Wall clock time and date at job start Tue Mar 31 2020 14:41:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38399 * 119.39122 * 2 1 4 4 C 1.38329 * 119.51019 * 180.23329 * 3 2 1 5 5 C 1.50701 * 120.81793 * 179.77084 * 4 3 2 6 6 C 1.39977 * 118.37043 * 359.49810 * 4 3 2 7 7 C 1.47429 * 120.61237 * 180.27763 * 6 4 3 8 8 N 1.34780 * 119.99572 * 269.99527 * 7 6 4 9 9 O 1.21597 * 120.00158 * 89.99511 * 7 6 4 10 10 C 1.40538 * 118.77916 * 0.25146 * 6 4 3 11 11 N 1.38334 * 119.82528 * 180.02562 * 10 6 4 12 12 C 1.39864 * 119.99918 * 174.72823 * 11 10 6 13 13 C 1.38956 * 120.00287 * 326.98103 * 12 11 10 14 14 C 1.37990 * 119.99397 * 179.79081 * 13 12 11 15 15 C 1.38914 * 120.00559 * 0.48792 * 14 13 12 16 16 O 1.35785 * 119.99387 * 179.72406 * 15 14 13 17 17 C 1.34817 * 116.99369 * 185.54403 * 16 15 14 18 18 H 1.07996 * 120.00386 * 354.88916 * 17 16 15 19 19 C 1.38621 * 119.99547 * 174.88656 * 17 16 15 20 20 N 1.31579 * 120.00077 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00207 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47071 * 59.99760 * 21 19 17 23 23 H 1.48494 * 109.47444 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.46950 * 299.99918 * 21 19 17 25 25 C 1.38909 * 120.00969 * 359.73868 * 15 14 13 26 26 C 1.37999 * 120.00311 * 0.02918 * 25 15 14 27 27 N 1.31836 * 119.39166 * 179.71863 * 2 1 3 28 28 H 1.09005 * 109.47187 * 270.27685 * 1 2 3 29 29 H 1.08995 * 109.47479 * 30.28143 * 1 2 3 30 30 H 1.08997 * 109.47069 * 150.28240 * 1 2 3 31 31 H 1.07998 * 120.24470 * 359.97438 * 3 2 1 32 32 H 1.09000 * 109.47507 * 269.72018 * 5 4 3 33 33 H 1.09003 * 109.47133 * 149.71873 * 5 4 3 34 34 H 1.09001 * 109.47087 * 29.71973 * 5 4 3 35 35 H 0.96996 * 120.00025 * 0.02562 * 8 7 6 36 36 H 0.96995 * 119.99485 * 179.97438 * 8 7 6 37 37 H 0.96994 * 120.00239 * 354.71375 * 11 10 6 38 38 H 1.08001 * 120.00231 * 0.02562 * 13 12 11 39 39 H 1.08004 * 120.00137 * 180.20895 * 14 13 12 40 40 H 0.97006 * 120.00601 * 180.02562 * 20 19 17 41 41 H 1.07998 * 119.99913 * 179.97438 * 25 15 14 42 42 H 1.08007 * 120.00101 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1861 1.2059 0.0000 4 6 3.5694 1.2087 -0.0049 5 6 4.3388 2.5046 -0.0102 6 6 4.2371 -0.0215 0.0011 7 6 5.7104 -0.0761 0.0024 8 7 6.3846 -0.1063 -1.1643 9 8 6.3172 -0.0938 1.0560 10 6 3.4773 -1.2037 0.0063 11 7 4.1148 -2.4314 0.0128 12 6 3.3667 -3.6073 0.1293 13 6 2.1994 -3.6164 0.8832 14 6 1.4591 -4.7755 0.9945 15 6 1.8860 -5.9360 0.3614 16 8 1.1603 -7.0779 0.4757 17 6 1.6872 -8.1946 -0.0657 18 1 2.6043 -8.1387 -0.6332 19 6 1.0517 -9.4145 0.1062 20 7 -0.0654 -9.4826 0.7981 21 14 1.7820 -10.9619 -0.6432 22 1 3.1422 -11.1850 -0.0908 23 1 0.9187 -12.1251 -0.3165 24 1 1.8659 -10.8058 -2.1176 25 6 3.0554 -5.9284 -0.3884 26 6 3.7935 -4.7681 -0.5039 27 7 2.1539 -1.1487 0.0056 28 1 -0.3634 0.0050 1.0277 29 1 -0.3634 0.8874 -0.5182 30 1 -0.3633 -0.8925 -0.5094 31 1 1.6402 2.1377 -0.0004 32 1 4.5250 2.8124 -1.0391 33 1 5.2892 2.3649 0.5049 34 1 3.7586 3.2736 0.4998 35 1 5.9005 -0.0918 -2.0047 36 1 7.3539 -0.1418 -1.1634 37 1 5.0807 -2.4767 -0.0637 38 1 1.8696 -2.7153 1.3788 39 1 0.5500 -4.7818 1.5776 40 1 -0.5100 -10.3363 0.9188 41 1 3.3873 -6.8307 -0.8802 42 1 4.7029 -4.7623 -1.0866 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212604920.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:47 Heat of formation + Delta-G solvation = -23.143063 kcal Electronic energy + Delta-G solvation = -26743.171695 eV Core-core repulsion = 22880.793411 eV Total energy + Delta-G solvation = -3862.378284 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.04114 -40.76199 -39.95304 -38.82003 -36.36032 -35.23639 -34.43747 -34.20674 -32.50584 -31.76878 -29.93044 -28.63058 -28.28067 -27.22260 -24.61613 -23.59529 -23.24866 -22.19271 -21.38047 -19.87717 -19.14077 -18.89497 -18.55037 -17.95213 -17.89971 -16.92892 -16.34232 -16.18498 -15.85449 -15.78963 -15.47172 -15.30410 -15.13720 -14.72930 -14.57484 -14.29391 -14.12324 -13.99701 -13.79314 -13.51557 -13.43861 -13.24491 -13.13226 -13.02254 -12.68040 -12.65176 -12.41700 -12.14912 -11.54850 -11.46075 -11.16804 -10.79412 -10.73096 -10.48270 -10.29584 -9.80137 -9.48596 -8.44240 -8.26197 -6.10738 -0.04907 0.26137 0.55217 0.84458 1.36474 1.36891 1.47405 1.52755 1.98476 2.20014 2.48563 2.68615 2.87893 3.18272 3.36526 3.55021 3.65770 3.86661 3.97213 4.05357 4.14584 4.19396 4.45069 4.51349 4.55313 4.62690 4.68742 4.72635 4.81191 4.84586 4.99413 5.06459 5.09248 5.21532 5.24110 5.29273 5.38507 5.45544 5.62145 5.68700 5.77701 5.90438 6.04324 6.26102 6.29019 6.34753 7.00304 7.14722 7.21731 7.81649 8.79105 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.020073 B = 0.002757 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.564581 B =10155.319789 C =11226.783981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.180 3.820 3 C -0.224 4.224 4 C 0.032 3.968 5 C -0.118 4.118 6 C -0.273 4.273 7 C 0.583 3.417 8 N -0.823 5.823 9 O -0.578 6.578 10 C 0.418 3.582 11 N -0.645 5.645 12 C 0.080 3.920 13 C -0.061 4.061 14 C -0.182 4.182 15 C 0.106 3.894 16 O -0.231 6.231 17 C -0.413 4.413 18 H 0.103 0.897 19 C -0.024 4.024 20 N -0.922 5.922 21 Si 1.018 2.982 22 H -0.258 1.258 23 H -0.273 1.273 24 H -0.256 1.256 25 C -0.218 4.218 26 C -0.093 4.093 27 N -0.558 5.558 28 H 0.089 0.911 29 H 0.108 0.892 30 H 0.063 0.937 31 H 0.171 0.829 32 H 0.103 0.897 33 H 0.057 0.943 34 H 0.098 0.902 35 H 0.416 0.584 36 H 0.414 0.586 37 H 0.417 0.583 38 H 0.136 0.864 39 H 0.115 0.885 40 H 0.272 0.728 41 H 0.129 0.871 42 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.465 25.147 -7.587 27.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.041 3.959 3 C -0.246 4.246 4 C 0.024 3.976 5 C -0.174 4.174 6 C -0.284 4.284 7 C 0.367 3.633 8 N -0.387 5.387 9 O -0.458 6.458 10 C 0.183 3.817 11 N -0.269 5.269 12 C -0.015 4.015 13 C -0.081 4.081 14 C -0.202 4.202 15 C 0.055 3.945 16 O -0.137 6.137 17 C -0.489 4.489 18 H 0.121 0.879 19 C -0.221 4.221 20 N -0.561 5.561 21 Si 0.837 3.163 22 H -0.182 1.182 23 H -0.198 1.198 24 H -0.180 1.180 25 C -0.238 4.238 26 C -0.113 4.113 27 N -0.276 5.276 28 H 0.107 0.893 29 H 0.127 0.873 30 H 0.082 0.918 31 H 0.189 0.811 32 H 0.122 0.878 33 H 0.076 0.924 34 H 0.117 0.883 35 H 0.247 0.753 36 H 0.247 0.753 37 H 0.255 0.745 38 H 0.153 0.847 39 H 0.133 0.867 40 H 0.081 0.919 41 H 0.147 0.853 42 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 8.795 24.081 -6.668 26.490 hybrid contribution 1.007 -0.521 -0.436 1.215 sum 9.802 23.560 -7.105 26.488 Atomic orbital electron populations 1.20883 0.86957 1.04429 1.04113 1.21738 0.97997 0.87336 0.88842 1.21797 0.93346 0.99774 1.09688 1.20373 0.94169 0.93756 0.89260 1.20963 0.99401 0.92545 1.04533 1.19885 0.93481 0.93676 1.21318 1.17951 0.86843 0.74469 0.84068 1.43734 1.11747 1.75291 1.07945 1.90854 1.70613 1.51294 1.33030 1.18274 0.88668 0.84649 0.90145 1.41603 1.08332 1.00943 1.76018 1.17328 0.95845 0.86286 1.02029 1.20693 0.94256 0.96349 0.96816 1.20235 1.02970 0.91316 1.05668 1.19828 0.91657 0.87856 0.95158 1.83956 1.43900 1.14898 1.70984 1.21793 1.10153 0.83913 1.33027 0.87936 1.26580 0.96317 1.01880 0.97315 1.70195 1.18261 1.27457 1.40137 0.84658 0.78173 0.74648 0.78802 1.18217 1.19774 1.18037 1.21040 0.97331 0.99774 1.05625 1.20713 1.00685 0.90966 0.98940 1.67323 1.07081 1.30948 1.22262 0.89258 0.87334 0.91779 0.81141 0.87816 0.92391 0.88300 0.75254 0.75333 0.74518 0.84653 0.86682 0.91902 0.85317 0.83600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.77 10.16 71.23 0.72 -1.05 16 2 C 0.18 3.96 6.78 42.59 0.29 4.25 16 3 C -0.22 -3.71 9.41 22.33 0.21 -3.50 16 4 C 0.03 0.58 5.95 -19.42 -0.12 0.46 16 5 C -0.12 -1.33 9.69 71.24 0.69 -0.64 16 6 C -0.27 -6.27 5.66 -19.87 -0.11 -6.38 16 7 C 0.58 12.63 4.90 86.66 0.42 13.05 16 8 N -0.82 -9.69 8.87 -175.89 -1.56 -11.25 16 9 O -0.58 -17.63 17.94 -4.02 -0.07 -17.70 16 10 C 0.42 11.76 7.23 133.62 0.97 12.73 16 11 N -0.64 -18.86 5.39 -184.78 -1.00 -19.86 16 12 C 0.08 2.84 6.30 38.20 0.24 3.08 16 13 C -0.06 -2.38 8.57 22.38 0.19 -2.19 16 14 C -0.18 -8.31 9.98 22.37 0.22 -8.08 16 15 C 0.11 5.40 6.65 22.59 0.15 5.55 16 16 O -0.23 -14.09 9.76 -23.00 -0.22 -14.31 16 17 C -0.41 -24.18 9.48 67.91 0.64 -23.53 16 18 H 0.10 5.45 5.20 -2.91 -0.02 5.43 16 19 C -0.02 -1.36 5.49 84.82 0.47 -0.89 16 20 N -0.92 -57.22 13.67 21.61 0.30 -56.92 16 21 Si 1.02 43.03 29.55 68.60 2.03 45.06 16 22 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 23 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 24 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 25 C -0.22 -9.61 9.16 22.37 0.20 -9.40 16 26 C -0.09 -3.32 9.95 22.38 0.22 -3.10 16 27 N -0.56 -16.22 6.94 -180.52 -1.25 -17.48 16 28 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 29 H 0.11 1.06 8.07 -2.39 -0.02 1.04 16 30 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.17 1.55 8.06 -2.91 -0.02 1.52 16 32 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.06 0.86 7.19 -2.39 -0.02 0.84 16 34 H 0.10 0.74 8.10 -2.39 -0.02 0.72 16 35 H 0.42 3.06 8.81 -92.71 -0.82 2.24 16 36 H 0.41 3.52 8.93 -92.71 -0.83 2.69 16 37 H 0.42 10.61 7.66 -92.71 -0.71 9.90 16 38 H 0.14 5.07 6.23 -2.91 -0.02 5.05 16 39 H 0.12 5.20 8.06 -2.91 -0.02 5.17 16 40 H 0.27 15.49 8.31 -92.70 -0.77 14.72 16 41 H 0.13 5.62 5.63 -2.91 -0.02 5.60 16 42 H 0.15 4.08 8.06 -2.91 -0.02 4.06 16 Total: -1.00 -81.54 361.53 2.40 -79.14 By element: Atomic # 1 Polarization: 34.19 SS G_CDS: -1.24 Total: 32.95 kcal Atomic # 6 Polarization: -25.05 SS G_CDS: 5.42 Total: -19.64 kcal Atomic # 7 Polarization: -101.99 SS G_CDS: -3.51 Total: -105.51 kcal Atomic # 8 Polarization: -31.71 SS G_CDS: -0.30 Total: -32.01 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -81.54 2.40 -79.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212604920.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.998 kcal (2) G-P(sol) polarization free energy of solvation -81.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds