016 4.0554 2.0864 15 1 -1.0277 5.6723 0.2835 16 6 4.2185 4.9027 -0.2317 17 6 4.3889 5.2696 -1.6833 18 6 5.4606 4.7719 -2.4008 19 6 5.6141 5.1046 -3.7337 20 6 4.7020 5.9434 -4.3463 21 6 3.6333 6.4453 -3.6274 22 6 3.4770 6.1088 -2.2958 23 6 4.2181 -0.0768 -0.0051 24 8 5.4366 -0.0845 -0.0095 25 7 3.5191 -1.2335 0.0012 26 1 3.9817 -2.0860 0.0019 27 6 2.1698 -1.1892 0.0075 28 6 1.3853 -2.4758 0.0151 29 1 -0.3634 0.0052 1.0276 30 1 -0.3633 0.8874 -0.5184 31 1 -0.3633 -0.8925 -0.5094 32 1 1.5344 5.9470 1.9821 33 1 3.6485 5.6813 0.2754 34 1 5.1982 4.8066 0.2363 35 1 6.1759 4.1205 -1.9209 36 1 6.4494 4.7128 -4.2953 37 1 4.8245 6.2068 -5.3865 38 1 2.9208 7.1010 -4.1058 39 1 2.6422 6.5012 -1.7340 40 1 2.0736 -3.3210 0.0139 41 1 0.7532 -2.5212 -0.8718 42 1 0.7617 -2.5158 0.9081 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193966562.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:25:23 Heat of formation + Delta-G solvation = 15.448670 kcal Electronic energy + Delta-G solvation = -28284.500622 eV Core-core repulsion = 24423.795801 eV Total energy + Delta-G solvation = -3860.704821 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.12304 -38.91945 -37.80855 -37.35691 -34.78354 -34.70601 -32.69051 -31.82715 -30.63287 -30.20048 -28.83721 -26.51368 -25.67161 -24.46889 -24.02333 -22.33245 -21.83233 -20.62408 -19.46674 -18.21027 -17.97831 -16.92185 -16.13727 -15.80074 -15.68503 -15.02559 -14.58317 -14.44569 -14.28682 -14.11729 -13.85846 -13.65598 -13.50739 -13.07837 -13.00329 -12.84435 -12.73075 -12.42769 -12.16255 -11.98177 -11.82451 -11.39804 -11.31153 -11.18098 -11.09486 -10.74880 -10.71938 -10.50630 -10.31187 -10.21823 -10.06015 -9.12413 -8.88400 -8.36521 -8.25170 -7.97107 -7.54085 -7.29036 -6.28578 -4.02124 0.76038 2.01235 2.07926 2.23826 2.91699 3.13974 3.22931 3.27604 3.58953 4.09889 4.33165 4.41812 4.55197 4.61285 4.73340 4.87142 5.10452 5.20699 5.24318 5.49263 5.55754 5.57424 5.59641 5.65616 5.78400 5.87706 5.96314 5.99884 6.19603 6.26265 6.30353 6.48194 6.62492 6.69556 6.76927 6.84118 6.95222 7.11189 7.14877 7.27337 7.52216 7.66271 7.73918 8.03080 8.20068 8.39219 8.55801 9.10834 9.47626 9.93429 10.67964 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.010508 B = 0.005652 C = 0.004335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2663.999214 B = 4952.398343 C = 6457.184815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.022 4.022 3 N -0.329 5.329 4 C 0.045 3.955 5 C 0.525 3.475 6 O -0.576 6.576 7 N -0.407 5.407 8 C -0.280 4.280 9 H 0.110 0.890 10 C 0.041 3.959 11 N -0.868 5.868 12 Si 0.919 3.081 13 H -0.262 1.262 14 H -0.282 1.282 15 H -0.284 1.284 16 C 0.130 3.870 17 C -0.074 4.074 18 C -0.108 4.108 19 C -0.132 4.132 20 C -0.135 4.135 21 C -0.133 4.133 22 C -0.093 4.093 23 C 0.492 3.508 24 O -0.500 6.500 25 N -0.596 5.596 26 H 0.410 0.590 27 C 0.098 3.902 28 C -0.116 4.116 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.066 0.934 32 H 0.270 0.730 33 H 0.131 0.869 34 H 0.068 0.932 35 H 0.123 0.877 36 H 0.111 0.889 37 H 0.110 0.890 38 H 0.112 0.888 39 H 0.123 0.877 40 H 0.068 0.932 41 H 0.090 0.910 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.690 -8.424 -5.010 11.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.146 4.146 3 N -0.046 5.046 4 C -0.123 4.123 5 C 0.314 3.686 6 O -0.459 6.459 7 N -0.124 5.124 8 C -0.411 4.411 9 H 0.128 0.872 10 C -0.164 4.164 11 N -0.506 5.506 12 Si 0.746 3.254 13 H -0.186 1.186 14 H -0.208 1.208 15 H -0.210 1.210 16 C 0.008 3.992 17 C -0.075 4.075 18 C -0.126 4.126 19 C -0.151 4.151 20 C -0.154 4.154 21 C -0.151 4.151 22 C -0.112 4.112 23 C 0.284 3.716 24 O -0.372 6.372 25 N -0.233 5.233 26 H 0.249 0.751 27 C -0.015 4.015 28 C -0.174 4.174 29 H 0.087 0.913 30 H 0.098 0.902 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.148 0.852 34 H 0.086 0.914 35 H 0.141 0.859 36 H 0.129 0.871 37 H 0.128 0.872 38 H 0.130 0.870 39 H 0.141 0.859 40 H 0.087 0.913 41 H 0.109 0.891 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.950 -7.471 -4.804 10.169 hybrid contribution -0.454 -1.286 0.103 1.368 sum -5.404 -8.758 -4.700 11.314 Atomic orbital electron populations 1.20514 0.88212 1.03056 1.02527 1.20474 0.97828 0.86580 1.09700 1.68809 1.08206 1.25432 1.02149 1.24164 0.88806 0.93441 1.05852 1.17378 0.86254 0.82720 0.82259 1.90727 1.13158 1.86345 1.55647 1.43289 1.06432 1.02980 1.59699 1.19996 0.79788 1.20863 1.20417 0.87248 1.25598 1.00289 0.95723 0.94764 1.69564 1.36215 1.19459 1.25402 0.85976 0.82846 0.78214 0.78345 1.18577 1.20750 1.21041 1.20834 0.98263 0.89826 0.90250 1.20589 0.93661 0.95289 0.97985 1.21309 0.98329 0.98952 0.94040 1.21035 0.99442 0.99365 0.95219 1.20956 0.95960 0.99343 0.99111 1.21046 0.98164 1.01048 0.94835 1.21139 0.98422 0.97326 0.94316 1.19491 0.88454 0.84270 0.79401 1.90969 1.11782 1.85558 1.48908 1.43591 1.06219 1.11268 1.62189 0.75130 1.21250 0.83521 0.98393 0.98328 1.21013 1.00040 0.91956 1.04358 0.91257 0.90201 0.91554 0.91929 0.85169 0.91407 0.85905 0.87082 0.87224 0.86977 0.85883 0.91268 0.89117 0.89172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.07 9.66 36.01 0.35 -0.72 16 2 C -0.02 -0.35 6.70 -83.18 -0.56 -0.91 16 3 N -0.33 -6.89 6.47 -4.86 -0.03 -6.92 16 4 C 0.05 1.05 6.85 -80.47 -0.55 0.50 16 5 C 0.53 13.89 7.61 -12.57 -0.10 13.79 16 6 O -0.58 -16.47 14.91 -15.16 -0.23 -16.69 16 7 N -0.41 -10.39 2.48 -117.38 -0.29 -10.68 16 8 C -0.28 -6.95 7.38 -15.05 -0.11 -7.06 16 9 H 0.11 2.71 6.10 -52.49 -0.32 2.39 16 10 C 0.04 1.01 5.40 -17.44 -0.09 0.91 16 11 N -0.87 -22.06 10.93 55.51 0.61 -21.45 16 12 Si 0.92 19.05 29.56 -169.99 -5.02 14.03 16 13 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 14 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 15 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 16 C 0.13 3.15 5.27 -5.20 -0.03 3.13 16 17 C -0.07 -1.60 5.43 -104.62 -0.57 -2.17 16 18 C -0.11 -2.23 9.72 -39.58 -0.38 -2.61 16 19 C -0.13 -2.34 10.05 -39.58 -0.40 -2.74 16 20 C -0.14 -2.21 10.05 -39.58 -0.40 -2.61 16 21 C -0.13 -2.27 10.05 -39.59 -0.40 -2.67 16 22 C -0.09 -1.85 9.68 -39.58 -0.38 -2.23 16 23 C 0.49 10.39 7.93 -12.65 -0.10 10.29 16 24 O -0.50 -12.24 16.41 -15.33 -0.25 -12.49 16 25 N -0.60 -8.89 5.29 -9.42 -0.05 -8.94 16 26 H 0.41 4.66 8.64 -40.82 -0.35 4.31 16 27 C 0.10 1.28 6.78 -81.96 -0.56 0.72 16 28 C -0.12 -0.86 8.83 36.00 0.32 -0.54 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.07 0.58 6.42 -51.93 -0.33 0.25 16 32 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16 33 H 0.13 3.27 5.30 -51.93 -0.28 2.99 16 34 H 0.07 1.70 7.20 -51.93 -0.37 1.33 16 35 H 0.12 2.69 7.96 -52.49 -0.42 2.27 16 36 H 0.11 1.69 8.06 -52.48 -0.42 1.26 16 37 H 0.11 1.46 8.06 -52.48 -0.42 1.04 16 38 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 39 H 0.12 2.45 8.06 -52.49 -0.42 2.03 16 40 H 0.07 0.39 7.90 -51.93 -0.41 -0.02 16 41 H 0.09 0.55 7.35 -51.93 -0.38 0.17 16 42 H 0.09 0.57 8.09 -51.93 -0.42 0.15 16 LS Contribution 356.54 15.07 5.37 5.37 Total: -1.00 -33.04 356.54 -8.81 -41.85 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: -4.96 Total: 10.86 kcal Atomic # 6 Polarization: 9.03 SS G_CDS: -3.96 Total: 5.07 kcal Atomic # 7 Polarization: -48.24 SS G_CDS: 0.23 Total: -48.00 kcal Atomic # 8 Polarization: -28.70 SS G_CDS: -0.48 Total: -29.18 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.02 Total: 14.03 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.04 -8.81 -41.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193966562.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.294 kcal (2) G-P(sol) polarization free energy of solvation -33.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds