Wall clock time and date at job start Tue Mar 31 2020 15:25:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.32213 * 119.13504 * 2 1 4 4 C 1.32463 * 120.59613 * 180.26962 * 3 2 1 5 5 C 1.47297 * 120.52064 * 179.69656 * 4 3 2 6 6 O 1.21656 * 119.99993 * 174.19440 * 5 4 3 7 7 N 1.34782 * 119.99463 * 354.20219 * 5 4 3 8 8 C 1.36675 * 120.00146 * 4.26699 * 7 5 4 9 9 H 1.07998 * 120.00484 * 310.97100 * 8 7 5 10 10 C 1.39167 * 119.99770 * 130.97438 * 8 7 5 11 11 N 1.31285 * 120.00119 * 3.74997 * 10 8 7 12 12 Si 1.86801 * 120.00000 * 183.75881 * 10 8 7 13 13 H 1.48508 * 109.46935 * 359.97438 * 12 10 8 14 14 H 1.48496 * 109.47464 * 119.99483 * 12 10 8 15 15 H 1.48499 * 109.47065 * 239.99705 * 12 10 8 16 16 C 1.46502 * 119.99313 * 184.27480 * 7 5 4 17 17 C 1.50692 * 109.47350 * 94.82249 * 16 7 5 18 18 C 1.38242 * 119.99691 * 274.55037 * 17 16 7 19 19 C 1.38236 * 119.99603 * 179.76433 * 18 17 16 20 20 C 1.38236 * 120.00224 * 0.51388 * 19 18 17 21 21 C 1.38234 * 119.99789 * 359.73935 * 20 19 18 22 22 C 1.38228 * 120.00273 * 0.02562 * 21 20 19 23 23 C 1.46757 * 118.96539 * 359.72232 * 4 3 2 24 24 O 1.21848 * 120.78675 * 180.02562 * 23 4 3 25 25 N 1.35153 * 118.42434 * 359.97438 * 23 4 3 26 26 H 0.96998 * 120.36482 * 180.02562 * 25 23 4 27 27 C 1.34997 * 119.26752 * 359.97438 * 25 23 4 28 28 C 1.50696 * 119.49138 * 180.02562 * 27 25 23 29 29 H 1.08996 * 109.47655 * 270.28783 * 1 2 3 30 30 H 1.09006 * 109.46992 * 30.29008 * 1 2 3 31 31 H 1.09001 * 109.47037 * 150.28493 * 1 2 3 32 32 H 0.97003 * 120.00199 * 180.02562 * 11 10 8 33 33 H 1.09005 * 109.46548 * 214.82003 * 16 7 5 34 34 H 1.08995 * 109.47268 * 334.81192 * 16 7 5 35 35 H 1.07990 * 120.00105 * 359.97438 * 18 17 16 36 36 H 1.08003 * 119.99851 * 180.22785 * 19 18 17 37 37 H 1.08003 * 119.99922 * 179.72510 * 20 19 18 38 38 H 1.08000 * 120.00050 * 179.97438 * 21 20 19 39 39 H 1.07999 * 120.00283 * 179.97438 * 22 21 20 40 40 H 1.08999 * 109.47196 * 359.97438 * 28 27 25 41 41 H 1.09001 * 109.47000 * 239.99947 * 28 27 25 42 42 H 1.08996 * 109.47283 * 120.00525 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1507 1.1548 0.0000 4 6 3.4749 1.1886 -0.0054 5 6 4.1903 2.4762 -0.0121 6 8 5.4024 2.4991 0.0896 7 7 3.5020 3.6289 -0.1307 8 6 2.1356 3.6093 -0.1570 9 1 1.6178 2.9272 -0.8150 10 6 1.4115 4.4685 0.6641 11 7 2.0391 5.3484 1.4094 12 14 -0.4534 4.3697 0.7060 13 1 -0.9134 3.3030 -0.2192 14 1 -0.9016 4.0554 2.0864 15 1 -1.0277 5.6723 0.2835 16 6 4.2185 4.9027 -0.2317 17 6 4.3889 5.2696 -1.6833 18 6 5.4606 4.7719 -2.4008 19 6 5.6141 5.1046 -3.7337 20 6 4.7020 5.9434 -4.3463 21 6 3.6333 6.4453 -3.6274 22 6 3.4770 6.1088 -2.2958 23 6 4.2181 -0.0768 -0.0051 24 8 5.4366 -0.0845 -0.0095 25 7 3.5191 -1.2335 0.0012 26 1 3.9817 -2.0860 0.0019 27 6 2.1698 -1.1892 0.0075 28 6 1.3853 -2.4758 0.0151 29 1 -0.3634 0.0052 1.0276 30 1 -0.3633 0.8874 -0.5184 31 1 -0.3633 -0.8925 -0.5094 32 1 1.5344 5.9470 1.9821 33 1 3.6485 5.6813 0.2754 34 1 5.1982 4.8066 0.2363 35 1 6.1759 4.1205 -1.9209 36 1 6.4494 4.7128 -4.2953 37 1 4.8245 6.2068 -5.3865 38 1 2.9208 7.1010 -4.1058 39 1 2.6422 6.5012 -1.7340 40 1 2.0736 -3.3210 0.0139 41 1 0.7532 -2.5212 -0.8718 42 1 0.7617 -2.5158 0.9081 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193966562.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:25:22 Heat of formation + Delta-G solvation = -5.994402 kcal Electronic energy + Delta-G solvation = -28285.430463 eV Core-core repulsion = 24423.795801 eV Total energy + Delta-G solvation = -3861.634662 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.62182 -40.62222 -39.46751 -38.94405 -36.61495 -36.27874 -33.95807 -33.61651 -32.26802 -31.68954 -29.87819 -27.99711 -27.41270 -26.12622 -25.36619 -23.84116 -23.32830 -22.15875 -21.23348 -19.83789 -19.46063 -18.52897 -17.71572 -17.36817 -17.14838 -16.70008 -16.35142 -16.18277 -15.91157 -15.69165 -15.31343 -14.92393 -14.87571 -14.65049 -14.20201 -13.95904 -13.88686 -13.77087 -13.60547 -13.50563 -13.12223 -12.95013 -12.88672 -12.64077 -12.59594 -12.44386 -12.15206 -12.11910 -11.88946 -11.81996 -11.71506 -10.92038 -10.79800 -10.02396 -9.74405 -9.54507 -9.29477 -8.84985 -8.10630 -5.95105 -0.66136 0.51310 0.58011 0.71089 1.48232 1.49265 1.51704 1.66329 1.92629 2.40191 2.74949 2.87404 3.01979 3.18706 3.36313 3.54732 3.61974 3.99921 4.06717 4.15518 4.24146 4.34502 4.38400 4.56926 4.67857 4.70539 4.74989 4.83703 4.90082 4.97549 5.02510 5.13779 5.17582 5.24599 5.33334 5.37117 5.45143 5.63096 5.64680 5.66671 5.74804 5.95591 6.14189 6.22916 6.63122 6.70441 6.91902 7.24945 7.58877 8.05712 8.87679 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.010508 B = 0.005652 C = 0.004335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2663.999214 B = 4952.398343 C = 6457.184815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.063 4.063 3 N -0.322 5.322 4 C -0.036 4.036 5 C 0.511 3.489 6 O -0.621 6.621 7 N -0.418 5.418 8 C -0.291 4.291 9 H 0.108 0.892 10 C -0.001 4.001 11 N -0.908 5.908 12 Si 0.980 3.020 13 H -0.241 1.241 14 H -0.284 1.284 15 H -0.282 1.282 16 C 0.137 3.863 17 C -0.096 4.096 18 C -0.131 4.131 19 C -0.129 4.129 20 C -0.121 4.121 21 C -0.122 4.122 22 C -0.107 4.107 23 C 0.487 3.513 24 O -0.550 6.550 25 N -0.567 5.567 26 H 0.434 0.566 27 C 0.167 3.833 28 C -0.120 4.120 29 H 0.080 0.920 30 H 0.058 0.942 31 H 0.116 0.884 32 H 0.269 0.731 33 H 0.117 0.883 34 H 0.034 0.966 35 H 0.092 0.908 36 H 0.139 0.861 37 H 0.157 0.843 38 H 0.150 0.850 39 H 0.113 0.887 40 H 0.099 0.901 41 H 0.126 0.874 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.489 -11.987 -7.449 17.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.191 4.191 3 N -0.040 5.040 4 C -0.198 4.198 5 C 0.301 3.699 6 O -0.507 6.507 7 N -0.135 5.135 8 C -0.421 4.421 9 H 0.125 0.875 10 C -0.202 4.202 11 N -0.547 5.547 12 Si 0.803 3.197 13 H -0.164 1.164 14 H -0.210 1.210 15 H -0.208 1.208 16 C 0.015 3.985 17 C -0.097 4.097 18 C -0.150 4.150 19 C -0.147 4.147 20 C -0.139 4.139 21 C -0.140 4.140 22 C -0.126 4.126 23 C 0.282 3.718 24 O -0.428 6.428 25 N -0.203 5.203 26 H 0.277 0.723 27 C 0.050 3.950 28 C -0.177 4.177 29 H 0.099 0.901 30 H 0.077 0.923 31 H 0.134 0.866 32 H 0.079 0.921 33 H 0.134 0.866 34 H 0.053 0.947 35 H 0.111 0.889 36 H 0.157 0.843 37 H 0.174 0.826 38 H 0.168 0.832 39 H 0.131 0.869 40 H 0.118 0.882 41 H 0.144 0.856 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -8.739 -11.021 -7.257 15.827 hybrid contribution 0.590 -0.620 0.822 1.187 sum -8.148 -11.641 -6.435 15.599 Atomic orbital electron populations 1.20668 0.84923 1.04590 1.03760 1.21289 0.99928 0.86169 1.11715 1.68537 1.07474 1.28997 0.98977 1.23415 0.89713 0.92805 1.13878 1.18028 0.86151 0.84375 0.81304 1.90644 1.15057 1.87469 1.57563 1.43417 1.06908 1.02946 1.60242 1.20002 0.79429 1.21338 1.21323 0.87526 1.26382 1.04492 0.95145 0.94147 1.69709 1.37689 1.20623 1.26720 0.85069 0.77535 0.78728 0.78365 1.16392 1.21009 1.20824 1.20614 0.96035 0.89568 0.92302 1.20401 0.95351 0.97252 0.96724 1.21176 0.98067 0.99880 0.95875 1.21345 1.00599 0.99060 0.93647 1.21440 0.94272 0.97249 1.00975 1.21441 0.98848 1.00452 0.93273 1.21123 0.97898 0.97592 0.95952 1.19207 0.87857 0.85255 0.79504 1.90927 1.13626 1.86347 1.51923 1.43534 1.07241 1.10786 1.58740 0.72323 1.22375 0.82507 1.00715 0.89406 1.21456 1.00566 0.88513 1.07200 0.90122 0.92255 0.86555 0.92113 0.86597 0.94734 0.88923 0.84338 0.82560 0.83216 0.86915 0.88204 0.85615 0.86045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.66 9.66 71.24 0.69 -0.98 16 2 C -0.06 -1.83 6.70 42.01 0.28 -1.55 16 3 N -0.32 -13.73 6.47 -169.30 -1.10 -14.83 16 4 C -0.04 -1.79 6.85 43.66 0.30 -1.50 16 5 C 0.51 29.89 7.61 86.62 0.66 30.54 16 6 O -0.62 -39.85 14.91 15.29 0.23 -39.62 16 7 N -0.42 -23.57 2.48 -643.51 -1.60 -25.17 16 8 C -0.29 -15.46 7.38 84.16 0.62 -14.83 16 9 H 0.11 5.55 6.10 -2.91 -0.02 5.53 16 10 C 0.00 -0.06 5.40 85.00 0.46 0.40 16 11 N -0.91 -49.71 10.93 21.70 0.24 -49.47 16 12 Si 0.98 39.80 29.56 68.60 2.03 41.82 16 13 H -0.24 -8.84 7.11 99.48 0.71 -8.13 16 14 H -0.28 -11.54 7.11 99.48 0.71 -10.83 16 15 H -0.28 -11.27 7.11 99.48 0.71 -10.57 16 16 C 0.14 7.49 5.27 85.63 0.45 7.94 16 17 C -0.10 -4.56 5.43 -19.87 -0.11 -4.67 16 18 C -0.13 -5.89 9.72 22.27 0.22 -5.67 16 19 C -0.13 -4.53 10.05 22.27 0.22 -4.31 16 20 C -0.12 -3.65 10.05 22.27 0.22 -3.43 16 21 C -0.12 -3.98 10.05 22.27 0.22 -3.76 16 22 C -0.11 -4.43 9.68 22.27 0.22 -4.21 16 23 C 0.49 21.26 7.93 86.41 0.69 21.94 16 24 O -0.55 -28.67 16.41 14.67 0.24 -28.43 16 25 N -0.57 -15.41 5.29 -301.66 -1.60 -17.00 16 26 H 0.43 8.16 8.64 -92.71 -0.80 7.36 16 27 C 0.17 3.54 6.78 41.58 0.28 3.82 16 28 C -0.12 -0.76 8.83 71.23 0.63 -0.13 16 29 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 31 H 0.12 1.16 6.42 -2.39 -0.02 1.14 16 32 H 0.27 13.86 8.31 -92.71 -0.77 13.09 16 33 H 0.12 6.55 5.30 -2.38 -0.01 6.54 16 34 H 0.03 2.01 7.20 -2.39 -0.02 1.99 16 35 H 0.09 4.62 7.96 -2.92 -0.02 4.60 16 36 H 0.14 4.04 8.06 -2.91 -0.02 4.02 16 37 H 0.16 3.33 8.06 -2.91 -0.02 3.31 16 38 H 0.15 3.75 8.06 -2.91 -0.02 3.72 16 39 H 0.11 4.80 8.06 -2.91 -0.02 4.78 16 40 H 0.10 0.22 7.90 -2.39 -0.02 0.21 16 41 H 0.13 0.29 7.35 -2.39 -0.02 0.27 16 42 H 0.12 0.39 8.09 -2.39 -0.02 0.37 16 Total: -1.00 -87.52 356.54 4.77 -82.74 By element: Atomic # 1 Polarization: 30.07 SS G_CDS: 0.28 Total: 30.34 kcal Atomic # 6 Polarization: 13.56 SS G_CDS: 6.05 Total: 19.61 kcal Atomic # 7 Polarization: -102.42 SS G_CDS: -4.05 Total: -106.47 kcal Atomic # 8 Polarization: -68.52 SS G_CDS: 0.47 Total: -68.05 kcal Atomic # 14 Polarization: 39.80 SS G_CDS: 2.03 Total: 41.82 kcal Total: -87.52 4.77 -82.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193966562.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.750 kcal (2) G-P(sol) polarization free energy of solvation -87.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds