Wall clock time and date at job start Tue Mar 31 2020 15:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35449 * 126.78045 * 2 1 4 4 C 1.41376 * 103.99001 * 180.10007 * 3 2 1 5 5 C 1.50704 * 126.80555 * 179.88758 * 4 3 2 6 6 N 1.46908 * 109.46862 * 94.70484 * 5 4 3 7 7 C 1.46897 * 111.00118 * 293.95553 * 6 5 4 8 8 C 1.46902 * 110.99486 * 170.00391 * 6 5 4 9 9 C 1.53006 * 109.46626 * 190.00122 * 8 6 5 10 10 C 1.52999 * 109.46623 * 179.97438 * 9 8 6 11 11 N 1.46506 * 109.46684 * 179.97438 * 10 9 8 12 12 C 1.34777 * 119.99873 * 179.97438 * 11 10 9 13 13 O 1.21284 * 119.99754 * 0.02562 * 12 11 10 14 14 C 1.50696 * 120.00137 * 180.02562 * 12 11 10 15 15 S 1.81003 * 109.47228 * 180.02562 * 14 12 11 16 16 C 1.76206 * 99.99904 * 180.02562 * 15 14 12 17 17 H 1.07998 * 119.99972 * 0.02562 * 16 15 14 18 18 C 1.38795 * 119.99962 * 179.97438 * 16 15 14 19 19 N 1.31631 * 119.99837 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 120.00138 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.46912 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.46980 * 119.99834 * 20 18 16 23 23 H 1.48502 * 109.46757 * 239.99904 * 20 18 16 24 24 N 1.30175 * 106.39579 * 359.62078 * 4 3 2 25 25 O 1.20926 * 111.60453 * 0.24690 * 24 4 3 26 26 H 1.08995 * 109.47099 * 180.30406 * 1 2 3 27 27 H 1.09006 * 109.46870 * 300.30202 * 1 2 3 28 28 H 1.08995 * 109.46941 * 60.29891 * 1 2 3 29 29 H 1.08003 * 128.00801 * 359.95928 * 3 2 1 30 30 H 1.08998 * 109.46802 * 334.71192 * 5 4 3 31 31 H 1.08991 * 109.47544 * 214.70480 * 5 4 3 32 32 H 1.09000 * 109.47532 * 296.04673 * 7 6 5 33 33 H 1.09001 * 109.47296 * 56.04647 * 7 6 5 34 34 H 1.08997 * 109.47027 * 176.04791 * 7 6 5 35 35 H 1.08993 * 109.47737 * 70.00254 * 8 6 5 36 36 H 1.09000 * 109.47263 * 309.99816 * 8 6 5 37 37 H 1.09000 * 109.47050 * 299.99824 * 9 8 6 38 38 H 1.09001 * 109.46801 * 59.99937 * 9 8 6 39 39 H 1.09000 * 109.47486 * 299.99829 * 10 9 8 40 40 H 1.09001 * 109.47362 * 60.00551 * 10 9 8 41 41 H 0.96999 * 120.00080 * 0.02562 * 11 10 9 42 42 H 1.09000 * 109.46978 * 300.00347 * 14 12 11 43 43 H 1.08996 * 109.47197 * 59.99985 * 14 12 11 44 44 H 0.97010 * 119.99929 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3180 1.0849 0.0000 4 6 3.6214 0.5372 -0.0024 5 6 4.9212 1.2999 -0.0058 6 7 5.4039 1.4508 1.3735 7 6 4.5003 2.3035 2.1572 8 6 6.7756 1.9762 1.3965 9 6 7.3324 1.8860 2.8188 10 6 8.7612 2.4326 2.8427 11 7 9.2941 2.3468 4.2047 12 6 10.5454 2.7733 4.4668 13 8 11.2301 3.2285 3.5752 14 6 11.0939 2.6845 5.8676 15 16 12.7842 3.3313 5.8959 16 6 13.1670 3.1122 7.6019 17 1 12.4334 2.6848 8.2694 18 6 14.4117 3.4879 8.0875 19 7 15.3060 4.0083 7.2738 20 14 14.8179 3.2551 9.8960 21 1 13.6512 2.6555 10.5921 22 1 15.9905 2.3535 10.0278 23 1 15.1346 4.5716 10.5056 24 7 3.4764 -0.7564 0.0047 25 8 2.3095 -1.0737 0.0061 26 1 -0.3633 -1.0276 0.0055 27 1 -0.3633 0.5186 0.8873 28 1 -0.3633 0.5092 -0.8926 29 1 2.0346 2.1270 -0.0006 30 1 4.7633 2.2848 -0.4452 31 1 5.6608 0.7548 -0.5920 32 1 4.4962 3.3099 1.7386 33 1 3.4917 1.8918 2.1233 34 1 4.8426 2.3416 3.1914 35 1 6.7715 3.0171 1.0733 36 1 7.4008 1.3893 0.7237 37 1 6.7071 2.4729 3.4916 38 1 7.3365 0.8450 3.1420 39 1 9.3862 1.8453 2.1699 40 1 8.7575 3.4735 2.5193 41 1 8.7466 1.9823 4.9176 42 1 10.4690 3.2720 6.5403 43 1 11.0973 1.6437 6.1911 44 1 16.1759 4.2713 7.6134 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234146393.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:52 Heat of formation + Delta-G solvation = 21.424065 kcal Electronic energy + Delta-G solvation = -23707.058181 eV Core-core repulsion = 19982.056424 eV Total energy + Delta-G solvation = -3725.001757 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -45.31703 -39.23365 -38.41135 -35.43105 -34.37083 -33.68415 -32.41843 -31.68371 -29.20320 -28.33877 -28.24375 -26.38436 -25.45022 -23.66525 -23.07664 -21.36888 -20.23880 -20.19116 -18.06409 -17.81933 -17.59244 -16.43339 -16.26552 -16.23756 -15.49452 -15.27624 -15.25507 -14.79459 -14.46277 -14.36514 -14.11755 -13.85478 -13.81659 -13.21436 -13.09759 -13.01792 -12.79383 -12.59329 -12.45012 -12.25412 -11.88515 -11.83039 -11.65194 -11.38847 -11.06516 -11.00749 -10.99027 -10.74679 -10.57012 -9.79463 -9.73936 -9.38894 -9.06776 -8.87860 -8.82262 -8.21762 -6.48679 -6.20763 -3.91118 1.05892 1.75120 2.69161 3.03258 3.12499 3.22409 3.28303 3.32643 3.48038 3.74221 3.79491 4.02457 4.21431 4.56519 4.57122 4.63369 4.66365 4.81421 4.82283 4.82533 4.93803 5.00832 5.09047 5.12510 5.14542 5.22826 5.23642 5.26670 5.37565 5.39214 5.49395 5.58110 5.60378 5.68447 5.87182 5.94375 6.00667 6.16015 6.49125 6.54317 6.65620 7.61011 7.73553 7.91046 8.36574 8.63841 9.24752 10.86752 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.038601 B = 0.001462 C = 0.001436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.193139 B =19152.757446 C =19496.354030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.034 4.034 3 C -0.234 4.234 4 C 0.028 3.972 5 C 0.132 3.868 6 N -0.537 5.537 7 C 0.018 3.982 8 C 0.060 3.940 9 C -0.127 4.127 10 C 0.123 3.877 11 N -0.739 5.739 12 C 0.531 3.469 13 O -0.519 6.519 14 C -0.153 4.153 15 S -0.061 6.061 16 C -0.535 4.535 17 H 0.073 0.927 18 C 0.073 3.927 19 N -0.868 5.868 20 Si 0.919 3.081 21 H -0.272 1.272 22 H -0.280 1.280 23 H -0.280 1.280 24 N -0.347 5.347 25 O 0.100 5.900 26 H 0.083 0.917 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.168 0.832 30 H 0.060 0.940 31 H 0.094 0.906 32 H 0.029 0.971 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.042 0.958 36 H 0.082 0.918 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.398 0.602 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.486 -5.706 -14.903 36.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.097 4.097 3 C -0.256 4.256 4 C -0.132 4.132 5 C 0.003 3.997 6 N -0.261 5.261 7 C -0.130 4.130 8 C -0.068 4.068 9 C -0.165 4.165 10 C -0.002 4.002 11 N -0.394 5.394 12 C 0.317 3.683 13 O -0.393 6.393 14 C -0.304 4.304 15 S 0.165 5.835 16 C -0.683 4.683 17 H 0.091 0.909 18 C -0.136 4.136 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.196 1.196 22 H -0.206 1.206 23 H -0.206 1.206 24 N -0.050 5.050 25 O 0.032 5.968 26 H 0.102 0.898 27 H 0.109 0.891 28 H 0.108 0.892 29 H 0.186 0.814 30 H 0.078 0.922 31 H 0.112 0.888 32 H 0.048 0.952 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.060 0.940 36 H 0.100 0.900 37 H 0.088 0.912 38 H 0.097 0.903 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.232 0.768 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -30.282 -6.362 -16.214 34.934 hybrid contribution -1.177 0.770 2.187 2.600 sum -31.459 -5.593 -14.027 34.895 Atomic orbital electron populations 1.20348 0.84039 1.04782 1.04099 1.24516 0.96425 0.86239 1.02524 1.22404 0.91481 1.00937 1.10753 1.23319 0.96689 0.90050 1.03133 1.20327 0.91022 0.97656 0.90656 1.61879 1.02507 1.50584 1.11166 1.22507 0.97126 0.94481 0.98855 1.22037 0.88449 0.98617 0.97737 1.21774 0.95089 1.02798 0.96847 1.21181 0.93246 1.01297 0.84485 1.45979 1.15903 1.66748 1.10730 1.20310 0.80645 0.76667 0.90665 1.90700 1.57767 1.43558 1.47269 1.23530 1.06061 1.05464 0.95345 1.85397 1.04120 1.80950 1.13010 1.22916 1.02870 1.48430 0.94097 0.90869 1.24992 0.95163 0.94544 0.98885 1.70034 1.05909 1.39370 1.34999 0.86115 0.78440 0.78036 0.82891 1.19618 1.20558 1.20576 1.73880 0.96552 1.16383 1.18167 1.84872 1.11399 1.33230 1.67272 0.89817 0.89145 0.89169 0.81398 0.92215 0.88773 0.95197 0.91455 0.90688 0.93959 0.90005 0.91173 0.90262 0.91539 0.91773 0.76806 0.89241 0.89195 0.92248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.15 10.45 36.01 0.38 0.23 16 2 C -0.03 -0.20 7.49 -35.30 -0.26 -0.47 16 3 C -0.23 -1.49 10.00 -39.38 -0.39 -1.88 16 4 C 0.03 0.24 6.02 -82.10 -0.49 -0.25 16 5 C 0.13 0.99 5.56 -4.97 -0.03 0.97 16 6 N -0.54 -4.39 4.75 -244.37 -1.16 -5.55 16 7 C 0.02 0.13 9.14 60.06 0.55 0.68 16 8 C 0.06 0.46 4.96 -3.82 -0.02 0.44 16 9 C -0.13 -1.07 5.25 -26.73 -0.14 -1.21 16 10 C 0.12 1.41 5.67 -4.04 -0.02 1.39 16 11 N -0.74 -10.00 5.56 -60.29 -0.33 -10.33 16 12 C 0.53 10.09 7.85 -10.99 -0.09 10.00 16 13 O -0.52 -11.99 15.86 5.55 0.09 -11.91 16 14 C -0.15 -3.14 6.16 36.00 0.22 -2.91 16 15 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 16 C -0.53 -15.38 9.50 30.94 0.29 -15.08 16 17 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 18 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 19 N -0.87 -26.34 13.22 55.49 0.73 -25.61 16 20 Si 0.92 21.54 29.55 -169.99 -5.02 16.52 16 21 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 N -0.35 -3.74 12.07 33.42 0.40 -3.33 16 25 O 0.10 0.91 11.20 17.15 0.19 1.11 16 26 H 0.08 0.11 8.14 -51.93 -0.42 -0.31 16 27 H 0.09 0.08 8.14 -51.93 -0.42 -0.34 16 28 H 0.09 0.06 8.14 -51.93 -0.42 -0.36 16 29 H 0.17 0.66 8.06 -52.48 -0.42 0.24 16 30 H 0.06 0.35 8.12 -51.93 -0.42 -0.07 16 31 H 0.09 0.72 7.93 -51.93 -0.41 0.30 16 32 H 0.03 0.18 8.14 -51.93 -0.42 -0.24 16 33 H 0.07 0.47 6.35 -51.93 -0.33 0.15 16 34 H 0.07 0.52 6.47 -51.93 -0.34 0.18 16 35 H 0.04 0.31 8.12 -51.93 -0.42 -0.12 16 36 H 0.08 0.63 7.93 -51.93 -0.41 0.21 16 37 H 0.07 0.55 6.55 -51.93 -0.34 0.21 16 38 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.40 4.22 8.47 -40.82 -0.35 3.87 16 42 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 43 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 44 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 385.04 15.07 5.80 5.80 Total: -1.00 -36.69 385.04 -8.41 -45.09 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -6.79 Total: -1.79 kcal Atomic # 6 Polarization: -5.99 SS G_CDS: -0.10 Total: -6.09 kcal Atomic # 7 Polarization: -44.47 SS G_CDS: -0.36 Total: -44.83 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.28 Total: -10.80 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -36.69 -8.41 -45.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234146393.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.516 kcal (2) G-P(sol) polarization free energy of solvation -36.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds