Wall clock time and date at job start Tue Mar 31 2020 15:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35446 * 128.00505 * 2 1 4 4 O 1.34044 * 106.44743 * 180.02562 * 3 2 1 5 5 N 1.20918 * 111.56370 * 359.97438 * 4 3 2 6 6 C 1.30174 * 111.60837 * 359.97438 * 5 4 3 7 7 C 1.50702 * 126.80448 * 179.73357 * 6 5 4 8 8 N 1.46903 * 109.47012 * 90.03063 * 7 6 5 9 9 C 1.46906 * 110.99664 * 293.95487 * 8 7 6 10 10 C 1.46894 * 111.00451 * 170.00007 * 8 7 6 11 11 C 1.52996 * 109.47380 * 189.99855 * 10 8 7 12 12 C 1.53001 * 109.47124 * 180.02562 * 11 10 8 13 13 N 1.46502 * 109.47115 * 180.02562 * 12 11 10 14 14 C 1.34777 * 119.99581 * 180.02562 * 13 12 11 15 15 O 1.21272 * 120.00533 * 359.97438 * 14 13 12 16 16 C 1.50708 * 119.99541 * 179.97438 * 14 13 12 17 17 S 1.80996 * 109.47009 * 179.97438 * 16 14 13 18 18 C 1.76203 * 99.99957 * 179.97438 * 17 16 14 19 19 H 1.07993 * 119.99837 * 359.97438 * 18 17 16 20 20 C 1.38803 * 119.99925 * 180.02562 * 18 17 16 21 21 N 1.31623 * 119.99568 * 180.02562 * 20 18 17 22 22 Si 1.86799 * 119.99674 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.47012 * 90.00684 * 22 20 18 24 24 H 1.48501 * 109.46747 * 210.00164 * 22 20 18 25 25 H 1.48493 * 109.47626 * 330.00246 * 22 20 18 26 26 H 1.09000 * 109.46935 * 269.97368 * 1 2 3 27 27 H 1.08996 * 109.47443 * 29.97282 * 1 2 3 28 28 H 1.09001 * 109.47282 * 149.97957 * 1 2 3 29 29 H 1.08004 * 126.77907 * 0.02562 * 3 2 1 30 30 H 1.08999 * 109.47361 * 210.02423 * 7 6 5 31 31 H 1.08995 * 109.47063 * 330.03017 * 7 6 5 32 32 H 1.08999 * 109.47129 * 60.00048 * 9 8 7 33 33 H 1.09003 * 109.46651 * 179.97438 * 9 8 7 34 34 H 1.09000 * 109.47108 * 299.99770 * 9 8 7 35 35 H 1.09002 * 109.47195 * 310.00137 * 10 8 7 36 36 H 1.09004 * 109.47146 * 69.99333 * 10 8 7 37 37 H 1.09005 * 109.47206 * 299.99753 * 11 10 8 38 38 H 1.09000 * 109.46945 * 59.99812 * 11 10 8 39 39 H 1.09005 * 109.46810 * 299.99913 * 12 11 10 40 40 H 1.09000 * 109.47430 * 60.00027 * 12 11 10 41 41 H 0.97000 * 119.99818 * 359.97438 * 13 12 11 42 42 H 1.08996 * 109.46756 * 299.99853 * 16 14 13 43 43 H 1.09000 * 109.46999 * 59.99519 * 16 14 13 44 44 H 0.97006 * 119.99389 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3410 1.0673 0.0000 4 8 3.5877 0.5747 -0.0006 5 7 3.5878 -0.6344 -0.0004 6 6 2.3776 -1.1140 0.0008 7 6 1.9827 -2.5683 -0.0042 8 7 1.8574 -3.0465 1.3792 9 6 3.1601 -3.0403 2.0583 10 6 1.2481 -4.3824 1.4214 11 6 0.9057 -4.7414 2.8687 12 6 0.2717 -6.1331 2.9126 13 7 -0.0567 -6.4766 4.2984 14 6 -0.6279 -7.6642 4.5811 15 8 -0.8704 -8.4483 3.6883 16 6 -0.9652 -8.0177 6.0067 17 16 -1.7154 -9.6641 6.0587 18 6 -1.9991 -9.8165 7.7910 19 1 -1.7186 -9.0138 8.4568 20 6 -2.5822 -10.9687 8.3001 21 7 -2.7946 -11.0822 9.5941 22 14 -3.0667 -12.3573 7.1484 23 1 -1.9271 -13.2978 7.0002 24 1 -4.2357 -13.0808 7.7099 25 1 -3.4225 -11.7974 5.8199 26 1 -0.3633 -0.0005 1.0277 27 1 -0.3634 0.8902 -0.5134 28 1 -0.3634 -0.8898 -0.5141 29 1 2.0576 2.1094 0.0004 30 1 1.0275 -2.6837 -0.5163 31 1 2.7453 -3.1500 -0.5220 32 1 3.5569 -2.0252 2.0739 33 1 3.0385 -3.3983 3.0806 34 1 3.8513 -3.6924 1.5244 35 1 0.3382 -4.3859 0.8212 36 1 1.9497 -5.1146 1.0216 37 1 1.8157 -4.7380 3.4689 38 1 0.2041 -4.0092 3.2684 39 1 -0.6382 -6.1369 2.3123 40 1 0.9736 -6.8650 2.5131 41 1 0.1376 -5.8496 5.0126 42 1 -0.0554 -8.0135 6.6070 43 1 -1.6674 -7.2860 6.4061 44 1 -3.2024 -11.8873 9.9498 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234154827.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:16 Heat of formation + Delta-G solvation = -4.265414 kcal Electronic energy + Delta-G solvation = -24003.079926 eV Core-core repulsion = 20276.964190 eV Total energy + Delta-G solvation = -3726.115736 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -45.88824 -40.66113 -39.12989 -36.54727 -35.53880 -34.67046 -33.46402 -32.58076 -30.64825 -29.10425 -28.77648 -27.88449 -27.14861 -24.27224 -22.51620 -22.20137 -21.85547 -21.47575 -19.86032 -18.62011 -18.34212 -17.80809 -17.46311 -17.10026 -17.06576 -16.46514 -16.28528 -16.03876 -15.60213 -15.47200 -14.93773 -14.88685 -14.63111 -14.18871 -14.02863 -13.91518 -13.67163 -13.37156 -13.31263 -13.16326 -13.01960 -12.97386 -12.82335 -12.69126 -12.51341 -12.39879 -11.96854 -11.85916 -11.70844 -11.16910 -11.05031 -10.95796 -10.53417 -10.20699 -10.12683 -9.47029 -8.99370 -8.51294 -6.22142 0.60485 0.99550 1.21669 1.31794 1.47348 1.56687 1.57208 2.21972 2.26620 2.46126 2.71437 2.87006 2.89304 3.28238 3.54983 3.84365 3.92926 3.99877 4.08972 4.11909 4.23540 4.24448 4.31711 4.41819 4.48030 4.49504 4.54277 4.57629 4.68426 4.76302 4.82712 4.89749 4.94003 4.96122 5.05795 5.14446 5.19961 5.41109 5.44031 5.70987 5.86041 5.93750 6.11735 6.48012 6.93929 7.20213 7.34585 8.61041 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.037534 B = 0.001575 C = 0.001572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.812355 B =17773.002938 C =17810.930489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.199 4.199 3 C -0.059 4.059 4 O 0.085 5.915 5 N -0.395 5.395 6 C 0.013 3.987 7 C 0.132 3.868 8 N -0.536 5.536 9 C 0.024 3.976 10 C 0.061 3.939 11 C -0.112 4.112 12 C 0.123 3.877 13 N -0.712 5.712 14 C 0.534 3.466 15 O -0.564 6.564 16 C -0.112 4.112 17 S -0.177 6.177 18 C -0.530 4.530 19 H 0.062 0.938 20 C 0.046 3.954 21 N -0.917 5.917 22 Si 0.915 3.085 23 H -0.263 1.263 24 H -0.259 1.259 25 H -0.237 1.237 26 H 0.075 0.925 27 H 0.088 0.912 28 H 0.072 0.928 29 H 0.255 0.745 30 H 0.115 0.885 31 H 0.046 0.954 32 H 0.052 0.948 33 H 0.082 0.918 34 H 0.024 0.976 35 H 0.093 0.907 36 H 0.040 0.960 37 H 0.076 0.924 38 H 0.086 0.914 39 H 0.064 0.936 40 H 0.057 0.943 41 H 0.417 0.583 42 H 0.113 0.887 43 H 0.115 0.885 44 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.677 27.745 -21.693 36.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.203 4.203 3 C -0.139 4.139 4 O 0.021 5.979 5 N -0.102 5.102 6 C -0.145 4.145 7 C 0.004 3.996 8 N -0.261 5.261 9 C -0.124 4.124 10 C -0.067 4.067 11 C -0.151 4.151 12 C -0.001 4.001 13 N -0.366 5.366 14 C 0.320 3.680 15 O -0.443 6.443 16 C -0.263 4.263 17 S 0.050 5.950 18 C -0.677 4.677 19 H 0.081 0.919 20 C -0.160 4.160 21 N -0.554 5.554 22 Si 0.737 3.263 23 H -0.188 1.188 24 H -0.183 1.183 25 H -0.160 1.160 26 H 0.094 0.906 27 H 0.106 0.894 28 H 0.091 0.909 29 H 0.271 0.729 30 H 0.133 0.867 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.101 0.899 34 H 0.043 0.957 35 H 0.111 0.889 36 H 0.059 0.941 37 H 0.094 0.906 38 H 0.105 0.895 39 H 0.083 0.917 40 H 0.076 0.924 41 H 0.254 0.746 42 H 0.131 0.869 43 H 0.133 0.867 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 10.141 26.145 -22.788 36.134 hybrid contribution 0.064 0.028 1.189 1.191 sum 10.205 26.173 -21.599 35.436 Atomic orbital electron populations 1.20132 0.85643 1.03952 1.03204 1.21661 0.99917 0.90998 1.07718 1.26556 0.81818 1.02762 1.02791 1.84767 1.30632 1.15090 1.67431 1.73855 1.23574 0.92228 1.20498 1.23592 0.88709 0.99059 1.03179 1.20393 1.02284 0.86711 0.90182 1.61908 1.23783 1.25679 1.14710 1.22421 0.89176 1.01015 0.99815 1.22014 0.99910 0.87752 0.97045 1.21641 1.01784 0.94320 0.97313 1.21317 1.00062 0.96738 0.81957 1.45734 1.62472 1.17645 1.10746 1.19948 0.76720 0.81864 0.89514 1.90686 1.54081 1.50633 1.48901 1.23281 1.05467 1.00256 0.97287 1.84705 1.79887 1.20740 1.09707 1.22470 1.47043 1.06909 0.91325 0.91935 1.25567 0.93960 1.00106 0.96355 1.70018 1.42830 1.29545 1.13051 0.85861 0.79534 0.79986 0.80950 1.18757 1.18304 1.16044 0.90626 0.89360 0.90870 0.72930 0.86722 0.93623 0.92875 0.89928 0.95698 0.88870 0.94136 0.90574 0.89507 0.91746 0.92423 0.74607 0.86884 0.86724 0.91376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.46 10.37 71.24 0.74 0.28 16 2 C -0.20 -2.25 6.32 -19.74 -0.12 -2.37 16 3 C -0.06 -0.52 12.26 67.17 0.82 0.31 16 4 O 0.09 1.35 11.20 71.60 0.80 2.15 16 5 N -0.40 -7.64 11.38 -49.55 -0.56 -8.20 16 6 C 0.01 0.21 5.94 43.58 0.26 0.47 16 7 C 0.13 1.78 5.47 85.56 0.47 2.24 16 8 N -0.54 -7.35 4.75 -927.04 -4.41 -11.76 16 9 C 0.02 0.36 9.17 127.69 1.17 1.54 16 10 C 0.06 0.71 4.96 86.30 0.43 1.14 16 11 C -0.11 -1.38 5.26 30.59 0.16 -1.22 16 12 C 0.12 2.29 5.67 86.38 0.49 2.78 16 13 N -0.71 -15.85 5.56 -463.05 -2.57 -18.42 16 14 C 0.53 17.95 7.85 87.66 0.69 18.64 16 15 O -0.56 -23.85 15.86 -3.00 -0.05 -23.90 16 16 C -0.11 -4.15 6.16 71.24 0.44 -3.71 16 17 S -0.18 -8.92 18.55 -56.49 -1.05 -9.97 16 18 C -0.53 -30.83 10.04 67.96 0.68 -30.15 16 19 H 0.06 3.83 8.03 -2.91 -0.02 3.80 16 20 C 0.05 2.67 5.50 84.86 0.47 3.14 16 21 N -0.92 -55.76 13.97 21.65 0.30 -55.45 16 22 Si 0.91 44.98 27.74 68.60 1.90 46.88 16 23 H -0.26 -12.63 7.11 99.48 0.71 -11.92 16 24 H -0.26 -11.91 7.11 99.48 0.71 -11.21 16 25 H -0.24 -11.60 6.74 99.48 0.67 -10.93 16 26 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 27 H 0.09 0.22 8.14 -2.39 -0.02 0.20 16 28 H 0.07 0.44 7.65 -2.39 -0.02 0.42 16 29 H 0.25 -0.24 8.06 -2.91 -0.02 -0.26 16 30 H 0.11 1.09 7.44 -2.39 -0.02 1.07 16 31 H 0.05 0.67 8.12 -2.39 -0.02 0.65 16 32 H 0.05 0.97 6.75 -2.39 -0.02 0.96 16 33 H 0.08 1.09 6.30 -2.39 -0.02 1.08 16 34 H 0.02 0.39 8.14 -2.39 -0.02 0.37 16 35 H 0.09 0.91 7.93 -2.39 -0.02 0.90 16 36 H 0.04 0.50 8.12 -2.39 -0.02 0.48 16 37 H 0.08 0.90 6.47 -2.38 -0.02 0.88 16 38 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 40 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.42 6.61 8.47 -92.71 -0.79 5.83 16 42 H 0.11 3.84 8.14 -2.40 -0.02 3.82 16 43 H 0.11 3.87 8.14 -2.40 -0.02 3.86 16 44 H 0.28 15.56 8.31 -92.70 -0.77 14.79 16 Total: -1.00 -78.10 381.74 1.24 -76.86 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: 0.19 Total: 8.73 kcal Atomic # 6 Polarization: -13.60 SS G_CDS: 6.69 Total: -6.91 kcal Atomic # 7 Polarization: -86.60 SS G_CDS: -7.24 Total: -93.84 kcal Atomic # 8 Polarization: -22.50 SS G_CDS: 0.75 Total: -21.75 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 1.90 Total: 46.88 kcal Atomic # 16 Polarization: -8.92 SS G_CDS: -1.05 Total: -9.97 kcal Total: -78.10 1.24 -76.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234154827.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.595 kcal (2) G-P(sol) polarization free energy of solvation -78.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds