Wall clock time and date at job start Tue Mar 31 2020 15:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30496 * 125.64833 * 2 1 4 4 C 1.34127 * 109.25653 * 179.73220 * 3 2 1 5 5 C 1.34669 * 108.01991 * 0.39979 * 4 3 2 6 6 S 1.76197 * 126.59236 * 179.87514 * 5 4 3 7 7 O 1.42103 * 106.40451 * 156.14680 * 6 5 4 8 8 O 1.42098 * 106.40475 * 23.22281 * 6 5 4 9 9 N 1.65599 * 107.21739 * 269.68439 * 6 5 4 10 10 C 1.46497 * 120.00293 * 269.99999 * 9 6 5 11 11 C 1.50701 * 109.47190 * 265.00160 * 10 9 6 12 12 H 1.07998 * 119.99918 * 359.97438 * 11 10 9 13 13 C 1.37879 * 120.00217 * 179.97438 * 11 10 9 14 14 N 1.31522 * 119.99890 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00275 * 179.97438 * 13 11 10 16 16 H 1.48507 * 109.46883 * 89.99700 * 15 13 11 17 17 H 1.48497 * 109.47057 * 209.99680 * 15 13 11 18 18 H 1.48499 * 109.47041 * 330.00133 * 15 13 11 19 19 C 1.46500 * 119.99991 * 90.00235 * 9 6 5 20 20 C 1.54961 * 110.92632 * 126.53959 * 19 9 6 21 21 C 1.54270 * 104.16191 * 156.29508 * 20 19 9 22 22 C 1.53869 * 106.63967 * 336.44607 * 21 20 19 23 23 C 1.54268 * 106.60115 * 359.97438 * 22 21 20 24 24 N 1.35040 * 125.65015 * 179.97438 * 2 1 3 25 25 C 1.46500 * 126.39724 * 0.02562 * 24 2 1 26 26 H 1.09001 * 109.47021 * 270.02121 * 1 2 3 27 27 H 1.08993 * 109.46942 * 30.02795 * 1 2 3 28 28 H 1.08996 * 109.46759 * 150.02454 * 1 2 3 29 29 H 1.07997 * 125.99250 * 180.24581 * 4 3 2 30 30 H 1.08998 * 109.47310 * 24.99991 * 10 9 6 31 31 H 1.09000 * 109.47511 * 145.00204 * 10 9 6 32 32 H 0.96990 * 120.00233 * 180.02562 * 14 13 11 33 33 H 1.09001 * 110.67461 * 3.23071 * 19 9 6 34 34 H 1.08997 * 110.47708 * 37.64106 * 20 19 9 35 35 H 1.09002 * 110.53308 * 274.97498 * 20 19 9 36 36 H 1.09002 * 110.03399 * 217.13605 * 21 20 19 37 37 H 1.08995 * 110.02943 * 95.75505 * 21 20 19 38 38 H 1.08999 * 110.03405 * 119.26051 * 22 21 20 39 39 H 1.09001 * 110.03705 * 240.64196 * 22 21 20 40 40 H 1.08997 * 110.48788 * 142.28685 * 23 22 21 41 41 H 1.09000 * 110.48806 * 264.79985 * 23 22 21 42 42 H 1.09005 * 109.47135 * 269.99539 * 25 24 2 43 43 H 1.09000 * 109.47136 * 29.99905 * 25 24 2 44 44 H 1.09001 * 109.46754 * 150.00288 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2676 1.0604 0.0000 4 6 3.5543 0.6819 0.0059 5 6 3.5926 -0.6642 0.0008 6 16 5.0366 -1.6739 0.0020 7 8 4.6491 -2.9278 0.5470 8 8 6.0814 -0.8794 0.5464 9 7 5.4390 -1.9558 -1.5794 10 6 4.8900 -3.1201 -2.2787 11 6 5.8710 -4.2614 -2.2009 12 1 6.8098 -4.1322 -1.6829 13 6 5.5702 -5.4706 -2.7912 14 7 4.4267 -5.6282 -3.4217 15 14 6.7865 -6.8851 -2.6955 16 1 6.5121 -7.6925 -1.4796 17 1 6.6458 -7.7414 -3.9005 18 1 8.1686 -6.3458 -2.6300 19 6 6.3441 -1.0407 -2.2792 20 6 7.5306 -1.8115 -2.9112 21 6 8.0075 -0.8961 -4.0578 22 6 6.8103 -0.0082 -4.4397 23 6 5.6463 -0.4149 -3.5125 24 7 2.2941 -1.0973 0.0005 25 6 1.8426 -2.4910 0.0006 26 1 -0.3633 0.0004 1.0277 27 1 -0.3633 0.8897 -0.5142 28 1 -0.3633 -0.8902 -0.5134 29 1 4.4098 1.3411 0.0111 30 1 3.9510 -3.4157 -1.8106 31 1 4.7109 -2.8656 -3.3233 32 1 4.2149 -6.4789 -3.8366 33 1 6.7043 -0.2645 -1.6040 34 1 7.1957 -2.7716 -3.3038 35 1 8.3267 -1.9538 -2.1804 36 1 8.3139 -1.4981 -4.9133 37 1 8.8387 -0.2772 -3.7202 38 1 7.0602 1.0416 -4.2867 39 1 6.5361 -0.1785 -5.4808 40 1 5.0678 0.4612 -3.2197 41 1 5.0056 -1.1475 -4.0033 42 1 1.7303 -2.8365 1.0283 43 1 0.8841 -2.5624 -0.5136 44 1 2.5775 -3.1110 -0.5128 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198377858.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:50:16 Heat of formation + Delta-G solvation = -21.847271 kcal Electronic energy + Delta-G solvation = -27806.721066 eV Core-core repulsion = 24079.842923 eV Total energy + Delta-G solvation = -3726.878143 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.06006 -38.16925 -36.79493 -35.31915 -34.27080 -33.95547 -32.34572 -31.94486 -28.27661 -27.83635 -27.52626 -26.64609 -26.15927 -22.79270 -22.01409 -20.20164 -19.84138 -19.82265 -18.32401 -17.62568 -17.05533 -16.49693 -15.94248 -15.56773 -15.52235 -14.99583 -14.59027 -14.32238 -13.86515 -13.43250 -13.35304 -13.03753 -12.93199 -12.85677 -12.66310 -12.61473 -12.41629 -12.33632 -11.76592 -11.57328 -11.47044 -11.22868 -11.11479 -11.04560 -10.86200 -10.78601 -10.63528 -10.58189 -10.29556 -10.05258 -9.98954 -9.80352 -9.64890 -9.55104 -8.70382 -8.50598 -8.09886 -6.15119 -4.17213 0.85947 1.62050 2.75458 2.96831 3.27551 3.34050 3.37381 3.62095 4.23336 4.31204 4.38346 4.70905 4.83812 4.95582 5.08094 5.08531 5.17394 5.23459 5.26348 5.31831 5.38063 5.56868 5.59782 5.63314 5.77484 5.91786 6.00495 6.03567 6.09916 6.13791 6.16853 6.26853 6.32902 6.48893 6.58738 6.75262 6.79153 7.08175 7.14302 7.18471 7.32271 7.56825 7.83040 7.89884 8.10892 8.84399 9.46669 10.93191 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.011644 B = 0.005796 C = 0.004662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2404.058830 B = 4829.940592 C = 6004.907528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.234 3.766 3 N -0.502 5.502 4 C 0.089 3.911 5 C -0.594 4.594 6 S 2.706 3.294 7 O -0.943 6.943 8 O -0.964 6.964 9 N -0.971 5.971 10 C 0.256 3.744 11 C -0.522 4.522 12 H 0.065 0.935 13 C 0.064 3.936 14 N -0.895 5.895 15 Si 0.894 3.106 16 H -0.279 1.279 17 H -0.287 1.287 18 H -0.272 1.272 19 C 0.149 3.851 20 C -0.137 4.137 21 C -0.122 4.122 22 C -0.119 4.119 23 C -0.137 4.137 24 N -0.398 5.398 25 C 0.050 3.950 26 H 0.084 0.916 27 H 0.093 0.907 28 H 0.079 0.921 29 H 0.182 0.818 30 H 0.033 0.967 31 H 0.041 0.959 32 H 0.264 0.736 33 H 0.092 0.908 34 H 0.113 0.887 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.056 0.944 38 H 0.058 0.942 39 H 0.060 0.940 40 H 0.058 0.942 41 H 0.079 0.921 42 H 0.088 0.912 43 H 0.092 0.908 44 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.422 9.687 1.585 10.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.030 4.030 3 N -0.221 5.221 4 C -0.067 4.067 5 C -0.788 4.788 6 S 2.791 3.209 7 O -0.932 6.932 8 O -0.953 6.953 9 N -0.810 5.810 10 C 0.135 3.865 11 C -0.562 4.562 12 H 0.083 0.917 13 C -0.138 4.138 14 N -0.534 5.534 15 Si 0.721 3.279 16 H -0.205 1.205 17 H -0.212 1.212 18 H -0.196 1.196 19 C 0.042 3.958 20 C -0.176 4.176 21 C -0.161 4.161 22 C -0.157 4.157 23 C -0.176 4.176 24 N -0.077 5.077 25 C -0.091 4.091 26 H 0.103 0.897 27 H 0.111 0.889 28 H 0.097 0.903 29 H 0.199 0.801 30 H 0.051 0.949 31 H 0.059 0.941 32 H 0.073 0.927 33 H 0.110 0.890 34 H 0.131 0.869 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.098 0.902 42 H 0.107 0.893 43 H 0.110 0.890 44 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -4.521 9.859 2.234 11.074 hybrid contribution 0.315 -1.232 -0.326 1.313 sum -4.205 8.627 1.907 9.785 Atomic orbital electron populations 1.20286 0.84452 1.04455 1.03843 1.23781 0.96048 0.81771 1.01384 1.70281 1.01964 1.28213 1.21670 1.22249 0.95284 0.90999 0.98135 1.34360 1.05552 1.11239 1.27658 1.01789 0.72717 0.72884 0.73552 1.93583 1.83468 1.39516 1.76675 1.93532 1.52271 1.72215 1.77312 1.57457 1.57426 1.35199 1.30870 1.19105 0.93854 0.80307 0.93249 1.21470 1.03964 0.95983 1.34733 0.91671 1.24907 0.95475 0.98419 0.95042 1.69907 1.22347 1.25379 1.35765 0.86556 0.81577 0.82162 0.77558 1.20481 1.21250 1.19646 1.21749 0.89826 0.90841 0.93350 1.22910 0.96501 1.01366 0.96839 1.22088 0.97283 0.97814 0.98890 1.22025 0.95447 0.98961 0.99262 1.22738 0.97938 1.00333 0.96610 1.44926 1.04054 1.08198 1.50552 1.22580 1.03184 0.78256 1.05108 0.89716 0.88863 0.90268 0.80105 0.94940 0.94081 0.92687 0.88974 0.86926 0.92120 0.92018 0.92555 0.92364 0.92124 0.92285 0.90214 0.89301 0.88967 0.86970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.68 10.19 36.01 0.37 -0.31 16 2 C 0.23 3.44 7.90 -155.42 -1.23 2.21 16 3 N -0.50 -8.32 11.25 -10.82 -0.12 -8.44 16 4 C 0.09 1.49 11.64 -17.81 -0.21 1.28 16 5 C -0.59 -10.45 7.02 -16.56 -0.12 -10.56 16 6 S 2.71 53.24 5.65 -107.50 -0.61 52.63 16 7 O -0.94 -20.89 14.92 -57.17 -0.85 -21.75 16 8 O -0.96 -19.76 16.44 -57.17 -0.94 -20.70 16 9 N -0.97 -19.20 2.84 -106.42 -0.30 -19.50 16 10 C 0.26 5.86 4.58 -5.19 -0.02 5.84 16 11 C -0.52 -13.33 7.14 -34.44 -0.25 -13.58 16 12 H 0.07 1.68 7.36 -52.49 -0.39 1.29 16 13 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 14 N -0.90 -24.27 13.29 55.43 0.74 -23.53 16 15 Si 0.89 20.68 29.54 -169.99 -5.02 15.66 16 16 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 17 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 19 C 0.15 2.60 3.31 -65.89 -0.22 2.38 16 20 C -0.14 -2.40 5.81 -25.03 -0.15 -2.54 16 21 C -0.12 -1.74 6.80 -25.61 -0.17 -1.92 16 22 C -0.12 -1.60 6.80 -25.62 -0.17 -1.77 16 23 C -0.14 -2.12 6.39 -25.07 -0.16 -2.28 16 24 N -0.40 -6.35 3.15 -120.30 -0.38 -6.73 16 25 C 0.05 0.70 10.11 59.85 0.60 1.31 16 26 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.08 0.60 7.07 -51.93 -0.37 0.24 16 29 H 0.18 2.61 8.06 -52.49 -0.42 2.18 16 30 H 0.03 0.78 5.78 -51.93 -0.30 0.48 16 31 H 0.04 0.97 6.35 -51.93 -0.33 0.64 16 32 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 33 H 0.09 1.51 6.96 -51.93 -0.36 1.15 16 34 H 0.11 2.30 5.43 -51.93 -0.28 2.02 16 35 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.08 1.36 6.33 -51.93 -0.33 1.03 16 42 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 43 H 0.09 0.96 7.04 -51.93 -0.37 0.59 16 44 H 0.11 1.89 5.00 -51.93 -0.26 1.63 16 LS Contribution 358.53 15.07 5.40 5.40 Total: -1.00 -31.69 358.53 -10.25 -41.93 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -6.34 Total: 3.37 kcal Atomic # 6 Polarization: -16.53 SS G_CDS: -1.82 Total: -18.35 kcal Atomic # 7 Polarization: -58.14 SS G_CDS: -0.07 Total: -58.20 kcal Atomic # 8 Polarization: -40.65 SS G_CDS: -1.79 Total: -42.45 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Atomic # 16 Polarization: 53.24 SS G_CDS: -0.61 Total: 52.63 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.69 -10.25 -41.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198377858.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.086 kcal (2) G-P(sol) polarization free energy of solvation -31.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds