Wall clock time and date at job start Tue Mar 31 2020 15:27:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.34330 * 126.44300 * 2 1 4 4 N 1.34485 * 107.66981 * 179.76475 * 3 2 1 5 5 C 1.30251 * 108.69711 * 0.41913 * 4 3 2 6 6 C 1.50703 * 125.61767 * 179.83988 * 5 4 3 7 7 N 1.46899 * 109.47107 * 89.69203 * 6 5 4 8 8 C 1.46907 * 110.99769 * 66.04798 * 7 6 5 9 9 C 1.46896 * 111.00152 * 189.99879 * 7 6 5 10 10 C 1.53005 * 109.47355 * 169.99941 * 9 7 6 11 11 C 1.52992 * 109.47032 * 180.02562 * 10 9 7 12 12 N 1.46507 * 109.47051 * 180.02562 * 11 10 9 13 13 C 1.34773 * 120.00043 * 180.02562 * 12 11 10 14 14 O 1.21281 * 120.00270 * 359.97438 * 13 12 11 15 15 C 1.50700 * 120.00184 * 180.02562 * 13 12 11 16 16 S 1.80993 * 109.47490 * 179.97438 * 15 13 12 17 17 C 1.76201 * 100.00166 * 179.97438 * 16 15 13 18 18 H 1.07997 * 119.99823 * 359.97438 * 17 16 15 19 19 C 1.38792 * 120.00116 * 180.02562 * 17 16 15 20 20 N 1.31631 * 119.99978 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00160 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47109 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47351 * 119.99903 * 21 19 17 24 24 H 1.48501 * 109.47070 * 239.99685 * 21 19 17 25 25 O 1.33972 * 108.76183 * 359.57692 * 5 4 3 26 26 H 1.08997 * 109.47295 * 269.97906 * 1 2 3 27 27 H 1.09001 * 109.47136 * 29.98596 * 1 2 3 28 28 H 1.09005 * 109.47082 * 149.97616 * 1 2 3 29 29 H 1.08001 * 126.16650 * 0.02562 * 3 2 1 30 30 H 1.09002 * 109.47152 * 329.69290 * 6 5 4 31 31 H 1.09001 * 109.46980 * 209.69391 * 6 5 4 32 32 H 1.08995 * 109.47407 * 59.99898 * 8 7 6 33 33 H 1.09006 * 109.46770 * 179.97438 * 8 7 6 34 34 H 1.09003 * 109.46848 * 299.99626 * 8 7 6 35 35 H 1.09006 * 109.47466 * 290.00215 * 9 7 6 36 36 H 1.09000 * 109.46995 * 50.00413 * 9 7 6 37 37 H 1.08997 * 109.46895 * 300.00397 * 10 9 7 38 38 H 1.09000 * 109.46684 * 60.00282 * 10 9 7 39 39 H 1.09006 * 109.47540 * 300.00122 * 11 10 9 40 40 H 1.09000 * 109.47243 * 60.00517 * 11 10 9 41 41 H 0.96997 * 119.99324 * 359.97438 * 12 11 10 42 42 H 1.09006 * 109.46626 * 299.99590 * 15 13 12 43 43 H 1.09001 * 109.47286 * 59.98816 * 15 13 12 44 44 H 0.97004 * 120.00110 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3049 1.0806 0.0000 4 7 3.5782 0.6478 0.0053 5 6 3.5765 -0.6547 -0.0006 6 6 4.8004 -1.5339 -0.0010 7 7 5.1985 -1.8198 1.3838 8 6 4.1836 -2.6339 2.0659 9 6 6.5141 -2.4717 1.4295 10 6 7.0055 -2.5279 2.8774 11 6 8.3759 -3.2063 2.9249 12 7 8.8462 -3.2606 4.3114 13 6 10.0392 -3.8188 4.5970 14 8 10.7233 -4.2765 3.7063 15 6 10.5226 -3.8752 6.0232 16 16 12.1440 -4.6776 6.0795 17 6 12.4593 -4.6094 7.8117 18 1 11.7348 -4.1608 8.4751 19 6 13.6391 -5.1314 8.3234 20 7 14.5223 -5.6778 7.5147 21 14 13.9736 -5.0585 10.1598 22 1 12.8330 -4.3991 10.8449 23 1 14.1393 -6.4365 10.6879 24 1 15.2149 -4.2815 10.4063 25 8 2.3074 -1.0839 -0.0003 26 1 -0.3634 -0.0004 1.0276 27 1 -0.3633 0.8901 -0.5136 28 1 -0.3633 -0.8898 -0.5142 29 1 1.9821 2.1113 0.0004 30 1 5.6146 -1.0230 -0.5150 31 1 4.5761 -2.4686 -0.5150 32 1 4.0590 -3.5783 1.5360 33 1 4.5036 -2.8313 3.0890 34 1 3.2353 -2.0966 2.0786 35 1 6.4319 -3.4842 1.0342 36 1 7.2225 -1.9029 0.8273 37 1 7.0877 -1.5154 3.2727 38 1 6.2970 -3.0967 3.4797 39 1 8.2941 -4.2188 2.5294 40 1 9.0842 -2.6371 2.3228 41 1 8.2991 -2.8942 5.0237 42 1 10.6038 -2.8630 6.4196 43 1 9.8144 -4.4451 6.6247 44 1 15.3471 -6.0423 7.8723 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234146241.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:27 Heat of formation + Delta-G solvation = -14.598703 kcal Electronic energy + Delta-G solvation = -23719.562873 eV Core-core repulsion = 19992.999051 eV Total energy + Delta-G solvation = -3726.563821 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.73539 -39.23410 -38.33331 -35.23469 -35.05953 -33.19831 -32.41860 -31.85495 -29.60446 -28.84977 -27.06026 -25.73846 -25.39242 -23.40417 -22.45619 -21.40555 -21.20900 -20.20193 -17.83534 -17.45701 -17.36667 -16.34421 -16.25522 -16.22006 -15.42617 -15.27708 -15.21437 -14.79407 -14.78683 -14.28264 -14.04241 -13.84158 -13.61592 -13.33545 -13.09717 -12.94198 -12.85834 -12.62626 -12.45133 -12.26776 -12.02797 -11.82849 -11.63956 -11.62450 -11.06497 -11.00745 -10.99176 -10.87733 -10.74547 -9.79463 -9.39409 -9.17132 -9.06759 -8.90397 -8.85105 -8.21737 -6.48638 -6.20743 -3.91087 0.97389 2.13782 2.28898 3.02920 3.12355 3.22441 3.27873 3.32114 3.43245 3.64170 3.78745 4.21464 4.27493 4.48236 4.54043 4.57789 4.66372 4.78510 4.84333 4.85830 4.91424 5.04006 5.04803 5.14381 5.14635 5.20861 5.22718 5.36289 5.41531 5.46921 5.57477 5.60898 5.67547 5.86080 5.88653 5.93701 5.99458 6.16019 6.37732 6.44940 6.64590 7.36128 7.61050 7.73186 8.36597 8.63637 9.24797 10.86777 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.038500 B = 0.001468 C = 0.001442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.101561 B =19071.054623 C =19415.703260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.050 4.050 3 C -0.044 4.044 4 N -0.463 5.463 5 C 0.196 3.804 6 C 0.152 3.848 7 N -0.537 5.537 8 C 0.017 3.983 9 C 0.060 3.940 10 C -0.128 4.128 11 C 0.123 3.877 12 N -0.739 5.739 13 C 0.531 3.469 14 O -0.518 6.518 15 C -0.153 4.153 16 S -0.061 6.061 17 C -0.535 4.535 18 H 0.073 0.927 19 C 0.073 3.927 20 N -0.868 5.868 21 Si 0.919 3.081 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.280 1.280 25 O -0.204 6.204 26 H 0.084 0.916 27 H 0.092 0.908 28 H 0.077 0.923 29 H 0.183 0.817 30 H 0.119 0.881 31 H 0.066 0.934 32 H 0.033 0.967 33 H 0.079 0.921 34 H 0.064 0.936 35 H 0.045 0.955 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.067 0.933 41 H 0.398 0.602 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.784 10.658 -15.534 35.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.103 4.103 3 C -0.182 4.182 4 N -0.192 5.192 5 C -0.011 4.011 6 C 0.024 3.976 7 N -0.262 5.262 8 C -0.131 4.131 9 C -0.067 4.067 10 C -0.166 4.166 11 C -0.002 4.002 12 N -0.394 5.394 13 C 0.317 3.683 14 O -0.393 6.393 15 C -0.304 4.304 16 S 0.165 5.835 17 C -0.683 4.683 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.206 1.206 25 O -0.091 6.091 26 H 0.103 0.897 27 H 0.111 0.889 28 H 0.096 0.904 29 H 0.200 0.800 30 H 0.137 0.863 31 H 0.084 0.916 32 H 0.051 0.949 33 H 0.097 0.903 34 H 0.083 0.917 35 H 0.063 0.937 36 H 0.104 0.896 37 H 0.099 0.901 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.232 0.768 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -27.883 10.556 -16.808 34.225 hybrid contribution -1.634 -0.262 2.176 2.734 sum -29.517 10.294 -14.632 34.515 Atomic orbital electron populations 1.20279 0.83969 1.04386 1.03883 1.23493 0.95058 0.84645 1.07095 1.23132 0.87827 1.00413 1.06861 1.70443 1.22884 1.09161 1.16748 1.25970 0.83794 0.90316 1.01024 1.20407 0.89818 0.96200 0.91215 1.61881 1.03269 1.47309 1.13709 1.22539 0.95230 0.95416 0.99918 1.22039 0.89309 0.97709 0.97685 1.21783 0.95954 1.02307 0.96527 1.21179 0.94355 1.00846 0.83842 1.45974 1.21145 1.63343 1.08910 1.20305 0.80214 0.76721 0.91028 1.90700 1.55000 1.45197 1.48376 1.23532 1.06242 1.05666 0.94975 1.85393 1.12035 1.75434 1.10601 1.22914 1.07565 1.45473 0.92364 0.90870 1.24990 0.95018 0.94531 0.99040 1.70031 1.08782 1.36598 1.34897 0.86116 0.78345 0.77976 0.83052 1.19621 1.20578 1.20565 1.84394 1.17983 1.36729 1.69961 0.89718 0.88922 0.90365 0.79996 0.86274 0.91618 0.94888 0.90263 0.91712 0.93695 0.89619 0.90110 0.91126 0.91741 0.91459 0.76797 0.89193 0.89245 0.92247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.22 10.43 36.00 0.38 0.16 16 2 C -0.05 -0.36 7.39 -35.69 -0.26 -0.63 16 3 C -0.04 -0.36 11.80 -17.77 -0.21 -0.57 16 4 N -0.46 -5.00 11.29 -11.10 -0.13 -5.13 16 5 C 0.20 1.84 6.91 -12.95 -0.09 1.75 16 6 C 0.15 1.08 5.59 -4.98 -0.03 1.05 16 7 N -0.54 -4.15 4.75 -244.36 -1.16 -5.31 16 8 C 0.02 0.12 9.17 60.07 0.55 0.67 16 9 C 0.06 0.42 4.96 -3.82 -0.02 0.40 16 10 C -0.13 -1.00 5.26 -26.73 -0.14 -1.14 16 11 C 0.12 1.35 5.67 -4.04 -0.02 1.32 16 12 N -0.74 -9.74 5.56 -60.29 -0.33 -10.07 16 13 C 0.53 9.95 7.85 -10.99 -0.09 9.86 16 14 O -0.52 -11.85 15.86 5.56 0.09 -11.76 16 15 C -0.15 -3.11 6.16 36.01 0.22 -2.89 16 16 S -0.06 -1.67 20.57 -107.50 -2.21 -3.89 16 17 C -0.53 -15.32 9.50 30.94 0.29 -15.02 16 18 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 19 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 20 N -0.87 -26.27 13.22 55.49 0.73 -25.53 16 21 Si 0.92 21.48 29.55 -169.99 -5.02 16.46 16 22 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 25 O -0.20 -1.84 10.16 5.37 0.05 -1.78 16 26 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 27 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 28 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.18 1.00 8.06 -52.49 -0.42 0.58 16 30 H 0.12 0.74 7.93 -51.93 -0.41 0.33 16 31 H 0.07 0.36 8.12 -51.93 -0.42 -0.06 16 32 H 0.03 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.08 0.53 6.30 -51.93 -0.33 0.20 16 34 H 0.06 0.52 6.80 -51.93 -0.35 0.17 16 35 H 0.04 0.29 8.12 -51.93 -0.42 -0.13 16 36 H 0.09 0.56 7.93 -51.93 -0.41 0.14 16 37 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.52 6.47 -51.93 -0.34 0.18 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.40 4.09 8.47 -40.82 -0.35 3.74 16 42 H 0.09 1.68 8.14 -51.91 -0.42 1.26 16 43 H 0.09 1.67 8.14 -51.91 -0.42 1.24 16 44 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 386.08 15.07 5.82 5.82 Total: -1.00 -37.16 386.08 -8.48 -45.64 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -6.80 Total: -1.42 kcal Atomic # 6 Polarization: -3.51 SS G_CDS: 0.49 Total: -3.02 kcal Atomic # 7 Polarization: -45.15 SS G_CDS: -0.89 Total: -46.04 kcal Atomic # 8 Polarization: -13.69 SS G_CDS: 0.14 Total: -13.54 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -37.16 -8.48 -45.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234146241.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.040 kcal (2) G-P(sol) polarization free energy of solvation -37.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds