Wall clock time and date at job start Tue Mar 31 2020 15:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35446 * 128.00505 * 2 1 4 4 O 1.34044 * 106.44743 * 180.02562 * 3 2 1 5 5 N 1.20918 * 111.56370 * 359.97438 * 4 3 2 6 6 C 1.30174 * 111.60837 * 359.97438 * 5 4 3 7 7 C 1.50702 * 126.80448 * 179.73357 * 6 5 4 8 8 N 1.46903 * 109.47012 * 90.03063 * 7 6 5 9 9 C 1.46906 * 110.99664 * 293.95487 * 8 7 6 10 10 C 1.46894 * 111.00451 * 170.00007 * 8 7 6 11 11 C 1.52996 * 109.47380 * 189.99855 * 10 8 7 12 12 C 1.53001 * 109.47124 * 180.02562 * 11 10 8 13 13 N 1.46502 * 109.47115 * 180.02562 * 12 11 10 14 14 C 1.34777 * 119.99581 * 180.02562 * 13 12 11 15 15 O 1.21272 * 120.00533 * 359.97438 * 14 13 12 16 16 C 1.50708 * 119.99541 * 179.97438 * 14 13 12 17 17 S 1.80996 * 109.47009 * 179.97438 * 16 14 13 18 18 C 1.76203 * 99.99957 * 179.97438 * 17 16 14 19 19 H 1.07993 * 119.99837 * 359.97438 * 18 17 16 20 20 C 1.38803 * 119.99925 * 180.02562 * 18 17 16 21 21 N 1.31623 * 119.99568 * 180.02562 * 20 18 17 22 22 Si 1.86799 * 119.99674 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.47012 * 90.00684 * 22 20 18 24 24 H 1.48501 * 109.46747 * 210.00164 * 22 20 18 25 25 H 1.48493 * 109.47626 * 330.00246 * 22 20 18 26 26 H 1.09000 * 109.46935 * 269.97368 * 1 2 3 27 27 H 1.08996 * 109.47443 * 29.97282 * 1 2 3 28 28 H 1.09001 * 109.47282 * 149.97957 * 1 2 3 29 29 H 1.08004 * 126.77907 * 0.02562 * 3 2 1 30 30 H 1.08999 * 109.47361 * 210.02423 * 7 6 5 31 31 H 1.08995 * 109.47063 * 330.03017 * 7 6 5 32 32 H 1.08999 * 109.47129 * 60.00048 * 9 8 7 33 33 H 1.09003 * 109.46651 * 179.97438 * 9 8 7 34 34 H 1.09000 * 109.47108 * 299.99770 * 9 8 7 35 35 H 1.09002 * 109.47195 * 310.00137 * 10 8 7 36 36 H 1.09004 * 109.47146 * 69.99333 * 10 8 7 37 37 H 1.09005 * 109.47206 * 299.99753 * 11 10 8 38 38 H 1.09000 * 109.46945 * 59.99812 * 11 10 8 39 39 H 1.09005 * 109.46810 * 299.99913 * 12 11 10 40 40 H 1.09000 * 109.47430 * 60.00027 * 12 11 10 41 41 H 0.97000 * 119.99818 * 359.97438 * 13 12 11 42 42 H 1.08996 * 109.46756 * 299.99853 * 16 14 13 43 43 H 1.09000 * 109.46999 * 59.99519 * 16 14 13 44 44 H 0.97006 * 119.99389 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3410 1.0673 0.0000 4 8 3.5877 0.5747 -0.0006 5 7 3.5878 -0.6344 -0.0004 6 6 2.3776 -1.1140 0.0008 7 6 1.9827 -2.5683 -0.0042 8 7 1.8574 -3.0465 1.3792 9 6 3.1601 -3.0403 2.0583 10 6 1.2481 -4.3824 1.4214 11 6 0.9057 -4.7414 2.8687 12 6 0.2717 -6.1331 2.9126 13 7 -0.0567 -6.4766 4.2984 14 6 -0.6279 -7.6642 4.5811 15 8 -0.8704 -8.4483 3.6883 16 6 -0.9652 -8.0177 6.0067 17 16 -1.7154 -9.6641 6.0587 18 6 -1.9991 -9.8165 7.7910 19 1 -1.7186 -9.0138 8.4568 20 6 -2.5822 -10.9687 8.3001 21 7 -2.7946 -11.0822 9.5941 22 14 -3.0667 -12.3573 7.1484 23 1 -1.9271 -13.2978 7.0002 24 1 -4.2357 -13.0808 7.7099 25 1 -3.4225 -11.7974 5.8199 26 1 -0.3633 -0.0005 1.0277 27 1 -0.3634 0.8902 -0.5134 28 1 -0.3634 -0.8898 -0.5141 29 1 2.0576 2.1094 0.0004 30 1 1.0275 -2.6837 -0.5163 31 1 2.7453 -3.1500 -0.5220 32 1 3.5569 -2.0252 2.0739 33 1 3.0385 -3.3983 3.0806 34 1 3.8513 -3.6924 1.5244 35 1 0.3382 -4.3859 0.8212 36 1 1.9497 -5.1146 1.0216 37 1 1.8157 -4.7380 3.4689 38 1 0.2041 -4.0092 3.2684 39 1 -0.6382 -6.1369 2.3123 40 1 0.9736 -6.8650 2.5131 41 1 0.1376 -5.8496 5.0126 42 1 -0.0554 -8.0135 6.6070 43 1 -1.6674 -7.2860 6.4061 44 1 -3.2024 -11.8873 9.9498 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234154827.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:17 Heat of formation + Delta-G solvation = 21.855607 kcal Electronic energy + Delta-G solvation = -24001.947233 eV Core-core repulsion = 20276.964190 eV Total energy + Delta-G solvation = -3724.983044 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.35091 -39.36085 -38.47131 -35.71316 -34.80005 -32.84192 -32.43903 -31.67612 -29.35930 -28.61045 -28.27729 -26.42728 -25.59428 -23.51170 -22.02040 -21.49214 -21.22875 -20.31562 -18.05279 -17.90775 -17.78014 -16.46573 -16.37878 -16.32335 -15.62928 -15.37528 -15.25548 -14.92881 -14.69404 -14.26357 -13.85953 -13.74452 -13.70203 -13.28178 -13.13775 -12.96093 -12.79926 -12.68130 -12.41869 -12.28351 -11.96417 -11.93946 -11.70438 -11.47272 -11.26402 -11.05726 -11.00371 -10.60579 -10.43137 -9.85720 -9.77176 -9.53424 -9.02339 -8.96679 -8.87147 -8.50031 -6.91760 -6.28860 -4.00567 1.07278 1.71880 2.75903 2.84953 2.97948 3.24714 3.33305 3.46360 3.50762 3.68358 3.81264 4.02178 4.33290 4.43052 4.52791 4.63154 4.65183 4.73604 4.76485 4.88603 4.99332 5.08857 5.09796 5.10332 5.16808 5.19597 5.24885 5.31032 5.33338 5.35080 5.39247 5.47975 5.62434 5.74306 5.75335 5.84701 5.92100 6.01866 6.44570 6.48524 6.55711 7.61085 7.84507 7.94238 8.41822 8.49197 9.17367 10.80356 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.037534 B = 0.001575 C = 0.001572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.812355 B =17773.002938 C =17810.930489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.184 4.184 3 C -0.070 4.070 4 O 0.100 5.900 5 N -0.361 5.361 6 C 0.027 3.973 7 C 0.132 3.868 8 N -0.535 5.535 9 C 0.020 3.980 10 C 0.059 3.941 11 C -0.127 4.127 12 C 0.123 3.877 13 N -0.737 5.737 14 C 0.530 3.470 15 O -0.521 6.521 16 C -0.124 4.124 17 S -0.142 6.142 18 C -0.522 4.522 19 H 0.088 0.912 20 C 0.096 3.904 21 N -0.880 5.880 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 H 0.077 0.923 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.215 0.785 30 H 0.098 0.902 31 H 0.054 0.946 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.029 0.971 35 H 0.082 0.918 36 H 0.041 0.959 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.067 0.933 40 H 0.064 0.936 41 H 0.400 0.600 42 H 0.097 0.903 43 H 0.097 0.903 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.991 26.256 -20.488 34.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.188 4.188 3 C -0.151 4.151 4 O 0.033 5.967 5 N -0.065 5.065 6 C -0.133 4.133 7 C 0.004 3.996 8 N -0.260 5.260 9 C -0.128 4.128 10 C -0.069 4.069 11 C -0.165 4.165 12 C -0.002 4.002 13 N -0.391 5.391 14 C 0.316 3.684 15 O -0.395 6.395 16 C -0.275 4.275 17 S 0.084 5.916 18 C -0.669 4.669 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.517 5.517 22 Si 0.682 3.318 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.159 1.159 26 H 0.096 0.904 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.232 0.768 30 H 0.116 0.884 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.048 0.952 35 H 0.100 0.900 36 H 0.060 0.940 37 H 0.089 0.911 38 H 0.098 0.902 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.234 0.766 42 H 0.115 0.885 43 H 0.116 0.884 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 10.432 24.593 -21.596 34.352 hybrid contribution -0.107 0.288 0.824 0.880 sum 10.325 24.881 -20.772 34.017 Atomic orbital electron populations 1.20090 0.87184 1.02928 1.03078 1.21316 0.98817 0.91372 1.07278 1.25776 0.83116 1.01208 1.04971 1.84817 1.29180 1.15465 1.67222 1.73860 1.22454 0.91432 1.18740 1.23276 0.88493 0.98168 1.03336 1.20332 1.01702 0.87154 0.90401 1.61915 1.24168 1.25448 1.14442 1.22484 0.88953 1.01997 0.99397 1.22023 0.99471 0.88085 0.97313 1.21780 1.01737 0.96267 0.96749 1.21195 1.00116 0.95255 0.83633 1.45939 1.64824 1.19320 1.09052 1.20281 0.76399 0.80778 0.90938 1.90695 1.51739 1.48898 1.48189 1.23281 1.04890 1.04055 0.95259 1.84783 1.78760 1.15544 1.12536 1.22322 1.47432 1.07536 0.89643 0.89379 1.24714 0.93920 0.97739 0.94936 1.69940 1.41826 1.28434 1.11474 0.86730 0.79291 0.82840 0.82963 1.19223 1.19935 1.15926 0.90423 0.91213 0.90990 0.76843 0.88385 0.92834 0.91442 0.90666 0.95224 0.89989 0.94026 0.91103 0.90173 0.91491 0.91734 0.76624 0.88510 0.88428 0.91949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.32 10.37 36.01 0.37 0.05 16 2 C -0.18 -1.18 6.32 -104.42 -0.66 -1.84 16 3 C -0.07 -0.37 12.26 29.74 0.36 0.00 16 4 O 0.10 0.81 11.20 17.17 0.19 1.00 16 5 N -0.36 -3.48 11.38 33.42 0.38 -3.10 16 6 C 0.03 0.22 5.94 -82.10 -0.49 -0.27 16 7 C 0.13 0.95 5.47 -4.97 -0.03 0.92 16 8 N -0.53 -4.06 4.75 -244.37 -1.16 -5.22 16 9 C 0.02 0.16 9.17 60.07 0.55 0.71 16 10 C 0.06 0.41 4.96 -3.83 -0.02 0.39 16 11 C -0.13 -0.95 5.26 -26.73 -0.14 -1.09 16 12 C 0.12 1.28 5.67 -4.04 -0.02 1.25 16 13 N -0.74 -9.13 5.56 -60.29 -0.33 -9.47 16 14 C 0.53 9.36 7.85 -10.98 -0.09 9.28 16 15 O -0.52 -11.24 15.86 5.56 0.09 -11.15 16 16 C -0.12 -2.39 6.16 36.01 0.22 -2.17 16 17 S -0.14 -3.63 18.55 -107.50 -1.99 -5.62 16 18 C -0.52 -15.06 10.04 30.94 0.31 -14.75 16 19 H 0.09 2.65 8.03 -52.49 -0.42 2.22 16 20 C 0.10 2.80 5.50 -17.43 -0.10 2.70 16 21 N -0.88 -26.57 13.97 55.49 0.78 -25.80 16 22 Si 0.86 21.82 27.74 -169.99 -4.71 17.11 16 23 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.24 -5.98 6.74 56.52 0.38 -5.60 16 26 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 27 H 0.07 0.19 8.14 -51.93 -0.42 -0.24 16 28 H 0.07 0.29 7.65 -51.93 -0.40 -0.11 16 29 H 0.22 0.24 8.06 -52.48 -0.42 -0.19 16 30 H 0.10 0.54 7.44 -51.93 -0.39 0.16 16 31 H 0.05 0.40 8.12 -51.93 -0.42 -0.02 16 32 H 0.07 0.62 6.75 -51.93 -0.35 0.27 16 33 H 0.07 0.55 6.30 -51.93 -0.33 0.23 16 34 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 35 H 0.08 0.50 7.93 -51.93 -0.41 0.09 16 36 H 0.04 0.29 8.12 -51.93 -0.42 -0.13 16 37 H 0.07 0.52 6.47 -51.93 -0.34 0.18 16 38 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.40 3.82 8.47 -40.82 -0.35 3.48 16 42 H 0.10 1.73 8.14 -51.92 -0.42 1.31 16 43 H 0.10 1.74 8.14 -51.92 -0.42 1.32 16 44 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 381.74 15.07 5.75 5.75 Total: -1.00 -35.67 381.74 -7.52 -43.19 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: -6.78 Total: -1.86 kcal Atomic # 6 Polarization: -5.10 SS G_CDS: 0.28 Total: -4.82 kcal Atomic # 7 Polarization: -43.25 SS G_CDS: -0.34 Total: -43.59 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: 0.28 Total: -10.15 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.71 Total: 17.11 kcal Atomic # 16 Polarization: -3.63 SS G_CDS: -1.99 Total: -5.62 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.67 -7.52 -43.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234154827.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.041 kcal (2) G-P(sol) polarization free energy of solvation -35.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds