Wall clock time and date at job start Tue Mar 31 2020 15:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30174 * 126.80448 * 2 1 4 4 O 1.20918 * 111.60837 * 179.73357 * 3 2 1 5 5 C 1.34044 * 111.56370 * 359.97438 * 4 3 2 6 6 C 1.35446 * 106.44743 * 359.97438 * 5 4 3 7 7 C 1.50704 * 128.00505 * 180.02562 * 6 5 4 8 8 N 1.46901 * 109.46987 * 259.97654 * 7 6 5 9 9 C 1.46902 * 110.99938 * 293.95081 * 8 7 6 10 10 C 1.46894 * 110.99975 * 170.00396 * 8 7 6 11 11 C 1.53002 * 109.47360 * 189.99803 * 10 8 7 12 12 C 1.53001 * 109.47396 * 179.97438 * 11 10 8 13 13 N 1.46508 * 109.46979 * 179.97438 * 12 11 10 14 14 C 1.34773 * 119.99625 * 179.97438 * 13 12 11 15 15 O 1.21286 * 120.00440 * 0.02562 * 14 13 12 16 16 C 1.50697 * 119.99682 * 179.97438 * 14 13 12 17 17 S 1.81003 * 109.47188 * 180.02562 * 16 14 13 18 18 C 1.76195 * 100.00066 * 180.02562 * 17 16 14 19 19 H 1.07998 * 120.00235 * 359.97438 * 18 17 16 20 20 C 1.38806 * 120.00014 * 180.02562 * 18 17 16 21 21 N 1.31633 * 120.00223 * 180.02562 * 20 18 17 22 22 Si 1.86799 * 120.00034 * 359.97438 * 20 18 17 23 23 H 1.48497 * 109.46767 * 90.00158 * 22 20 18 24 24 H 1.48496 * 109.47432 * 210.00252 * 22 20 18 25 25 H 1.48507 * 109.47326 * 330.00616 * 22 20 18 26 26 H 1.09006 * 109.46991 * 90.03020 * 1 2 3 27 27 H 1.08999 * 109.47361 * 210.02423 * 1 2 3 28 28 H 1.08995 * 109.47063 * 330.03017 * 1 2 3 29 29 H 1.08004 * 126.77350 * 180.02562 * 5 4 3 30 30 H 1.08999 * 109.47083 * 19.97348 * 7 6 5 31 31 H 1.09007 * 109.47121 * 139.97728 * 7 6 5 32 32 H 1.09006 * 109.46597 * 60.00185 * 9 8 7 33 33 H 1.09000 * 109.47594 * 179.97438 * 9 8 7 34 34 H 1.09000 * 109.47626 * 300.00615 * 9 8 7 35 35 H 1.09006 * 109.47237 * 309.99406 * 10 8 7 36 36 H 1.09001 * 109.47800 * 69.99686 * 10 8 7 37 37 H 1.09001 * 109.47304 * 300.00131 * 11 10 8 38 38 H 1.09006 * 109.47204 * 59.99125 * 11 10 8 39 39 H 1.08998 * 109.46786 * 299.99779 * 12 11 10 40 40 H 1.08994 * 109.47253 * 59.99856 * 12 11 10 41 41 H 0.97004 * 119.99767 * 0.02562 * 13 12 11 42 42 H 1.09002 * 109.47732 * 300.00218 * 16 14 13 43 43 H 1.09004 * 109.47502 * 60.00708 * 16 14 13 44 44 H 0.97000 * 120.00086 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4538 0.7253 0.0052 5 6 3.6024 -0.6068 0.0100 6 6 2.3539 -1.1320 0.0078 7 6 1.9590 -2.5864 0.0119 8 7 1.6027 -3.0008 -1.3517 9 6 0.3901 -2.3107 -1.8116 10 6 1.4418 -4.4586 -1.4338 11 6 1.3194 -4.8765 -2.9005 12 6 1.1525 -6.3950 -2.9860 13 7 1.0346 -6.7949 -4.3905 14 6 0.8791 -8.0950 -4.7101 15 8 0.8362 -8.9337 -3.8350 16 6 0.7573 -8.5063 -6.1547 17 16 0.5600 -10.3027 -6.2559 18 6 0.4456 -10.5000 -8.0030 19 1 0.5029 -9.6364 -8.6489 20 6 0.2806 -11.7654 -8.5493 21 7 0.1957 -11.9129 -9.8545 22 14 0.1807 -13.2592 -7.4321 23 1 -1.2358 -13.5061 -7.0614 24 1 0.7205 -14.4460 -8.1430 25 1 0.9781 -13.0129 -6.2037 26 1 -0.3633 -0.0005 -1.0277 27 1 -0.3634 -0.8897 0.5142 28 1 -0.3633 0.8902 0.5133 29 1 4.5339 -1.1535 0.0156 30 1 2.7948 -3.1888 0.3679 31 1 1.1021 -2.7284 0.6704 32 1 0.5609 -1.2342 -1.8069 33 1 0.1489 -2.6355 -2.8238 34 1 -0.4390 -2.5500 -1.1457 35 1 2.3095 -4.9456 -0.9885 36 1 0.5421 -4.7559 -0.8950 37 1 0.4518 -4.3896 -3.3459 38 1 2.2191 -4.5792 -3.4393 39 1 2.0203 -6.8815 -2.5409 40 1 0.2530 -6.6925 -2.4472 41 1 1.0693 -6.1241 -5.0904 42 1 -0.1112 -8.0202 -6.5990 43 1 1.6562 -8.2083 -6.6944 44 1 0.0808 -12.7972 -10.2362 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234146675.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:19:42 Heat of formation + Delta-G solvation = -1.181388 kcal Electronic energy + Delta-G solvation = -24050.859940 eV Core-core repulsion = 20324.877937 eV Total energy + Delta-G solvation = -3725.982003 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -45.88975 -40.64541 -39.14119 -36.59112 -35.45378 -34.66532 -33.41821 -32.44326 -30.57305 -30.08357 -28.13643 -27.87670 -27.08316 -24.30898 -22.33825 -22.18802 -21.88423 -21.38653 -19.85494 -18.60941 -18.36725 -17.79803 -17.44175 -17.08695 -17.04246 -16.44456 -16.22485 -16.05031 -15.58499 -15.45861 -14.94166 -14.87818 -14.64089 -14.33378 -14.24003 -13.81588 -13.58940 -13.34617 -13.34015 -13.19219 -13.01618 -12.99223 -12.84260 -12.55458 -12.38129 -12.19720 -11.88155 -11.85068 -11.64269 -11.16495 -11.01104 -10.84181 -10.53021 -10.42359 -10.11189 -9.29223 -8.98923 -8.50924 -6.21787 0.60540 1.00182 1.21495 1.32114 1.47728 1.57258 1.58069 2.23324 2.27526 2.43372 2.72418 2.87318 3.04790 3.27345 3.60960 3.86358 3.94495 3.99449 4.06838 4.17722 4.18530 4.24788 4.42664 4.48560 4.49353 4.55730 4.59914 4.62660 4.67257 4.72190 4.79041 4.82493 4.90539 4.95623 5.07226 5.19194 5.23309 5.27183 5.46302 5.71234 6.04351 6.08052 6.12027 6.49108 6.94249 7.21259 7.35009 8.61382 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.040492 B = 0.001559 C = 0.001549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.335710 B =17960.392676 C =18066.084653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.013 3.987 3 N -0.405 5.405 4 O 0.080 5.920 5 C -0.032 4.032 6 C -0.206 4.206 7 C 0.134 3.866 8 N -0.544 5.544 9 C 0.008 3.992 10 C 0.061 3.939 11 C -0.114 4.114 12 C 0.123 3.877 13 N -0.712 5.712 14 C 0.534 3.466 15 O -0.565 6.565 16 C -0.112 4.112 17 S -0.177 6.177 18 C -0.530 4.530 19 H 0.062 0.938 20 C 0.045 3.955 21 N -0.917 5.917 22 Si 0.915 3.085 23 H -0.262 1.262 24 H -0.259 1.259 25 H -0.236 1.236 26 H 0.091 0.909 27 H 0.092 0.908 28 H 0.074 0.926 29 H 0.252 0.748 30 H 0.105 0.895 31 H 0.054 0.946 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.036 0.964 35 H 0.088 0.912 36 H 0.042 0.958 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.062 0.938 40 H 0.058 0.942 41 H 0.417 0.583 42 H 0.113 0.887 43 H 0.114 0.886 44 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.995 25.193 22.810 34.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.146 4.146 3 N -0.114 5.114 4 O 0.019 5.981 5 C -0.114 4.114 6 C -0.210 4.210 7 C 0.006 3.994 8 N -0.268 5.268 9 C -0.139 4.139 10 C -0.067 4.067 11 C -0.152 4.152 12 C -0.001 4.001 13 N -0.366 5.366 14 C 0.319 3.681 15 O -0.443 6.443 16 C -0.263 4.263 17 S 0.050 5.950 18 C -0.678 4.678 19 H 0.080 0.920 20 C -0.160 4.160 21 N -0.555 5.555 22 Si 0.737 3.263 23 H -0.187 1.187 24 H -0.184 1.184 25 H -0.160 1.160 26 H 0.110 0.890 27 H 0.111 0.889 28 H 0.093 0.907 29 H 0.268 0.732 30 H 0.123 0.877 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.055 0.945 35 H 0.106 0.894 36 H 0.061 0.939 37 H 0.095 0.905 38 H 0.100 0.900 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.254 0.746 42 H 0.131 0.869 43 H 0.132 0.868 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.091 25.180 23.801 34.889 hybrid contribution -0.766 -0.468 -1.127 1.441 sum 3.325 24.712 22.674 33.703 Atomic orbital electron populations 1.20462 0.85007 1.04266 1.04053 1.23961 0.99927 0.88723 1.01957 1.73859 0.90183 1.25548 1.21765 1.84784 1.21143 1.24476 1.67694 1.26542 1.02052 0.82542 1.00258 1.21299 0.92463 0.97374 1.09877 1.20306 1.01562 0.88293 0.89240 1.61951 1.35735 1.06125 1.23001 1.22811 0.90337 0.99798 1.00995 1.21985 1.01825 0.87013 0.95916 1.21656 1.03843 0.91953 0.97725 1.21338 1.01676 0.95908 0.81204 1.45749 1.74156 1.06707 1.10002 1.19939 0.75439 0.83099 0.89580 1.90689 1.50820 1.51988 1.50819 1.23284 1.07295 0.98705 0.97036 1.84699 1.96294 1.05614 1.08402 1.22473 1.57359 0.97249 0.90671 0.91956 1.25574 0.92938 1.01330 0.96164 1.70018 1.48533 1.25243 1.11683 0.85859 0.80415 0.79461 0.80587 1.18711 1.18351 1.16032 0.89028 0.88885 0.90714 0.73183 0.87650 0.92760 0.91230 0.90949 0.94531 0.89377 0.93938 0.90475 0.89964 0.91981 0.92316 0.74640 0.86861 0.86808 0.91381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.76 8.71 71.24 0.62 -0.14 16 2 C 0.01 0.19 6.42 43.58 0.28 0.47 16 3 N -0.40 -7.69 12.07 -49.55 -0.60 -8.28 16 4 O 0.08 1.28 11.20 71.60 0.80 2.08 16 5 C -0.03 -0.30 12.26 67.17 0.82 0.52 16 6 C -0.21 -2.29 5.38 -19.74 -0.11 -2.39 16 7 C 0.13 1.07 5.46 85.56 0.47 1.53 16 8 N -0.54 -5.33 4.75 -927.02 -4.41 -9.74 16 9 C 0.01 0.08 8.00 127.69 1.02 1.10 16 10 C 0.06 0.56 4.96 86.31 0.43 0.99 16 11 C -0.11 -1.23 5.26 30.60 0.16 -1.07 16 12 C 0.12 2.15 5.68 86.38 0.49 2.64 16 13 N -0.71 -15.38 5.56 -463.05 -2.57 -17.96 16 14 C 0.53 17.65 7.85 87.66 0.69 18.34 16 15 O -0.56 -23.53 15.86 -3.05 -0.05 -23.58 16 16 C -0.11 -4.12 6.16 71.23 0.44 -3.68 16 17 S -0.18 -8.84 18.55 -56.49 -1.05 -9.89 16 18 C -0.53 -30.69 10.04 67.96 0.68 -30.01 16 19 H 0.06 3.80 8.03 -2.91 -0.02 3.78 16 20 C 0.05 2.65 5.50 84.86 0.47 3.12 16 21 N -0.92 -55.60 13.97 21.65 0.30 -55.30 16 22 Si 0.91 44.74 27.74 68.60 1.90 46.64 16 23 H -0.26 -12.52 7.11 99.48 0.71 -11.81 16 24 H -0.26 -11.88 7.11 99.48 0.71 -11.18 16 25 H -0.24 -11.53 6.74 99.48 0.67 -10.86 16 26 H 0.09 0.74 6.50 -2.38 -0.02 0.72 16 27 H 0.09 0.60 7.77 -2.39 -0.02 0.58 16 28 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.25 0.17 8.06 -2.91 -0.02 0.15 16 30 H 0.11 0.52 7.93 -2.39 -0.02 0.50 16 31 H 0.05 0.40 7.96 -2.38 -0.02 0.38 16 32 H 0.07 0.76 4.09 -2.38 -0.01 0.75 16 33 H 0.07 0.69 6.30 -2.39 -0.02 0.67 16 34 H 0.04 0.29 7.94 -2.39 -0.02 0.28 16 35 H 0.09 0.71 7.93 -2.38 -0.02 0.69 16 36 H 0.04 0.39 8.12 -2.39 -0.02 0.37 16 37 H 0.08 0.78 6.47 -2.39 -0.02 0.76 16 38 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 39 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.42 6.37 8.47 -92.71 -0.79 5.59 16 42 H 0.11 3.80 8.14 -2.39 -0.02 3.78 16 43 H 0.11 3.82 8.14 -2.39 -0.02 3.80 16 44 H 0.28 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -77.99 375.06 0.99 -77.00 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: 0.19 Total: 7.59 kcal Atomic # 6 Polarization: -15.04 SS G_CDS: 6.46 Total: -8.58 kcal Atomic # 7 Polarization: -84.00 SS G_CDS: -7.28 Total: -91.27 kcal Atomic # 8 Polarization: -22.25 SS G_CDS: 0.75 Total: -21.49 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 1.90 Total: 46.64 kcal Atomic # 16 Polarization: -8.84 SS G_CDS: -1.05 Total: -9.89 kcal Total: -77.99 0.99 -77.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234146675.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.823 kcal (2) G-P(sol) polarization free energy of solvation -77.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds