Wall clock time and date at job start Tue Mar 31 2020 14:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38399 * 119.39122 * 2 1 4 4 C 1.38329 * 119.51019 * 180.23329 * 3 2 1 5 5 C 1.50701 * 120.81793 * 179.77084 * 4 3 2 6 6 C 1.39977 * 118.37043 * 359.49810 * 4 3 2 7 7 C 1.47429 * 120.61237 * 180.27763 * 6 4 3 8 8 N 1.34780 * 119.99572 * 269.99527 * 7 6 4 9 9 O 1.21597 * 120.00158 * 89.99511 * 7 6 4 10 10 C 1.40538 * 118.77916 * 0.25146 * 6 4 3 11 11 N 1.38334 * 119.82528 * 180.02562 * 10 6 4 12 12 C 1.39864 * 119.99918 * 174.72823 * 11 10 6 13 13 C 1.38956 * 120.00287 * 326.98103 * 12 11 10 14 14 C 1.37990 * 119.99397 * 179.79081 * 13 12 11 15 15 C 1.38914 * 120.00559 * 0.48792 * 14 13 12 16 16 O 1.35785 * 119.99387 * 179.72406 * 15 14 13 17 17 C 1.34817 * 116.99369 * 185.54403 * 16 15 14 18 18 H 1.07996 * 120.00386 * 354.88916 * 17 16 15 19 19 C 1.38621 * 119.99547 * 174.88656 * 17 16 15 20 20 N 1.31579 * 120.00077 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00207 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47071 * 59.99760 * 21 19 17 23 23 H 1.48494 * 109.47444 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.46950 * 299.99918 * 21 19 17 25 25 C 1.38909 * 120.00969 * 359.73868 * 15 14 13 26 26 C 1.37999 * 120.00311 * 0.02918 * 25 15 14 27 27 N 1.31836 * 119.39166 * 179.71863 * 2 1 3 28 28 H 1.09005 * 109.47187 * 270.27685 * 1 2 3 29 29 H 1.08995 * 109.47479 * 30.28143 * 1 2 3 30 30 H 1.08997 * 109.47069 * 150.28240 * 1 2 3 31 31 H 1.07998 * 120.24470 * 359.97438 * 3 2 1 32 32 H 1.09000 * 109.47507 * 269.72018 * 5 4 3 33 33 H 1.09003 * 109.47133 * 149.71873 * 5 4 3 34 34 H 1.09001 * 109.47087 * 29.71973 * 5 4 3 35 35 H 0.96996 * 120.00025 * 0.02562 * 8 7 6 36 36 H 0.96995 * 119.99485 * 179.97438 * 8 7 6 37 37 H 0.96994 * 120.00239 * 354.71375 * 11 10 6 38 38 H 1.08001 * 120.00231 * 0.02562 * 13 12 11 39 39 H 1.08004 * 120.00137 * 180.20895 * 14 13 12 40 40 H 0.97006 * 120.00601 * 180.02562 * 20 19 17 41 41 H 1.07998 * 119.99913 * 179.97438 * 25 15 14 42 42 H 1.08007 * 120.00101 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1861 1.2059 0.0000 4 6 3.5694 1.2087 -0.0049 5 6 4.3388 2.5046 -0.0102 6 6 4.2371 -0.0215 0.0011 7 6 5.7104 -0.0761 0.0024 8 7 6.3846 -0.1063 -1.1643 9 8 6.3172 -0.0938 1.0560 10 6 3.4773 -1.2037 0.0063 11 7 4.1148 -2.4314 0.0128 12 6 3.3667 -3.6073 0.1293 13 6 2.1994 -3.6164 0.8832 14 6 1.4591 -4.7755 0.9945 15 6 1.8860 -5.9360 0.3614 16 8 1.1603 -7.0779 0.4757 17 6 1.6872 -8.1946 -0.0657 18 1 2.6043 -8.1387 -0.6332 19 6 1.0517 -9.4145 0.1062 20 7 -0.0654 -9.4826 0.7981 21 14 1.7820 -10.9619 -0.6432 22 1 3.1422 -11.1850 -0.0908 23 1 0.9187 -12.1251 -0.3165 24 1 1.8659 -10.8058 -2.1176 25 6 3.0554 -5.9284 -0.3884 26 6 3.7935 -4.7681 -0.5039 27 7 2.1539 -1.1487 0.0056 28 1 -0.3634 0.0050 1.0277 29 1 -0.3634 0.8874 -0.5182 30 1 -0.3633 -0.8925 -0.5094 31 1 1.6402 2.1377 -0.0004 32 1 4.5250 2.8124 -1.0391 33 1 5.2892 2.3649 0.5049 34 1 3.7586 3.2736 0.4998 35 1 5.9005 -0.0918 -2.0047 36 1 7.3539 -0.1418 -1.1634 37 1 5.0807 -2.4767 -0.0637 38 1 1.8696 -2.7153 1.3788 39 1 0.5500 -4.7818 1.5776 40 1 -0.5100 -10.3363 0.9188 41 1 3.3873 -6.8307 -0.8802 42 1 4.7029 -4.7623 -1.0866 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212604920.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:48 Heat of formation + Delta-G solvation = 1.393545 kcal Electronic energy + Delta-G solvation = -26742.107708 eV Core-core repulsion = 22880.793411 eV Total energy + Delta-G solvation = -3861.314297 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.02162 -39.19280 -38.85951 -37.25380 -34.95383 -34.33954 -33.62440 -32.26869 -31.32048 -30.16580 -28.83489 -27.62587 -27.17014 -25.30259 -23.45811 -22.14160 -22.01493 -20.90986 -20.34407 -18.19880 -17.99470 -17.59977 -17.24099 -17.05021 -16.51126 -15.66913 -15.04334 -14.86962 -14.52727 -14.35691 -14.33076 -13.87700 -13.72118 -13.54084 -13.49132 -13.06995 -12.99911 -12.82368 -12.64456 -12.44240 -12.39925 -11.97810 -11.78293 -11.54655 -11.46855 -11.05463 -10.72043 -10.50737 -10.43269 -10.22415 -9.99858 -9.54837 -9.37542 -9.22369 -8.84813 -8.18777 -8.15970 -6.73030 -6.42810 -4.00574 0.91286 1.27077 2.21340 2.28949 2.40600 3.12368 3.14422 3.15662 3.17798 3.31347 3.69481 3.98226 4.28577 4.44377 4.60338 4.69878 4.84714 5.02493 5.11524 5.21275 5.22713 5.31929 5.35220 5.47355 5.55885 5.56999 5.63366 5.76894 5.81185 5.97085 6.09972 6.17733 6.22954 6.40323 6.45275 6.60099 6.81338 6.86578 7.00196 7.03743 7.21475 7.32590 7.46749 7.54415 7.85230 7.95907 8.01677 8.22955 9.02543 9.73408 10.75142 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.020073 B = 0.002757 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.564581 B =10155.319789 C =11226.783981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.200 3.800 3 C -0.243 4.243 4 C 0.036 3.964 5 C -0.122 4.122 6 C -0.273 4.273 7 C 0.580 3.420 8 N -0.849 5.849 9 O -0.533 6.533 10 C 0.443 3.557 11 N -0.640 5.640 12 C 0.048 3.952 13 C -0.059 4.059 14 C -0.177 4.177 15 C 0.146 3.854 16 O -0.177 6.177 17 C -0.391 4.391 18 H 0.091 0.909 19 C 0.039 3.961 20 N -0.863 5.863 21 Si 0.940 3.060 22 H -0.270 1.270 23 H -0.278 1.278 24 H -0.270 1.270 25 C -0.218 4.218 26 C -0.094 4.094 27 N -0.524 5.524 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.134 0.866 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.404 0.596 36 H 0.402 0.598 37 H 0.408 0.592 38 H 0.126 0.874 39 H 0.120 0.880 40 H 0.270 0.730 41 H 0.130 0.870 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.488 21.985 -5.845 23.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.059 3.941 3 C -0.266 4.266 4 C 0.028 3.972 5 C -0.178 4.178 6 C -0.284 4.284 7 C 0.364 3.636 8 N -0.413 5.413 9 O -0.408 6.408 10 C 0.206 3.794 11 N -0.262 5.262 12 C -0.045 4.045 13 C -0.079 4.079 14 C -0.197 4.197 15 C 0.092 3.908 16 O -0.081 6.081 17 C -0.468 4.468 18 H 0.108 0.892 19 C -0.165 4.165 20 N -0.498 5.498 21 Si 0.765 3.235 22 H -0.195 1.195 23 H -0.203 1.203 24 H -0.195 1.195 25 C -0.238 4.238 26 C -0.115 4.115 27 N -0.242 5.242 28 H 0.101 0.899 29 H 0.095 0.905 30 H 0.101 0.899 31 H 0.152 0.848 32 H 0.097 0.903 33 H 0.089 0.911 34 H 0.096 0.904 35 H 0.232 0.768 36 H 0.233 0.767 37 H 0.245 0.755 38 H 0.144 0.856 39 H 0.138 0.862 40 H 0.080 0.920 41 H 0.148 0.852 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 6.786 20.805 -4.866 22.418 hybrid contribution 1.532 -0.091 -0.950 1.804 sum 8.318 20.713 -5.816 23.066 Atomic orbital electron populations 1.20804 0.88563 1.03778 1.03484 1.21219 0.96790 0.87317 0.88796 1.21389 0.93372 0.99117 1.12709 1.19909 0.93617 0.93205 0.90444 1.20893 1.00247 0.93794 1.02897 1.19714 0.93027 0.93647 1.21989 1.18017 0.87094 0.74756 0.83733 1.43968 1.11085 1.77614 1.08658 1.90865 1.70013 1.48693 1.31272 1.18099 0.88275 0.84483 0.88584 1.41752 1.08174 1.01607 1.74648 1.17212 0.97014 0.85200 1.05075 1.20593 0.93782 0.97028 0.96543 1.20103 1.02690 0.91053 1.05804 1.19396 0.90141 0.88189 0.93084 1.83990 1.41828 1.13668 1.68577 1.21254 1.09470 0.83366 1.32666 0.89196 1.25268 0.95984 0.98360 0.96896 1.70038 1.16027 1.26471 1.37272 0.85800 0.78762 0.79745 0.79227 1.19544 1.20292 1.19543 1.20931 0.97961 0.98577 1.06306 1.20423 0.99821 0.92182 0.99071 1.67405 1.06600 1.28865 1.21308 0.89916 0.90549 0.89893 0.84808 0.90251 0.91059 0.90368 0.76788 0.76684 0.75532 0.85581 0.86196 0.91995 0.85202 0.87471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.02 10.16 36.00 0.37 -0.65 16 2 C 0.20 2.42 6.78 -82.54 -0.56 1.86 16 3 C -0.24 -2.48 9.41 -39.49 -0.37 -2.85 16 4 C 0.04 0.39 5.95 -103.94 -0.62 -0.23 16 5 C -0.12 -0.94 9.69 36.01 0.35 -0.59 16 6 C -0.27 -3.45 5.66 -104.64 -0.59 -4.04 16 7 C 0.58 6.92 4.90 -12.52 -0.06 6.86 16 8 N -0.85 -6.24 8.87 30.43 0.27 -5.97 16 9 O -0.53 -8.47 17.94 5.28 0.09 -8.38 16 10 C 0.44 6.59 7.23 -155.09 -1.12 5.47 16 11 N -0.64 -9.88 5.39 -9.76 -0.05 -9.93 16 12 C 0.05 0.88 6.30 -83.66 -0.53 0.35 16 13 C -0.06 -1.15 8.57 -39.41 -0.34 -1.49 16 14 C -0.18 -3.84 9.98 -39.42 -0.39 -4.24 16 15 C 0.15 3.54 6.65 -39.08 -0.26 3.28 16 16 O -0.18 -5.07 9.76 -0.02 0.00 -5.07 16 17 C -0.39 -10.92 9.48 30.87 0.29 -10.63 16 18 H 0.09 2.31 5.20 -52.49 -0.27 2.04 16 19 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 20 N -0.86 -25.37 13.67 55.48 0.76 -24.61 16 21 Si 0.94 20.51 29.55 -169.99 -5.02 15.49 16 22 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 23 H -0.28 -5.94 7.11 56.52 0.40 -5.53 16 24 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 25 C -0.22 -4.73 9.16 -39.42 -0.36 -5.09 16 26 C -0.09 -1.75 9.95 -39.41 -0.39 -2.14 16 27 N -0.52 -7.94 6.94 -8.41 -0.06 -8.00 16 28 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.08 0.51 8.07 -51.93 -0.42 0.09 16 30 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 32 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.64 7.19 -51.93 -0.37 0.27 16 34 H 0.08 0.48 8.10 -51.93 -0.42 0.06 16 35 H 0.40 2.17 8.81 -40.82 -0.36 1.81 16 36 H 0.40 2.30 8.93 -40.82 -0.36 1.93 16 37 H 0.41 5.61 7.66 -40.82 -0.31 5.29 16 38 H 0.13 2.34 6.23 -52.49 -0.33 2.02 16 39 H 0.12 2.52 8.06 -52.48 -0.42 2.09 16 40 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 41 H 0.13 2.79 5.63 -52.49 -0.30 2.49 16 42 H 0.11 1.66 8.06 -52.48 -0.42 1.24 16 LS Contribution 361.53 15.07 5.45 5.45 Total: -1.00 -34.62 361.53 -8.06 -42.68 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: -4.82 Total: 11.48 kcal Atomic # 6 Polarization: -8.46 SS G_CDS: -4.68 Total: -13.14 kcal Atomic # 7 Polarization: -49.43 SS G_CDS: 0.92 Total: -48.51 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: 0.09 Total: -13.44 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.62 -8.06 -42.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212604920.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.076 kcal (2) G-P(sol) polarization free energy of solvation -34.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds