Wall clock time and date at job start Tue Mar 31 2020 15:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.34035 * 126.77238 * 2 1 4 4 N 1.20930 * 111.56439 * 179.97438 * 3 2 1 5 5 C 1.30168 * 111.60248 * 359.74856 * 4 3 2 6 6 C 1.35448 * 126.77637 * 180.02562 * 2 1 3 7 7 C 1.50695 * 128.00848 * 359.96161 * 6 2 1 8 8 N 1.46905 * 109.47316 * 284.70689 * 7 6 2 9 9 C 1.46900 * 111.00367 * 287.77555 * 8 7 6 10 10 C 1.46899 * 111.00030 * 163.81593 * 8 7 6 11 11 C 1.53003 * 109.47259 * 190.00165 * 10 8 7 12 12 C 1.52995 * 109.47292 * 180.02562 * 11 10 8 13 13 N 1.46497 * 109.47112 * 180.02562 * 12 11 10 14 14 C 1.34777 * 119.99854 * 180.02562 * 13 12 11 15 15 O 1.21282 * 120.00233 * 0.02562 * 14 13 12 16 16 C 1.50709 * 119.99792 * 180.02562 * 14 13 12 17 17 S 1.81001 * 109.46971 * 180.02562 * 16 14 13 18 18 C 1.76197 * 99.99982 * 179.97438 * 17 16 14 19 19 H 1.08003 * 120.00147 * 0.02562 * 18 17 16 20 20 C 1.38793 * 120.00051 * 179.97438 * 18 17 16 21 21 N 1.31630 * 120.00231 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00188 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47020 * 60.00070 * 22 20 18 24 24 H 1.48498 * 109.47350 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47314 * 300.00168 * 22 20 18 26 26 H 1.08996 * 109.47043 * 264.40991 * 1 2 3 27 27 H 1.08995 * 109.47096 * 24.41323 * 1 2 3 28 28 H 1.08999 * 109.46865 * 144.41067 * 1 2 3 29 29 H 1.08002 * 126.80390 * 180.24774 * 5 4 3 30 30 H 1.08999 * 109.47332 * 164.71126 * 7 6 2 31 31 H 1.08997 * 109.47755 * 44.70719 * 7 6 2 32 32 H 1.09005 * 109.46809 * 53.84840 * 9 8 7 33 33 H 1.08994 * 109.47391 * 173.85011 * 9 8 7 34 34 H 1.09002 * 109.46907 * 293.85323 * 9 8 7 35 35 H 1.08996 * 109.47458 * 310.00631 * 10 8 7 36 36 H 1.09001 * 109.47059 * 70.00472 * 10 8 7 37 37 H 1.08996 * 109.47266 * 300.00584 * 11 10 8 38 38 H 1.09001 * 109.46834 * 60.00170 * 11 10 8 39 39 H 1.08996 * 109.47436 * 300.00473 * 12 11 10 40 40 H 1.09001 * 109.47048 * 60.00294 * 12 11 10 41 41 H 0.97001 * 120.00186 * 0.02562 * 13 12 11 42 42 H 1.09003 * 109.47151 * 299.99953 * 16 14 13 43 43 H 1.08992 * 109.47335 * 59.99994 * 16 14 13 44 44 H 0.96997 * 120.00094 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.3095 1.0737 0.0000 4 7 3.4764 0.7564 0.0005 5 6 3.6214 -0.5371 0.0062 6 6 2.3180 -1.0849 -0.0005 7 6 1.9225 -2.5390 -0.0003 8 7 1.4554 -2.9194 1.3395 9 6 2.5765 -2.9970 2.2856 10 6 0.7126 -4.1861 1.2982 11 6 0.0336 -4.4235 2.6486 12 6 -0.7394 -5.7431 2.6058 13 7 -1.3900 -5.9700 3.8986 14 6 -2.1312 -7.0785 4.0946 15 8 -2.2591 -7.8884 3.2009 16 6 -2.8010 -7.3117 5.4244 17 16 -3.7142 -8.8737 5.3743 18 6 -4.3763 -8.8935 7.0070 19 1 -4.1624 -8.0816 7.6864 20 6 -5.1737 -9.9519 7.4197 21 7 -5.4349 -10.9411 6.5916 22 14 -5.8763 -9.9725 9.1503 23 1 -6.7348 -8.7774 9.3504 24 1 -6.6878 -11.2016 9.3406 25 1 -4.7656 -9.9547 10.1358 26 1 -0.3633 -0.1001 1.0227 27 1 -0.3633 0.9357 -0.4247 28 1 -0.3633 -0.8357 -0.5981 29 1 4.5528 -1.0838 0.0117 30 1 2.7835 -3.1498 -0.2718 31 1 1.1220 -2.6980 -0.7228 32 1 3.1325 -2.0596 2.2678 33 1 2.1925 -3.1726 3.2904 34 1 3.2364 -3.8164 2.0005 35 1 -0.0436 -4.1385 0.5147 36 1 1.4015 -5.0045 1.0891 37 1 0.7898 -4.4710 3.4322 38 1 -0.6552 -3.6050 2.8577 39 1 -1.4956 -5.6960 1.8222 40 1 -0.0502 -6.5613 2.3969 41 1 -1.2874 -5.3225 4.6135 42 1 -2.0453 -7.3580 6.2087 43 1 -3.4906 -6.4937 5.6323 44 1 -5.9925 -11.6806 6.8799 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234154968.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:56 Heat of formation + Delta-G solvation = 20.901268 kcal Electronic energy + Delta-G solvation = -24011.030834 eV Core-core repulsion = 20286.006406 eV Total energy + Delta-G solvation = -3725.024427 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -45.30065 -39.26323 -38.44394 -35.51220 -34.33172 -33.49827 -32.43263 -31.76401 -29.34077 -28.67931 -27.66711 -26.24332 -25.45630 -23.58932 -22.74757 -21.42728 -20.74864 -20.21870 -18.01365 -17.83613 -17.46748 -16.45063 -16.28759 -16.26026 -15.43771 -15.36768 -15.28648 -14.80607 -14.61075 -14.32311 -13.95338 -13.82098 -13.58186 -13.27784 -13.12802 -12.88640 -12.65702 -12.59948 -12.42255 -12.25881 -11.92611 -11.86395 -11.67615 -11.39693 -11.04915 -11.04860 -11.01493 -10.77178 -10.70702 -9.82896 -9.56862 -9.41354 -9.06724 -8.90618 -8.84317 -8.24497 -6.50474 -6.21808 -3.92573 1.08625 1.80593 2.71390 3.01221 3.09660 3.23271 3.26871 3.29706 3.48784 3.77254 3.88133 4.19185 4.20346 4.39536 4.52621 4.61131 4.72803 4.79460 4.90107 4.99733 5.03597 5.07453 5.12085 5.13243 5.17134 5.20573 5.22240 5.34660 5.37343 5.47297 5.47936 5.57551 5.66188 5.68906 5.83939 5.91365 5.97264 6.13677 6.49867 6.53127 6.63076 7.58951 7.70361 7.87000 8.34719 8.60973 9.23348 10.85555 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.033806 B = 0.001559 C = 0.001542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.055374 B =17952.748328 C =18159.112028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.006 4.006 3 O 0.092 5.908 4 N -0.369 5.369 5 C -0.003 4.003 6 C -0.202 4.202 7 C 0.133 3.867 8 N -0.538 5.538 9 C 0.021 3.979 10 C 0.058 3.942 11 C -0.127 4.127 12 C 0.122 3.878 13 N -0.739 5.739 14 C 0.531 3.469 15 O -0.519 6.519 16 C -0.154 4.154 17 S -0.061 6.061 18 C -0.537 4.537 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 H 0.094 0.906 27 H 0.079 0.921 28 H 0.091 0.909 29 H 0.186 0.814 30 H 0.050 0.950 31 H 0.088 0.912 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.028 0.972 35 H 0.081 0.919 36 H 0.040 0.960 37 H 0.069 0.931 38 H 0.078 0.922 39 H 0.066 0.934 40 H 0.063 0.937 41 H 0.398 0.602 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.090 22.005 -13.118 30.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.070 4.070 3 O 0.028 5.972 4 N -0.073 5.073 5 C -0.182 4.182 6 C -0.206 4.206 7 C 0.005 3.995 8 N -0.262 5.262 9 C -0.127 4.127 10 C -0.070 4.070 11 C -0.165 4.165 12 C -0.002 4.002 13 N -0.394 5.394 14 C 0.317 3.683 15 O -0.393 6.393 16 C -0.304 4.304 17 S 0.166 5.834 18 C -0.685 4.685 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.200 1.200 26 H 0.112 0.888 27 H 0.098 0.902 28 H 0.109 0.891 29 H 0.203 0.797 30 H 0.069 0.931 31 H 0.107 0.893 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.047 0.953 35 H 0.099 0.901 36 H 0.059 0.941 37 H 0.088 0.912 38 H 0.097 0.903 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.232 0.768 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 16.317 21.869 -14.500 30.899 hybrid contribution 0.226 -0.181 2.265 2.284 sum 16.543 21.688 -12.235 29.895 Atomic orbital electron populations 1.20334 0.83683 1.04128 1.04642 1.24356 0.96338 0.85529 1.00785 1.84815 1.11452 1.33308 1.67629 1.73896 0.97257 1.16765 1.19355 1.24917 0.99672 0.90408 1.03234 1.20903 0.91900 0.97063 1.10778 1.20230 0.99735 0.88609 0.90946 1.61931 1.25041 1.31765 1.07418 1.22448 0.92416 1.00828 0.96972 1.22050 0.97292 0.89455 0.98184 1.21768 0.99888 0.97306 0.97517 1.21183 0.96315 0.96472 0.86277 1.45979 1.53283 1.24566 1.15554 1.20313 0.77858 0.80442 0.89658 1.90701 1.60080 1.44160 1.44349 1.23534 1.03211 1.07302 0.96386 1.85390 1.60731 1.18097 1.19181 1.22831 1.36596 1.10368 0.98680 0.90967 1.24987 0.95532 0.94587 0.98445 1.70007 1.35868 1.09109 1.35311 0.86224 0.78949 0.77690 0.82635 1.19939 1.20805 1.19950 0.88756 0.90228 0.89075 0.79677 0.93131 0.89332 0.91657 0.90826 0.95310 0.90102 0.94137 0.91233 0.90289 0.91583 0.91834 0.76811 0.89249 0.89200 0.92127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.28 10.28 36.01 0.37 0.09 16 2 C -0.01 -0.04 7.49 -35.30 -0.26 -0.30 16 3 O 0.09 0.83 11.20 17.19 0.19 1.03 16 4 N -0.37 -3.61 12.07 30.35 0.37 -3.24 16 5 C 0.00 -0.02 11.80 -17.06 -0.20 -0.22 16 6 C -0.20 -1.37 5.02 -104.42 -0.52 -1.89 16 7 C 0.13 0.73 5.39 -4.98 -0.03 0.70 16 8 N -0.54 -3.28 4.71 -244.37 -1.15 -4.43 16 9 C 0.02 0.13 9.13 60.06 0.55 0.68 16 10 C 0.06 0.36 4.95 -3.82 -0.02 0.34 16 11 C -0.13 -0.89 5.25 -26.73 -0.14 -1.03 16 12 C 0.12 1.28 5.67 -4.05 -0.02 1.26 16 13 N -0.74 -9.37 5.56 -60.30 -0.33 -9.70 16 14 C 0.53 9.73 7.85 -10.98 -0.09 9.65 16 15 O -0.52 -11.67 15.86 5.56 0.09 -11.58 16 16 C -0.15 -3.06 6.16 36.01 0.22 -2.84 16 17 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 18 C -0.54 -15.22 9.50 30.94 0.29 -14.93 16 19 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 20 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 21 N -0.87 -26.07 13.22 55.49 0.73 -25.33 16 22 Si 0.92 21.28 29.55 -169.99 -5.02 16.26 16 23 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 25 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 26 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.09 0.28 8.09 -51.93 -0.42 -0.14 16 29 H 0.19 0.94 8.06 -52.49 -0.42 0.52 16 30 H 0.05 0.26 8.05 -51.93 -0.42 -0.16 16 31 H 0.09 0.40 7.75 -51.93 -0.40 0.00 16 32 H 0.06 0.43 7.06 -51.93 -0.37 0.06 16 33 H 0.07 0.45 6.57 -51.93 -0.34 0.11 16 34 H 0.03 0.17 8.12 -51.93 -0.42 -0.25 16 35 H 0.08 0.45 7.86 -51.93 -0.41 0.04 16 36 H 0.04 0.26 8.11 -51.93 -0.42 -0.16 16 37 H 0.07 0.48 6.60 -51.93 -0.34 0.13 16 38 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.40 3.88 8.47 -40.82 -0.35 3.53 16 42 H 0.09 1.64 8.14 -51.91 -0.42 1.22 16 43 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 44 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 385.88 15.07 5.82 5.82 Total: -1.00 -35.54 385.88 -8.29 -43.83 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -6.81 Total: -2.28 kcal Atomic # 6 Polarization: -6.56 SS G_CDS: 0.05 Total: -6.51 kcal Atomic # 7 Polarization: -42.32 SS G_CDS: -0.38 Total: -42.71 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.28 Total: -10.56 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.54 -8.29 -43.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234154968.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.728 kcal (2) G-P(sol) polarization free energy of solvation -35.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds