Wall clock time and date at job start Tue Mar 31 2020 15:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30174 * 126.80448 * 2 1 4 4 O 1.20918 * 111.60837 * 179.73357 * 3 2 1 5 5 C 1.34044 * 111.56370 * 359.97438 * 4 3 2 6 6 C 1.35446 * 106.44743 * 359.97438 * 5 4 3 7 7 C 1.50704 * 128.00505 * 180.02562 * 6 5 4 8 8 N 1.46901 * 109.46987 * 259.97654 * 7 6 5 9 9 C 1.46902 * 110.99938 * 293.95081 * 8 7 6 10 10 C 1.46894 * 110.99975 * 170.00396 * 8 7 6 11 11 C 1.53002 * 109.47360 * 189.99803 * 10 8 7 12 12 C 1.53001 * 109.47396 * 179.97438 * 11 10 8 13 13 N 1.46508 * 109.46979 * 179.97438 * 12 11 10 14 14 C 1.34773 * 119.99625 * 179.97438 * 13 12 11 15 15 O 1.21286 * 120.00440 * 0.02562 * 14 13 12 16 16 C 1.50697 * 119.99682 * 179.97438 * 14 13 12 17 17 S 1.81003 * 109.47188 * 180.02562 * 16 14 13 18 18 C 1.76195 * 100.00066 * 180.02562 * 17 16 14 19 19 H 1.07998 * 120.00235 * 359.97438 * 18 17 16 20 20 C 1.38806 * 120.00014 * 180.02562 * 18 17 16 21 21 N 1.31633 * 120.00223 * 180.02562 * 20 18 17 22 22 Si 1.86799 * 120.00034 * 359.97438 * 20 18 17 23 23 H 1.48497 * 109.46767 * 90.00158 * 22 20 18 24 24 H 1.48496 * 109.47432 * 210.00252 * 22 20 18 25 25 H 1.48507 * 109.47326 * 330.00616 * 22 20 18 26 26 H 1.09006 * 109.46991 * 90.03020 * 1 2 3 27 27 H 1.08999 * 109.47361 * 210.02423 * 1 2 3 28 28 H 1.08995 * 109.47063 * 330.03017 * 1 2 3 29 29 H 1.08004 * 126.77350 * 180.02562 * 5 4 3 30 30 H 1.08999 * 109.47083 * 19.97348 * 7 6 5 31 31 H 1.09007 * 109.47121 * 139.97728 * 7 6 5 32 32 H 1.09006 * 109.46597 * 60.00185 * 9 8 7 33 33 H 1.09000 * 109.47594 * 179.97438 * 9 8 7 34 34 H 1.09000 * 109.47626 * 300.00615 * 9 8 7 35 35 H 1.09006 * 109.47237 * 309.99406 * 10 8 7 36 36 H 1.09001 * 109.47800 * 69.99686 * 10 8 7 37 37 H 1.09001 * 109.47304 * 300.00131 * 11 10 8 38 38 H 1.09006 * 109.47204 * 59.99125 * 11 10 8 39 39 H 1.08998 * 109.46786 * 299.99779 * 12 11 10 40 40 H 1.08994 * 109.47253 * 59.99856 * 12 11 10 41 41 H 0.97004 * 119.99767 * 0.02562 * 13 12 11 42 42 H 1.09002 * 109.47732 * 300.00218 * 16 14 13 43 43 H 1.09004 * 109.47502 * 60.00708 * 16 14 13 44 44 H 0.97000 * 120.00086 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4538 0.7253 0.0052 5 6 3.6024 -0.6068 0.0100 6 6 2.3539 -1.1320 0.0078 7 6 1.9590 -2.5864 0.0119 8 7 1.6027 -3.0008 -1.3517 9 6 0.3901 -2.3107 -1.8116 10 6 1.4418 -4.4586 -1.4338 11 6 1.3194 -4.8765 -2.9005 12 6 1.1525 -6.3950 -2.9860 13 7 1.0346 -6.7949 -4.3905 14 6 0.8791 -8.0950 -4.7101 15 8 0.8362 -8.9337 -3.8350 16 6 0.7573 -8.5063 -6.1547 17 16 0.5600 -10.3027 -6.2559 18 6 0.4456 -10.5000 -8.0030 19 1 0.5029 -9.6364 -8.6489 20 6 0.2806 -11.7654 -8.5493 21 7 0.1957 -11.9129 -9.8545 22 14 0.1807 -13.2592 -7.4321 23 1 -1.2358 -13.5061 -7.0614 24 1 0.7205 -14.4460 -8.1430 25 1 0.9781 -13.0129 -6.2037 26 1 -0.3633 -0.0005 -1.0277 27 1 -0.3634 -0.8897 0.5142 28 1 -0.3633 0.8902 0.5133 29 1 4.5339 -1.1535 0.0156 30 1 2.7948 -3.1888 0.3679 31 1 1.1021 -2.7284 0.6704 32 1 0.5609 -1.2342 -1.8069 33 1 0.1489 -2.6355 -2.8238 34 1 -0.4390 -2.5500 -1.1457 35 1 2.3095 -4.9456 -0.9885 36 1 0.5421 -4.7559 -0.8950 37 1 0.4518 -4.3896 -3.3459 38 1 2.2191 -4.5792 -3.4393 39 1 2.0203 -6.8815 -2.5409 40 1 0.2530 -6.6925 -2.4472 41 1 1.0693 -6.1241 -5.0904 42 1 -0.1112 -8.0202 -6.5990 43 1 1.6562 -8.2083 -6.6944 44 1 0.0808 -12.7972 -10.2362 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234146675.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:19:43 Heat of formation + Delta-G solvation = 25.283029 kcal Electronic energy + Delta-G solvation = -24049.712357 eV Core-core repulsion = 20324.877937 eV Total energy + Delta-G solvation = -3724.834420 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.36555 -39.38250 -38.60568 -35.78888 -34.70982 -32.81106 -32.44372 -31.60227 -29.63311 -29.30671 -27.71286 -26.45534 -25.60309 -23.62370 -21.80057 -21.62056 -21.21828 -20.32713 -18.06530 -17.93335 -17.80737 -16.53061 -16.39320 -16.35305 -15.65879 -15.49559 -15.30704 -14.93969 -14.66955 -14.38891 -13.96271 -13.79754 -13.75443 -13.28815 -13.14034 -12.94933 -12.86847 -12.80367 -12.54883 -12.20473 -11.96331 -11.76540 -11.73262 -11.40842 -11.27019 -11.07205 -11.01092 -10.61223 -10.34443 -9.94739 -9.86296 -9.54525 -9.03286 -8.97706 -8.86038 -8.50875 -6.92560 -6.29460 -4.01286 1.06525 1.70567 2.74810 2.82745 2.96610 3.25156 3.32692 3.49143 3.50418 3.68447 3.72700 4.02926 4.32591 4.36144 4.43847 4.54580 4.65103 4.72284 4.77879 4.87679 4.91852 4.96947 5.00815 5.06349 5.09567 5.16757 5.19167 5.27509 5.30145 5.31416 5.33510 5.45832 5.55064 5.66342 5.74172 5.83095 5.90502 6.00877 6.45334 6.48521 6.55054 7.59677 7.83974 7.93560 8.41137 8.47887 9.16689 10.79730 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.040492 B = 0.001559 C = 0.001549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.335710 B =17960.392676 C =18066.084653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.021 3.979 3 N -0.367 5.367 4 O 0.097 5.903 5 C -0.041 4.041 6 C -0.194 4.194 7 C 0.131 3.869 8 N -0.537 5.537 9 C 0.009 3.991 10 C 0.058 3.942 11 C -0.128 4.128 12 C 0.123 3.877 13 N -0.737 5.737 14 C 0.530 3.470 15 O -0.521 6.521 16 C -0.124 4.124 17 S -0.142 6.142 18 C -0.522 4.522 19 H 0.088 0.912 20 C 0.096 3.904 21 N -0.880 5.880 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 H 0.085 0.915 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.217 0.783 30 H 0.090 0.910 31 H 0.050 0.950 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.029 0.971 35 H 0.081 0.919 36 H 0.040 0.960 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.400 0.600 42 H 0.097 0.903 43 H 0.097 0.903 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.652 24.804 21.454 32.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.138 4.138 3 N -0.072 5.072 4 O 0.033 5.967 5 C -0.123 4.123 6 C -0.198 4.198 7 C 0.003 3.997 8 N -0.261 5.261 9 C -0.139 4.139 10 C -0.070 4.070 11 C -0.166 4.166 12 C -0.002 4.002 13 N -0.391 5.391 14 C 0.316 3.684 15 O -0.395 6.395 16 C -0.275 4.275 17 S 0.084 5.916 18 C -0.669 4.669 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.517 5.517 22 Si 0.682 3.318 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.159 1.159 26 H 0.104 0.896 27 H 0.098 0.902 28 H 0.095 0.905 29 H 0.234 0.766 30 H 0.109 0.891 31 H 0.068 0.932 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.048 0.952 35 H 0.099 0.901 36 H 0.059 0.941 37 H 0.089 0.911 38 H 0.098 0.902 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.234 0.766 42 H 0.115 0.885 43 H 0.116 0.884 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.727 24.730 22.456 33.611 hybrid contribution -0.683 -0.521 -0.715 1.117 sum 3.044 24.209 21.741 32.681 Atomic orbital electron populations 1.20381 0.86213 1.03715 1.03511 1.23503 0.98902 0.88538 1.02900 1.73864 0.89486 1.24204 1.19679 1.84831 1.21488 1.23124 1.67289 1.25831 1.00789 0.83432 1.02225 1.21087 0.92386 0.97038 1.09324 1.20260 1.00805 0.88936 0.89677 1.61976 1.35584 1.06208 1.22294 1.22819 0.90111 1.00133 1.00861 1.22032 1.01329 0.86941 0.96707 1.21785 1.03443 0.94561 0.96786 1.21196 1.02126 0.93822 0.83059 1.45942 1.76662 1.08308 1.08233 1.20282 0.75327 0.81760 0.91023 1.90699 1.48239 1.50424 1.50173 1.23282 1.05724 1.03563 0.94928 1.84781 1.96088 0.99415 1.11333 1.22321 1.57862 0.97880 0.88881 0.89378 1.24717 0.93220 0.98525 0.94848 1.69940 1.47462 1.24146 1.10125 0.86731 0.80238 0.82463 0.82395 1.19224 1.19931 1.15925 0.89642 0.90193 0.90532 0.76618 0.89144 0.93186 0.90661 0.90864 0.95225 0.90086 0.94132 0.91131 0.90223 0.91521 0.91764 0.76622 0.88508 0.88425 0.91941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.42 8.71 36.01 0.31 -0.11 16 2 C 0.02 0.16 6.42 -82.10 -0.53 -0.37 16 3 N -0.37 -3.49 12.07 33.42 0.40 -3.09 16 4 O 0.10 0.79 11.20 17.17 0.19 0.98 16 5 C -0.04 -0.23 12.26 29.74 0.36 0.14 16 6 C -0.19 -1.24 5.38 -104.42 -0.56 -1.81 16 7 C 0.13 0.69 5.46 -4.97 -0.03 0.66 16 8 N -0.54 -3.33 4.75 -244.36 -1.16 -4.49 16 9 C 0.01 0.05 8.00 60.07 0.48 0.53 16 10 C 0.06 0.35 4.96 -3.83 -0.02 0.33 16 11 C -0.13 -0.88 5.26 -26.73 -0.14 -1.02 16 12 C 0.12 1.23 5.68 -4.04 -0.02 1.20 16 13 N -0.74 -8.92 5.56 -60.29 -0.33 -9.25 16 14 C 0.53 9.24 7.85 -10.99 -0.09 9.15 16 15 O -0.52 -11.12 15.86 5.55 0.09 -11.03 16 16 C -0.12 -2.37 6.16 36.00 0.22 -2.15 16 17 S -0.14 -3.60 18.55 -107.50 -1.99 -5.59 16 18 C -0.52 -15.00 10.04 30.94 0.31 -14.69 16 19 H 0.09 2.63 8.03 -52.49 -0.42 2.21 16 20 C 0.10 2.79 5.50 -17.43 -0.10 2.69 16 21 N -0.88 -26.49 13.97 55.49 0.78 -25.71 16 22 Si 0.86 21.72 27.74 -169.99 -4.71 17.00 16 23 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.24 -5.95 6.74 56.52 0.38 -5.57 16 26 H 0.09 0.39 6.50 -51.93 -0.34 0.05 16 27 H 0.08 0.32 7.77 -51.93 -0.40 -0.09 16 28 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.22 0.39 8.06 -52.48 -0.42 -0.04 16 30 H 0.09 0.36 7.93 -51.93 -0.41 -0.05 16 31 H 0.05 0.24 7.96 -51.93 -0.41 -0.17 16 32 H 0.07 0.47 4.09 -51.93 -0.21 0.26 16 33 H 0.07 0.43 6.30 -51.93 -0.33 0.11 16 34 H 0.03 0.15 7.94 -51.93 -0.41 -0.26 16 35 H 0.08 0.45 7.93 -51.93 -0.41 0.04 16 36 H 0.04 0.24 8.12 -51.93 -0.42 -0.18 16 37 H 0.07 0.47 6.47 -51.93 -0.34 0.13 16 38 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.40 3.71 8.47 -40.82 -0.35 3.37 16 42 H 0.10 1.71 8.14 -51.91 -0.42 1.29 16 43 H 0.10 1.73 8.14 -51.91 -0.42 1.31 16 44 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 375.06 15.07 5.65 5.65 Total: -1.00 -35.75 375.06 -7.45 -43.21 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: -6.57 Total: -2.25 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: 0.21 Total: -5.43 kcal Atomic # 7 Polarization: -42.23 SS G_CDS: -0.32 Total: -42.54 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: 0.28 Total: -10.05 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.71 Total: 17.00 kcal Atomic # 16 Polarization: -3.60 SS G_CDS: -1.99 Total: -5.59 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.75 -7.45 -43.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234146675.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.492 kcal (2) G-P(sol) polarization free energy of solvation -35.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds