Wall clock time and date at job start Tue Mar 31 2020 15:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.34330 * 126.44300 * 2 1 4 4 N 1.34485 * 107.66981 * 179.76475 * 3 2 1 5 5 C 1.30251 * 108.69711 * 0.41913 * 4 3 2 6 6 C 1.50703 * 125.61767 * 179.83988 * 5 4 3 7 7 N 1.46899 * 109.47107 * 89.69203 * 6 5 4 8 8 C 1.46907 * 110.99769 * 66.04798 * 7 6 5 9 9 C 1.46896 * 111.00152 * 189.99879 * 7 6 5 10 10 C 1.53005 * 109.47355 * 169.99941 * 9 7 6 11 11 C 1.52992 * 109.47032 * 180.02562 * 10 9 7 12 12 N 1.46507 * 109.47051 * 180.02562 * 11 10 9 13 13 C 1.34773 * 120.00043 * 180.02562 * 12 11 10 14 14 O 1.21281 * 120.00270 * 359.97438 * 13 12 11 15 15 C 1.50700 * 120.00184 * 180.02562 * 13 12 11 16 16 S 1.80993 * 109.47490 * 179.97438 * 15 13 12 17 17 C 1.76201 * 100.00166 * 179.97438 * 16 15 13 18 18 H 1.07997 * 119.99823 * 359.97438 * 17 16 15 19 19 C 1.38792 * 120.00116 * 180.02562 * 17 16 15 20 20 N 1.31631 * 119.99978 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00160 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47109 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47351 * 119.99903 * 21 19 17 24 24 H 1.48501 * 109.47070 * 239.99685 * 21 19 17 25 25 O 1.33972 * 108.76183 * 359.57692 * 5 4 3 26 26 H 1.08997 * 109.47295 * 269.97906 * 1 2 3 27 27 H 1.09001 * 109.47136 * 29.98596 * 1 2 3 28 28 H 1.09005 * 109.47082 * 149.97616 * 1 2 3 29 29 H 1.08001 * 126.16650 * 0.02562 * 3 2 1 30 30 H 1.09002 * 109.47152 * 329.69290 * 6 5 4 31 31 H 1.09001 * 109.46980 * 209.69391 * 6 5 4 32 32 H 1.08995 * 109.47407 * 59.99898 * 8 7 6 33 33 H 1.09006 * 109.46770 * 179.97438 * 8 7 6 34 34 H 1.09003 * 109.46848 * 299.99626 * 8 7 6 35 35 H 1.09006 * 109.47466 * 290.00215 * 9 7 6 36 36 H 1.09000 * 109.46995 * 50.00413 * 9 7 6 37 37 H 1.08997 * 109.46895 * 300.00397 * 10 9 7 38 38 H 1.09000 * 109.46684 * 60.00282 * 10 9 7 39 39 H 1.09006 * 109.47540 * 300.00122 * 11 10 9 40 40 H 1.09000 * 109.47243 * 60.00517 * 11 10 9 41 41 H 0.96997 * 119.99324 * 359.97438 * 12 11 10 42 42 H 1.09006 * 109.46626 * 299.99590 * 15 13 12 43 43 H 1.09001 * 109.47286 * 59.98816 * 15 13 12 44 44 H 0.97004 * 120.00110 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3049 1.0806 0.0000 4 7 3.5782 0.6478 0.0053 5 6 3.5765 -0.6547 -0.0006 6 6 4.8004 -1.5339 -0.0010 7 7 5.1985 -1.8198 1.3838 8 6 4.1836 -2.6339 2.0659 9 6 6.5141 -2.4717 1.4295 10 6 7.0055 -2.5279 2.8774 11 6 8.3759 -3.2063 2.9249 12 7 8.8462 -3.2606 4.3114 13 6 10.0392 -3.8188 4.5970 14 8 10.7233 -4.2765 3.7063 15 6 10.5226 -3.8752 6.0232 16 16 12.1440 -4.6776 6.0795 17 6 12.4593 -4.6094 7.8117 18 1 11.7348 -4.1608 8.4751 19 6 13.6391 -5.1314 8.3234 20 7 14.5223 -5.6778 7.5147 21 14 13.9736 -5.0585 10.1598 22 1 12.8330 -4.3991 10.8449 23 1 14.1393 -6.4365 10.6879 24 1 15.2149 -4.2815 10.4063 25 8 2.3074 -1.0839 -0.0003 26 1 -0.3634 -0.0004 1.0276 27 1 -0.3633 0.8901 -0.5136 28 1 -0.3633 -0.8898 -0.5142 29 1 1.9821 2.1113 0.0004 30 1 5.6146 -1.0230 -0.5150 31 1 4.5761 -2.4686 -0.5150 32 1 4.0590 -3.5783 1.5360 33 1 4.5036 -2.8313 3.0890 34 1 3.2353 -2.0966 2.0786 35 1 6.4319 -3.4842 1.0342 36 1 7.2225 -1.9029 0.8273 37 1 7.0877 -1.5154 3.2727 38 1 6.2970 -3.0967 3.4797 39 1 8.2941 -4.2188 2.5294 40 1 9.0842 -2.6371 2.3228 41 1 8.2991 -2.8942 5.0237 42 1 10.6038 -2.8630 6.4196 43 1 9.8144 -4.4451 6.6247 44 1 15.3471 -6.0423 7.8723 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234146241.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:26 Heat of formation + Delta-G solvation = -44.393810 kcal Electronic energy + Delta-G solvation = -23720.854886 eV Core-core repulsion = 19992.999051 eV Total energy + Delta-G solvation = -3727.855834 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.33847 -40.60488 -38.99769 -36.29810 -35.74656 -34.57932 -33.80074 -32.74541 -30.75656 -29.62224 -27.81586 -27.55445 -26.29864 -24.16634 -23.05787 -22.17759 -21.85238 -21.45754 -19.80529 -18.07357 -18.02085 -17.69991 -17.32712 -17.03097 -16.87502 -16.40984 -16.24113 -15.85238 -15.64569 -15.52794 -15.09315 -14.68404 -14.49052 -14.31776 -13.93624 -13.82601 -13.81505 -13.30056 -13.21256 -13.15275 -13.00486 -12.92721 -12.88678 -12.70428 -12.55126 -12.39511 -12.29277 -11.70101 -11.67142 -11.52534 -11.15235 -10.95227 -10.26440 -10.09061 -9.71964 -9.43423 -8.65896 -8.34217 -6.12179 0.39296 1.28080 1.42020 1.47851 1.57208 1.60632 1.63171 1.70114 2.26415 2.30884 2.87766 3.00133 3.11461 3.33482 3.81525 3.92278 3.95014 4.03193 4.07379 4.12831 4.19303 4.30622 4.32239 4.42910 4.47540 4.52698 4.54147 4.58318 4.66516 4.69490 4.71280 4.81055 4.95938 5.04146 5.15731 5.18172 5.21543 5.32380 5.42897 5.47951 5.83182 5.91465 6.20772 6.53151 6.74762 7.07352 7.26650 8.75329 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.038500 B = 0.001468 C = 0.001442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.101561 B =19071.054623 C =19415.703260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.048 4.048 3 C -0.067 4.067 4 N -0.498 5.498 5 C 0.185 3.815 6 C 0.152 3.848 7 N -0.548 5.548 8 C 0.020 3.980 9 C 0.063 3.937 10 C -0.113 4.113 11 C 0.123 3.877 12 N -0.713 5.713 13 C 0.532 3.468 14 O -0.567 6.567 15 C -0.130 4.130 16 S -0.153 6.153 17 C -0.546 4.546 18 H 0.083 0.917 19 C 0.014 3.986 20 N -0.912 5.912 21 Si 0.999 3.001 22 H -0.257 1.257 23 H -0.274 1.274 24 H -0.274 1.274 25 O -0.214 6.214 26 H 0.096 0.904 27 H 0.114 0.886 28 H 0.084 0.916 29 H 0.203 0.797 30 H 0.125 0.875 31 H 0.082 0.918 32 H 0.040 0.960 33 H 0.084 0.916 34 H 0.052 0.948 35 H 0.053 0.947 36 H 0.089 0.911 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.416 0.584 42 H 0.109 0.891 43 H 0.110 0.890 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.166 11.459 -14.474 37.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.101 4.101 3 C -0.205 4.205 4 N -0.228 5.228 5 C -0.022 4.022 6 C 0.024 3.976 7 N -0.273 5.273 8 C -0.128 4.128 9 C -0.065 4.065 10 C -0.151 4.151 11 C -0.002 4.002 12 N -0.367 5.367 13 C 0.318 3.682 14 O -0.446 6.446 15 C -0.281 4.281 16 S 0.074 5.926 17 C -0.694 4.694 18 H 0.101 0.899 19 C -0.191 4.191 20 N -0.548 5.548 21 Si 0.821 3.179 22 H -0.180 1.180 23 H -0.199 1.199 24 H -0.200 1.200 25 O -0.101 6.101 26 H 0.114 0.886 27 H 0.132 0.868 28 H 0.103 0.897 29 H 0.219 0.781 30 H 0.143 0.857 31 H 0.099 0.901 32 H 0.059 0.941 33 H 0.102 0.898 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.108 0.892 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.253 0.747 42 H 0.128 0.872 43 H 0.128 0.872 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -30.333 11.388 -15.745 36.024 hybrid contribution -1.048 -0.441 1.760 2.095 sum -31.382 10.947 -13.985 36.059 Atomic orbital electron populations 1.20495 0.81086 1.05762 1.05000 1.24257 0.96583 0.83937 1.05293 1.23560 0.87375 1.01807 1.07757 1.70408 1.24407 1.10105 1.17836 1.26337 0.84430 0.90326 1.01120 1.20509 0.89332 0.96648 0.91122 1.61830 1.03559 1.47705 1.14215 1.22506 0.94593 0.95440 1.00249 1.22000 0.89140 0.98297 0.97054 1.21642 0.94020 1.01945 0.97473 1.21312 0.95855 1.00953 0.82041 1.45744 1.19212 1.61075 1.10688 1.20057 0.81405 0.76949 0.89780 1.90689 1.56834 1.47771 1.49259 1.23381 1.01939 1.05963 0.96864 1.85570 1.18103 1.77271 1.11618 1.23246 1.08154 1.45598 0.92403 0.89904 1.26120 0.94605 0.93763 1.04606 1.70191 1.09448 1.37680 1.37490 0.84902 0.78595 0.78283 0.76135 1.18039 1.19909 1.19957 1.84401 1.18165 1.37486 1.70059 0.88559 0.86797 0.89712 0.78052 0.85746 0.90054 0.94138 0.89770 0.92913 0.92841 0.89218 0.90100 0.90024 0.92162 0.92208 0.74671 0.87243 0.87163 0.91994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.29 10.43 71.23 0.74 0.45 16 2 C -0.05 -0.65 7.39 24.79 0.18 -0.47 16 3 C -0.07 -1.08 11.80 83.39 0.98 -0.10 16 4 N -0.50 -10.68 11.29 -303.82 -3.43 -14.11 16 5 C 0.19 3.39 6.91 88.34 0.61 4.00 16 6 C 0.15 2.02 5.59 85.56 0.48 2.50 16 7 N -0.55 -7.65 4.75 -927.01 -4.41 -12.06 16 8 C 0.02 0.25 9.17 127.69 1.17 1.42 16 9 C 0.06 0.75 4.96 86.31 0.43 1.18 16 10 C -0.11 -1.50 5.26 30.59 0.16 -1.34 16 11 C 0.12 2.49 5.67 86.38 0.49 2.98 16 12 N -0.71 -17.37 5.56 -463.05 -2.57 -19.94 16 13 C 0.53 19.52 7.85 87.66 0.69 20.21 16 14 O -0.57 -26.28 15.86 -3.03 -0.05 -26.33 16 15 C -0.13 -5.15 6.16 71.24 0.44 -4.71 16 16 S -0.15 -8.52 20.57 -56.49 -1.16 -9.69 16 17 C -0.55 -31.30 9.50 67.95 0.65 -30.65 16 18 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 19 C 0.01 0.78 5.49 84.86 0.47 1.25 16 20 N -0.91 -56.17 13.22 21.65 0.29 -55.88 16 21 Si 1.00 43.68 29.55 68.60 2.03 45.71 16 22 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 23 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 24 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 25 O -0.21 -3.73 10.16 -3.72 -0.04 -3.76 16 26 H 0.10 0.24 8.14 -2.39 -0.02 0.22 16 27 H 0.11 0.02 8.14 -2.39 -0.02 0.00 16 28 H 0.08 0.29 8.14 -2.38 -0.02 0.27 16 29 H 0.20 2.06 8.06 -2.91 -0.02 2.03 16 30 H 0.12 1.45 7.93 -2.39 -0.02 1.43 16 31 H 0.08 0.79 8.12 -2.39 -0.02 0.77 16 32 H 0.04 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.08 0.95 6.30 -2.38 -0.02 0.94 16 34 H 0.05 0.80 6.80 -2.39 -0.02 0.78 16 35 H 0.05 0.57 8.12 -2.38 -0.02 0.55 16 36 H 0.09 1.02 7.93 -2.39 -0.02 1.00 16 37 H 0.08 1.13 8.14 -2.39 -0.02 1.12 16 38 H 0.08 0.95 6.47 -2.39 -0.02 0.93 16 39 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 40 H 0.06 1.35 8.14 -2.39 -0.02 1.34 16 41 H 0.42 7.28 8.47 -92.71 -0.79 6.49 16 42 H 0.11 3.89 8.14 -2.39 -0.02 3.88 16 43 H 0.11 3.89 8.14 -2.40 -0.02 3.87 16 44 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -82.88 386.08 -1.64 -84.52 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: 0.22 Total: 14.81 kcal Atomic # 6 Polarization: -10.76 SS G_CDS: 7.49 Total: -3.27 kcal Atomic # 7 Polarization: -91.87 SS G_CDS: -10.12 Total: -102.00 kcal Atomic # 8 Polarization: -30.01 SS G_CDS: -0.09 Total: -30.09 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Atomic # 16 Polarization: -8.52 SS G_CDS: -1.16 Total: -9.69 kcal Total: -82.88 -1.64 -84.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234146241.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.124 kcal (2) G-P(sol) polarization free energy of solvation -82.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds