Wall clock time and date at job start Tue Mar 31 2020 15:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.34485 * 126.16042 * 2 1 4 4 C 1.30260 * 108.69814 * 179.97438 * 3 2 1 5 5 O 1.33967 * 108.75886 * 359.97438 * 4 3 2 6 6 C 1.34330 * 126.17007 * 179.97438 * 2 1 3 7 7 C 1.50704 * 126.44088 * 0.02562 * 6 2 1 8 8 N 1.46900 * 109.46697 * 90.00090 * 7 6 2 9 9 C 1.46894 * 111.00546 * 293.95806 * 8 7 6 10 10 C 1.46898 * 110.99880 * 169.99434 * 8 7 6 11 11 C 1.53000 * 109.47289 * 190.00131 * 10 8 7 12 12 C 1.53003 * 109.47206 * 180.02562 * 11 10 8 13 13 N 1.46494 * 109.47077 * 180.02562 * 12 11 10 14 14 C 1.34778 * 120.00152 * 180.02562 * 13 12 11 15 15 O 1.21283 * 119.99804 * 359.97438 * 14 13 12 16 16 C 1.50696 * 120.00383 * 179.97438 * 14 13 12 17 17 S 1.80996 * 109.47415 * 179.97438 * 16 14 13 18 18 C 1.76199 * 100.00389 * 179.97438 * 17 16 14 19 19 H 1.08006 * 119.99764 * 359.97438 * 18 17 16 20 20 C 1.38792 * 120.00181 * 180.02562 * 18 17 16 21 21 N 1.31628 * 120.00413 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99790 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47046 * 90.00149 * 22 20 18 24 24 H 1.48507 * 109.47093 * 209.99369 * 22 20 18 25 25 H 1.48501 * 109.47315 * 329.99748 * 22 20 18 26 26 H 1.09010 * 109.46874 * 90.03209 * 1 2 3 27 27 H 1.09001 * 109.47525 * 210.02227 * 1 2 3 28 28 H 1.08999 * 109.47609 * 330.02940 * 1 2 3 29 29 H 1.07997 * 125.61808 * 179.97438 * 4 3 2 30 30 H 1.08990 * 109.47109 * 210.00053 * 7 6 2 31 31 H 1.09001 * 109.47371 * 330.00567 * 7 6 2 32 32 H 1.08998 * 109.47577 * 59.99258 * 9 8 7 33 33 H 1.09001 * 109.47590 * 179.97438 * 9 8 7 34 34 H 1.09005 * 109.46739 * 299.99872 * 9 8 7 35 35 H 1.08997 * 109.47857 * 310.00682 * 10 8 7 36 36 H 1.09011 * 109.46717 * 70.00620 * 10 8 7 37 37 H 1.08998 * 109.47226 * 300.00457 * 11 10 8 38 38 H 1.08997 * 109.47071 * 60.00395 * 11 10 8 39 39 H 1.08998 * 109.46809 * 299.99988 * 12 11 10 40 40 H 1.08997 * 109.47375 * 59.99856 * 12 11 10 41 41 H 0.96998 * 120.00235 * 359.97438 * 13 12 11 42 42 H 1.09011 * 109.47037 * 299.99711 * 16 14 13 43 43 H 1.08997 * 109.47301 * 59.99513 * 16 14 13 44 44 H 0.97000 * 120.00221 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3005 1.0858 0.0000 4 6 3.5431 0.6949 0.0006 5 8 3.5734 -0.6444 0.0015 6 6 2.2998 -1.0844 0.0005 7 6 1.8494 -2.5226 0.0006 8 7 1.7036 -2.9900 -1.3844 9 6 0.6124 -2.2821 -2.0670 10 6 1.4980 -4.4438 -1.4304 11 6 1.5996 -4.9277 -2.8783 12 6 1.3849 -6.4418 -2.9263 13 7 1.4828 -6.9052 -4.3126 14 6 1.3260 -8.2129 -4.5987 15 8 1.1042 -9.0061 -3.7084 16 6 1.4261 -8.6896 -6.0248 17 16 1.1722 -10.4807 -6.0816 18 6 1.3369 -10.7584 -7.8137 19 1 1.5356 -9.9295 -8.4770 20 6 1.2102 -12.0422 -8.3259 21 7 0.9675 -13.0523 -7.5177 22 14 1.3841 -12.3364 -10.1624 23 1 2.8062 -12.6150 -10.4866 24 1 0.5492 -13.4989 -10.5588 25 1 0.9350 -11.1294 -10.9019 26 1 -0.3633 -0.0006 -1.0278 27 1 -0.3634 -0.8898 0.5142 28 1 -0.3634 0.8902 0.5134 29 1 4.4065 1.3436 0.0003 30 1 2.5898 -3.1351 0.5148 31 1 0.8912 -2.6033 0.5140 32 1 0.8246 -1.2130 -2.0794 33 1 0.5266 -2.6470 -3.0905 34 1 -0.3236 -2.4605 -1.5376 35 1 2.2601 -4.9379 -0.8279 36 1 0.5106 -4.6838 -1.0356 37 1 0.8374 -4.4337 -3.4809 38 1 2.5868 -4.6878 -3.2732 39 1 2.1468 -6.9361 -2.3237 40 1 0.3975 -6.6815 -2.5316 41 1 1.6597 -6.2708 -5.0247 42 1 0.6643 -8.1950 -6.6276 43 1 2.4135 -8.4502 -6.4194 44 1 0.8793 -13.9496 -7.8756 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234154097.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:47 Heat of formation + Delta-G solvation = -44.437287 kcal Electronic energy + Delta-G solvation = -23999.221283 eV Core-core repulsion = 20271.363564 eV Total energy + Delta-G solvation = -3727.857720 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.30964 -40.61149 -39.02903 -36.40498 -36.04158 -34.58058 -33.66495 -32.18468 -30.54181 -29.73589 -27.74715 -27.50369 -26.57899 -24.15253 -22.97065 -22.17966 -21.60951 -21.36129 -19.80585 -18.07726 -17.94364 -17.72785 -17.30686 -17.03523 -16.87360 -16.48157 -16.23020 -15.90402 -15.81628 -15.54324 -15.16866 -14.67837 -14.43338 -14.24479 -14.18518 -13.96674 -13.66386 -13.25193 -13.16013 -13.10390 -12.95033 -12.87795 -12.80769 -12.58558 -12.42303 -12.37878 -11.98451 -11.72220 -11.66522 -11.47712 -11.13830 -10.95714 -10.27150 -10.09859 -9.74787 -9.35180 -8.66199 -8.34166 -6.12311 0.46300 1.27820 1.43023 1.47837 1.58206 1.62470 1.67042 1.86073 2.26417 2.30731 2.95581 3.00010 3.32601 3.33245 3.77901 3.85364 3.91981 3.95641 4.03544 4.14797 4.20077 4.30852 4.34873 4.48158 4.52248 4.57019 4.60664 4.65630 4.69039 4.72239 4.80141 4.81497 5.00369 5.03647 5.14621 5.19137 5.23200 5.42417 5.43117 5.47513 5.92380 5.98192 6.20353 6.52465 6.75229 7.07192 7.26021 8.75052 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.036738 B = 0.001528 C = 0.001513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.969467 B =18321.713950 C =18496.512000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.023 4.023 3 N -0.525 5.525 4 C 0.179 3.821 5 O -0.210 6.210 6 C -0.046 4.046 7 C 0.138 3.862 8 N -0.549 5.549 9 C 0.014 3.986 10 C 0.061 3.939 11 C -0.112 4.112 12 C 0.122 3.878 13 N -0.713 5.713 14 C 0.532 3.468 15 O -0.567 6.567 16 C -0.130 4.130 17 S -0.153 6.153 18 C -0.547 4.547 19 H 0.083 0.917 20 C 0.014 3.986 21 N -0.911 5.911 22 Si 0.999 3.001 23 H -0.268 1.268 24 H -0.278 1.278 25 H -0.258 1.258 26 H 0.082 0.918 27 H 0.088 0.912 28 H 0.073 0.927 29 H 0.288 0.712 30 H 0.100 0.900 31 H 0.088 0.912 32 H 0.062 0.938 33 H 0.077 0.923 34 H 0.044 0.956 35 H 0.085 0.915 36 H 0.051 0.949 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.058 0.942 40 H 0.059 0.941 41 H 0.416 0.584 42 H 0.110 0.890 43 H 0.110 0.890 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.995 30.201 14.521 33.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.143 4.143 3 N -0.254 5.254 4 C -0.047 4.047 5 O -0.096 6.096 6 C -0.099 4.099 7 C 0.011 3.989 8 N -0.274 5.274 9 C -0.134 4.134 10 C -0.066 4.066 11 C -0.151 4.151 12 C -0.002 4.002 13 N -0.367 5.367 14 C 0.318 3.682 15 O -0.446 6.446 16 C -0.282 4.282 17 S 0.075 5.925 18 C -0.695 4.695 19 H 0.101 0.899 20 C -0.191 4.191 21 N -0.548 5.548 22 Si 0.820 3.180 23 H -0.193 1.193 24 H -0.203 1.203 25 H -0.182 1.182 26 H 0.101 0.899 27 H 0.106 0.894 28 H 0.092 0.908 29 H 0.303 0.697 30 H 0.118 0.882 31 H 0.106 0.894 32 H 0.080 0.920 33 H 0.095 0.905 34 H 0.062 0.938 35 H 0.103 0.897 36 H 0.069 0.931 37 H 0.100 0.900 38 H 0.098 0.902 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.253 0.747 42 H 0.128 0.872 43 H 0.128 0.872 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.870 29.430 15.794 33.453 hybrid contribution 0.089 -0.018 -1.759 1.762 sum 1.959 29.412 14.035 32.648 Atomic orbital electron populations 1.20319 0.85336 1.03911 1.03513 1.21898 0.98944 0.87589 1.05873 1.70379 1.02649 1.32606 1.19815 1.28967 0.98162 0.79230 0.98358 1.84454 1.30481 1.25272 1.69440 1.23243 0.80742 0.98016 1.07914 1.20472 1.01724 0.86217 0.90494 1.61861 1.45694 1.05186 1.14644 1.22657 0.91765 0.99051 0.99882 1.21992 1.01579 0.86294 0.96758 1.21644 1.03938 0.91839 0.97634 1.21315 1.01628 0.95222 0.82011 1.45745 1.73173 1.07089 1.10710 1.20059 0.75528 0.82822 0.89767 1.90690 1.49166 1.55447 1.49292 1.23381 1.06706 1.01208 0.96864 1.85567 1.94115 1.01255 1.11606 1.23215 1.56730 0.97139 0.92422 0.89885 1.26123 0.93795 0.94578 1.04622 1.70182 1.46636 1.00371 1.37567 0.84954 0.78570 0.78309 0.76137 1.19327 1.20294 1.18199 0.89905 0.89353 0.90837 0.69694 0.88158 0.89412 0.91970 0.90457 0.93776 0.89677 0.93079 0.90049 0.90161 0.92332 0.92231 0.74669 0.87166 0.87224 0.91992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.76 9.12 71.23 0.65 -0.11 16 2 C -0.02 -0.37 6.19 41.26 0.26 -0.11 16 3 N -0.52 -9.36 11.30 -304.07 -3.43 -12.79 16 4 C 0.18 2.26 13.23 130.48 1.73 3.98 16 5 O -0.21 -3.40 10.77 -3.68 -0.04 -3.44 16 6 C -0.05 -0.69 6.27 24.79 0.16 -0.53 16 7 C 0.14 1.50 5.30 85.56 0.45 1.96 16 8 N -0.55 -6.58 4.75 -927.06 -4.41 -10.98 16 9 C 0.01 0.15 8.16 127.69 1.04 1.19 16 10 C 0.06 0.68 4.96 86.30 0.43 1.10 16 11 C -0.11 -1.41 5.26 30.60 0.16 -1.25 16 12 C 0.12 2.42 5.67 86.38 0.49 2.91 16 13 N -0.71 -17.01 5.56 -463.07 -2.57 -19.58 16 14 C 0.53 19.30 7.85 87.66 0.69 19.98 16 15 O -0.57 -26.09 15.86 -3.04 -0.05 -26.14 16 16 C -0.13 -5.10 6.16 71.23 0.44 -4.66 16 17 S -0.15 -8.46 20.57 -56.49 -1.16 -9.62 16 18 C -0.55 -31.20 9.50 67.95 0.65 -30.56 16 19 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 20 C 0.01 0.77 5.49 84.86 0.47 1.24 16 21 N -0.91 -55.92 13.22 21.65 0.29 -55.64 16 22 Si 1.00 43.43 29.55 68.60 2.03 45.46 16 23 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 24 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 25 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 26 H 0.08 0.74 6.92 -2.38 -0.02 0.72 16 27 H 0.09 0.58 7.17 -2.39 -0.02 0.57 16 28 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.29 0.55 8.06 -2.91 -0.02 0.53 16 30 H 0.10 0.99 7.93 -2.39 -0.02 0.97 16 31 H 0.09 0.65 7.15 -2.39 -0.02 0.63 16 32 H 0.06 0.78 5.18 -2.39 -0.01 0.76 16 33 H 0.08 0.78 6.30 -2.39 -0.02 0.76 16 34 H 0.04 0.36 8.14 -2.38 -0.02 0.34 16 35 H 0.08 0.91 7.93 -2.39 -0.02 0.89 16 36 H 0.05 0.50 8.12 -2.38 -0.02 0.48 16 37 H 0.08 0.89 6.47 -2.39 -0.02 0.87 16 38 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.42 7.06 8.47 -92.71 -0.79 6.27 16 42 H 0.11 3.85 8.14 -2.39 -0.02 3.83 16 43 H 0.11 3.85 8.14 -2.40 -0.02 3.83 16 44 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -82.62 378.88 -1.52 -84.14 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: 0.23 Total: 13.45 kcal Atomic # 6 Polarization: -12.45 SS G_CDS: 7.60 Total: -4.85 kcal Atomic # 7 Polarization: -88.86 SS G_CDS: -10.13 Total: -98.99 kcal Atomic # 8 Polarization: -29.49 SS G_CDS: -0.09 Total: -29.58 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Atomic # 16 Polarization: -8.46 SS G_CDS: -1.16 Total: -9.62 kcal Total: -82.62 -1.52 -84.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234154097.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.700 kcal (2) G-P(sol) polarization free energy of solvation -82.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds