Wall clock time and date at job start Tue Mar 31 2020 15:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.34035 * 126.77238 * 2 1 4 4 N 1.20930 * 111.56439 * 179.97438 * 3 2 1 5 5 C 1.30168 * 111.60248 * 359.74856 * 4 3 2 6 6 C 1.35448 * 126.77637 * 180.02562 * 2 1 3 7 7 C 1.50695 * 128.00848 * 359.96161 * 6 2 1 8 8 N 1.46905 * 109.47316 * 284.70689 * 7 6 2 9 9 C 1.46900 * 111.00367 * 287.77555 * 8 7 6 10 10 C 1.46899 * 111.00030 * 163.81593 * 8 7 6 11 11 C 1.53003 * 109.47259 * 190.00165 * 10 8 7 12 12 C 1.52995 * 109.47292 * 180.02562 * 11 10 8 13 13 N 1.46497 * 109.47112 * 180.02562 * 12 11 10 14 14 C 1.34777 * 119.99854 * 180.02562 * 13 12 11 15 15 O 1.21282 * 120.00233 * 0.02562 * 14 13 12 16 16 C 1.50709 * 119.99792 * 180.02562 * 14 13 12 17 17 S 1.81001 * 109.46971 * 180.02562 * 16 14 13 18 18 C 1.76197 * 99.99982 * 179.97438 * 17 16 14 19 19 H 1.08003 * 120.00147 * 0.02562 * 18 17 16 20 20 C 1.38793 * 120.00051 * 179.97438 * 18 17 16 21 21 N 1.31630 * 120.00231 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00188 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47020 * 60.00070 * 22 20 18 24 24 H 1.48498 * 109.47350 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47314 * 300.00168 * 22 20 18 26 26 H 1.08996 * 109.47043 * 264.40991 * 1 2 3 27 27 H 1.08995 * 109.47096 * 24.41323 * 1 2 3 28 28 H 1.08999 * 109.46865 * 144.41067 * 1 2 3 29 29 H 1.08002 * 126.80390 * 180.24774 * 5 4 3 30 30 H 1.08999 * 109.47332 * 164.71126 * 7 6 2 31 31 H 1.08997 * 109.47755 * 44.70719 * 7 6 2 32 32 H 1.09005 * 109.46809 * 53.84840 * 9 8 7 33 33 H 1.08994 * 109.47391 * 173.85011 * 9 8 7 34 34 H 1.09002 * 109.46907 * 293.85323 * 9 8 7 35 35 H 1.08996 * 109.47458 * 310.00631 * 10 8 7 36 36 H 1.09001 * 109.47059 * 70.00472 * 10 8 7 37 37 H 1.08996 * 109.47266 * 300.00584 * 11 10 8 38 38 H 1.09001 * 109.46834 * 60.00170 * 11 10 8 39 39 H 1.08996 * 109.47436 * 300.00473 * 12 11 10 40 40 H 1.09001 * 109.47048 * 60.00294 * 12 11 10 41 41 H 0.97001 * 120.00186 * 0.02562 * 13 12 11 42 42 H 1.09003 * 109.47151 * 299.99953 * 16 14 13 43 43 H 1.08992 * 109.47335 * 59.99994 * 16 14 13 44 44 H 0.96997 * 120.00094 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.3095 1.0737 0.0000 4 7 3.4764 0.7564 0.0005 5 6 3.6214 -0.5371 0.0062 6 6 2.3180 -1.0849 -0.0005 7 6 1.9225 -2.5390 -0.0003 8 7 1.4554 -2.9194 1.3395 9 6 2.5765 -2.9970 2.2856 10 6 0.7126 -4.1861 1.2982 11 6 0.0336 -4.4235 2.6486 12 6 -0.7394 -5.7431 2.6058 13 7 -1.3900 -5.9700 3.8986 14 6 -2.1312 -7.0785 4.0946 15 8 -2.2591 -7.8884 3.2009 16 6 -2.8010 -7.3117 5.4244 17 16 -3.7142 -8.8737 5.3743 18 6 -4.3763 -8.8935 7.0070 19 1 -4.1624 -8.0816 7.6864 20 6 -5.1737 -9.9519 7.4197 21 7 -5.4349 -10.9411 6.5916 22 14 -5.8763 -9.9725 9.1503 23 1 -6.7348 -8.7774 9.3504 24 1 -6.6878 -11.2016 9.3406 25 1 -4.7656 -9.9547 10.1358 26 1 -0.3633 -0.1001 1.0227 27 1 -0.3633 0.9357 -0.4247 28 1 -0.3633 -0.8357 -0.5981 29 1 4.5528 -1.0838 0.0117 30 1 2.7835 -3.1498 -0.2718 31 1 1.1220 -2.6980 -0.7228 32 1 3.1325 -2.0596 2.2678 33 1 2.1925 -3.1726 3.2904 34 1 3.2364 -3.8164 2.0005 35 1 -0.0436 -4.1385 0.5147 36 1 1.4015 -5.0045 1.0891 37 1 0.7898 -4.4710 3.4322 38 1 -0.6552 -3.6050 2.8577 39 1 -1.4956 -5.6960 1.8222 40 1 -0.0502 -6.5613 2.3969 41 1 -1.2874 -5.3225 4.6135 42 1 -2.0453 -7.3580 6.2087 43 1 -3.4906 -6.4937 5.6323 44 1 -5.9925 -11.6806 6.8799 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234154968.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:55 Heat of formation + Delta-G solvation = -4.601879 kcal Electronic energy + Delta-G solvation = -24012.136733 eV Core-core repulsion = 20286.006406 eV Total energy + Delta-G solvation = -3726.130327 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -45.87401 -40.59078 -39.02025 -36.44023 -35.05982 -34.57048 -34.02104 -32.71555 -30.59513 -29.21638 -28.14671 -27.68956 -26.86795 -24.29138 -23.30988 -22.15817 -21.52714 -21.19544 -19.79149 -18.60761 -18.01484 -17.72044 -17.38829 -17.00753 -16.86437 -16.32872 -16.25248 -15.96710 -15.63128 -15.40788 -14.93506 -14.67338 -14.42818 -14.29428 -13.91688 -13.80320 -13.67534 -13.24634 -13.15550 -13.07322 -12.91997 -12.84986 -12.78734 -12.61216 -12.44706 -12.35351 -11.93116 -11.72566 -11.62672 -11.28479 -11.11624 -10.93668 -10.26430 -10.07897 -10.07449 -9.31385 -8.65253 -8.33167 -6.11318 0.55453 1.26223 1.29439 1.45049 1.48521 1.58322 1.64199 2.23395 2.27994 2.33026 3.00868 3.03926 3.34398 3.39168 3.73703 3.93098 3.96924 4.00200 4.13694 4.19218 4.23399 4.32592 4.44640 4.51048 4.53632 4.59791 4.63179 4.68531 4.69464 4.79015 4.82130 4.86246 4.96428 5.06532 5.07404 5.21869 5.26992 5.32179 5.42985 5.50241 6.04713 6.08246 6.20961 6.54665 7.08043 7.28069 7.31468 8.75744 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.033806 B = 0.001559 C = 0.001542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.055374 B =17952.748328 C =18159.112028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.008 4.008 3 O 0.073 5.927 4 N -0.403 5.403 5 C -0.004 4.004 6 C -0.206 4.206 7 C 0.135 3.865 8 N -0.540 5.540 9 C 0.023 3.977 10 C 0.061 3.939 11 C -0.111 4.111 12 C 0.122 3.878 13 N -0.713 5.713 14 C 0.532 3.468 15 O -0.568 6.568 16 C -0.130 4.130 17 S -0.153 6.153 18 C -0.548 4.548 19 H 0.083 0.917 20 C 0.014 3.986 21 N -0.911 5.911 22 Si 0.998 3.002 23 H -0.262 1.262 24 H -0.279 1.279 25 H -0.262 1.262 26 H 0.097 0.903 27 H 0.089 0.911 28 H 0.104 0.896 29 H 0.204 0.796 30 H 0.056 0.944 31 H 0.101 0.899 32 H 0.058 0.942 33 H 0.074 0.926 34 H 0.031 0.969 35 H 0.089 0.911 36 H 0.040 0.960 37 H 0.076 0.924 38 H 0.086 0.914 39 H 0.060 0.940 40 H 0.054 0.946 41 H 0.416 0.584 42 H 0.109 0.891 43 H 0.110 0.890 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.341 23.487 -12.079 31.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.072 4.072 3 O 0.012 5.988 4 N -0.110 5.110 5 C -0.183 4.183 6 C -0.211 4.211 7 C 0.007 3.993 8 N -0.264 5.264 9 C -0.125 4.125 10 C -0.067 4.067 11 C -0.150 4.150 12 C -0.002 4.002 13 N -0.367 5.367 14 C 0.318 3.682 15 O -0.447 6.447 16 C -0.282 4.282 17 S 0.074 5.926 18 C -0.696 4.696 19 H 0.101 0.899 20 C -0.191 4.191 21 N -0.547 5.547 22 Si 0.820 3.180 23 H -0.186 1.186 24 H -0.204 1.204 25 H -0.187 1.187 26 H 0.116 0.884 27 H 0.108 0.892 28 H 0.122 0.878 29 H 0.221 0.779 30 H 0.074 0.926 31 H 0.119 0.881 32 H 0.077 0.923 33 H 0.093 0.907 34 H 0.050 0.950 35 H 0.107 0.893 36 H 0.058 0.942 37 H 0.094 0.906 38 H 0.104 0.896 39 H 0.079 0.921 40 H 0.073 0.927 41 H 0.253 0.747 42 H 0.127 0.873 43 H 0.129 0.871 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 16.587 23.422 -13.453 31.696 hybrid contribution 0.235 -0.555 1.870 1.965 sum 16.822 22.866 -11.582 30.659 Atomic orbital electron populations 1.20471 0.81724 1.05297 1.05143 1.24928 0.97441 0.85119 0.99745 1.84774 1.11554 1.34254 1.68234 1.73887 0.97868 1.18005 1.21279 1.25337 1.00922 0.90028 1.01969 1.21086 0.91493 0.97716 1.10810 1.20270 1.00436 0.87713 0.90841 1.61897 1.25117 1.31595 1.07769 1.22427 0.92465 1.00575 0.97073 1.22003 0.97454 0.89484 0.97760 1.21632 0.99691 0.95208 0.98422 1.21329 0.96102 0.98127 0.84671 1.45746 1.51080 1.22803 1.17037 1.20058 0.78325 0.81387 0.88427 1.90690 1.62202 1.46263 1.45498 1.23384 1.03220 1.03285 0.98270 1.85568 1.62728 1.24071 1.20200 1.23183 1.36710 1.10907 0.98754 0.89870 1.26120 0.95751 0.93961 1.03283 1.70176 1.36804 1.09979 1.37786 0.85010 0.78374 0.78071 0.76582 1.18647 1.20436 1.18690 0.88422 0.89208 0.87754 0.77880 0.92560 0.88092 0.92326 0.90722 0.95035 0.89265 0.94210 0.90576 0.89553 0.92124 0.92731 0.74652 0.87253 0.87144 0.92006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.43 10.28 71.24 0.73 0.31 16 2 C -0.01 -0.10 7.49 25.04 0.19 0.08 16 3 O 0.07 1.31 11.20 71.67 0.80 2.11 16 4 N -0.40 -7.86 12.07 -59.27 -0.72 -8.58 16 5 C 0.00 -0.05 11.80 85.71 1.01 0.96 16 6 C -0.21 -2.50 5.02 -19.74 -0.10 -2.60 16 7 C 0.14 1.17 5.39 85.55 0.46 1.63 16 8 N -0.54 -5.25 4.71 -927.05 -4.36 -9.61 16 9 C 0.02 0.23 9.13 127.69 1.17 1.40 16 10 C 0.06 0.58 4.95 86.30 0.43 1.01 16 11 C -0.11 -1.24 5.25 30.59 0.16 -1.08 16 12 C 0.12 2.30 5.67 86.38 0.49 2.79 16 13 N -0.71 -16.42 5.56 -463.07 -2.57 -18.99 16 14 C 0.53 18.97 7.85 87.66 0.69 19.65 16 15 O -0.57 -25.82 15.86 -3.04 -0.05 -25.87 16 16 C -0.13 -5.03 6.16 71.24 0.44 -4.59 16 17 S -0.15 -8.42 20.57 -56.49 -1.16 -9.58 16 18 C -0.55 -31.03 9.50 67.95 0.65 -30.39 16 19 H 0.08 4.35 7.80 -2.91 -0.02 4.32 16 20 C 0.01 0.77 5.49 84.86 0.47 1.24 16 21 N -0.91 -55.70 13.22 21.65 0.29 -55.41 16 22 Si 1.00 43.16 29.55 68.60 2.03 45.19 16 23 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 24 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 25 H -0.26 -10.75 7.11 99.48 0.71 -10.05 16 26 H 0.10 0.57 8.14 -2.39 -0.02 0.56 16 27 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 28 H 0.10 0.38 8.09 -2.39 -0.02 0.36 16 29 H 0.20 1.85 8.06 -2.91 -0.02 1.83 16 30 H 0.06 0.44 8.05 -2.39 -0.02 0.42 16 31 H 0.10 0.64 7.75 -2.39 -0.02 0.62 16 32 H 0.06 0.68 7.06 -2.38 -0.02 0.67 16 33 H 0.07 0.74 6.57 -2.39 -0.02 0.72 16 34 H 0.03 0.30 8.12 -2.39 -0.02 0.28 16 35 H 0.09 0.74 7.86 -2.39 -0.02 0.72 16 36 H 0.04 0.41 8.11 -2.39 -0.02 0.39 16 37 H 0.08 0.79 6.60 -2.39 -0.02 0.78 16 38 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.42 6.69 8.47 -92.71 -0.79 5.91 16 42 H 0.11 3.78 8.14 -2.39 -0.02 3.76 16 43 H 0.11 3.81 8.14 -2.40 -0.02 3.79 16 44 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -79.34 385.88 1.25 -78.09 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: 0.22 Total: 12.22 kcal Atomic # 6 Polarization: -16.36 SS G_CDS: 6.78 Total: -9.58 kcal Atomic # 7 Polarization: -85.22 SS G_CDS: -7.36 Total: -92.59 kcal Atomic # 8 Polarization: -24.52 SS G_CDS: 0.75 Total: -23.76 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Atomic # 16 Polarization: -8.42 SS G_CDS: -1.16 Total: -9.58 kcal Total: -79.34 1.25 -78.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234154968.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.491 kcal (2) G-P(sol) polarization free energy of solvation -79.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds