Wall clock time and date at job start Tue Mar 31 2020 15:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30838 * 125.89833 * 2 1 4 4 N 1.40084 * 108.20584 * 180.25747 * 3 2 1 5 5 C 1.46499 * 126.03922 * 179.69407 * 4 3 2 6 6 C 1.34947 * 107.92450 * 359.71653 * 4 3 2 7 7 C 1.50700 * 126.12794 * 180.02562 * 6 4 3 8 8 C 1.35321 * 107.74542 * 0.02562 * 6 4 3 9 9 S 1.76203 * 126.03837 * 179.97438 * 8 6 4 10 10 O 1.42102 * 106.40079 * 336.46210 * 9 8 6 11 11 O 1.42096 * 106.39806 * 203.54166 * 9 8 6 12 12 N 1.65597 * 107.21418 * 90.00109 * 9 8 6 13 13 C 1.46496 * 120.00158 * 65.00354 * 12 9 8 14 14 H 1.08997 * 109.35812 * 25.17263 * 13 12 9 15 15 C 1.52957 * 109.41563 * 144.99675 * 13 12 9 16 16 C 1.53235 * 109.40287 * 183.70473 * 15 13 12 17 17 C 1.51273 * 108.53475 * 305.36800 * 16 15 13 18 18 C 1.37873 * 120.84954 * 231.32427 * 17 16 15 19 19 N 1.31516 * 119.99890 * 199.50798 * 18 17 16 20 20 Si 1.86806 * 120.00150 * 19.51371 * 18 17 16 21 21 H 1.48496 * 109.47024 * 5.36221 * 20 18 17 22 22 H 1.48501 * 109.46936 * 125.36462 * 20 18 17 23 23 H 1.48493 * 109.46963 * 245.36377 * 20 18 17 24 24 C 1.51264 * 118.29804 * 51.60473 * 17 16 15 25 25 C 1.52959 * 109.41153 * 265.35045 * 13 12 9 26 26 H 1.08997 * 109.47315 * 270.21113 * 1 2 3 27 27 H 1.08998 * 109.47441 * 30.21313 * 1 2 3 28 28 H 1.09000 * 109.47264 * 150.21204 * 1 2 3 29 29 H 1.08993 * 109.47269 * 270.03123 * 5 4 3 30 30 H 1.09005 * 109.46871 * 30.02888 * 5 4 3 31 31 H 1.08996 * 109.47258 * 150.02534 * 5 4 3 32 32 H 1.09001 * 109.47231 * 269.97603 * 7 6 4 33 33 H 1.09003 * 109.46679 * 29.97543 * 7 6 4 34 34 H 1.08996 * 109.47089 * 149.97720 * 7 6 4 35 35 H 0.97006 * 119.99932 * 244.99483 * 12 9 8 36 36 H 1.09002 * 109.48521 * 63.72505 * 15 13 12 37 37 H 1.08995 * 109.48323 * 303.67770 * 15 13 12 38 38 H 1.09001 * 109.62537 * 185.66217 * 16 15 13 39 39 H 1.08994 * 109.79010 * 65.17905 * 16 15 13 40 40 H 0.97002 * 120.00298 * 5.63156 * 19 18 17 41 41 H 1.08996 * 109.63035 * 68.11477 * 24 17 16 42 42 H 1.09005 * 109.62516 * 188.68206 * 24 17 16 43 43 H 1.09004 * 109.48262 * 296.27320 * 25 13 12 44 44 H 1.08999 * 109.48476 * 56.30316 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6087 0.6341 -0.0060 5 6 4.7898 1.5008 -0.0143 6 6 3.6142 -0.7153 -0.0032 7 6 4.8350 -1.5989 -0.0071 8 6 2.3271 -1.1330 0.0037 9 16 1.7808 -2.8082 0.0091 10 8 2.8420 -3.5780 -0.5392 11 8 0.4657 -2.8030 -0.5290 12 7 1.6365 -3.2715 1.5924 13 6 0.6390 -2.6329 2.4545 14 1 -0.1729 -2.2433 1.8404 15 6 0.0828 -3.6634 3.4385 16 6 -1.0257 -3.0194 4.2777 17 6 -0.4723 -1.7713 4.9290 18 6 -0.6046 -1.5635 6.2855 19 7 -0.4796 -0.3514 6.7804 20 14 -0.9614 -3.0036 7.4206 21 1 -0.9267 -4.2678 6.6423 22 1 0.0644 -3.0543 8.4932 23 1 -2.3054 -2.8334 8.0286 24 6 0.2244 -0.7539 4.0528 25 6 1.2925 -1.4827 3.2224 26 1 -0.3634 0.0038 1.0276 27 1 -0.3634 0.8880 -0.5171 28 1 -0.3634 -0.8919 -0.5105 29 1 5.0770 1.7137 -1.0440 30 1 4.5591 2.4344 0.4989 31 1 5.6121 0.9993 0.4960 32 1 5.1243 -1.8144 -1.0357 33 1 5.6536 -1.0896 0.5015 34 1 4.6101 -2.5316 0.5101 35 1 2.2124 -3.9659 1.9490 36 1 0.8821 -4.0078 4.0947 37 1 -0.3247 -4.5102 2.8863 38 1 -1.3554 -3.7180 5.0467 39 1 -1.8674 -2.7558 3.6374 40 1 -0.3758 0.4073 6.1850 41 1 -0.5014 -0.2839 3.3893 42 1 0.6982 0.0037 4.6770 43 1 2.0632 -1.8787 3.8838 44 1 1.7425 -0.7840 2.5172 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001260112854.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:55:36 Heat of formation + Delta-G solvation = -21.120395 kcal Electronic energy + Delta-G solvation = -27740.560227 eV Core-core repulsion = 24013.713603 eV Total energy + Delta-G solvation = -3726.846623 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.46255 -37.63566 -36.93111 -35.59695 -34.31666 -33.84162 -32.36160 -31.20774 -29.80751 -29.46875 -27.41716 -26.52604 -25.65259 -22.20122 -21.44988 -21.20062 -19.83255 -19.68409 -19.00292 -17.62118 -17.00026 -16.41427 -15.99441 -15.93159 -15.52979 -14.73051 -14.04311 -13.94245 -13.80533 -13.67805 -13.51035 -13.38866 -13.00965 -12.81212 -12.68253 -12.50949 -12.31130 -12.16580 -12.06187 -11.96444 -11.82613 -11.43621 -11.38340 -11.28084 -11.14187 -10.72892 -10.52895 -10.42416 -10.18543 -10.06141 -9.70287 -9.34104 -9.21220 -9.08032 -8.97226 -8.49107 -8.12934 -6.47940 -4.01459 0.75935 1.49705 2.27550 2.32471 3.40711 3.42820 3.44333 3.55675 4.02362 4.21795 4.24644 4.47430 4.57064 4.77005 4.84573 4.90919 5.11696 5.15535 5.24151 5.30658 5.43680 5.59441 5.64570 5.78688 5.85820 5.97272 6.00863 6.05992 6.13701 6.41985 6.54478 6.57335 6.68348 6.74493 6.77533 6.89379 7.02216 7.16309 7.23780 7.37291 7.39073 7.50025 7.61453 8.06397 8.35587 8.84085 9.57527 10.88386 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.015678 B = 0.004636 C = 0.004146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.465929 B = 6038.606522 C = 6752.527093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.175 3.825 3 N -0.298 5.298 4 N -0.365 5.365 5 C 0.094 3.906 6 C 0.207 3.793 7 C -0.113 4.113 8 C -0.813 4.813 9 S 2.723 3.277 10 O -0.978 6.978 11 O -0.962 6.962 12 N -1.114 6.114 13 C 0.162 3.838 14 H 0.082 0.918 15 C -0.110 4.110 16 C -0.013 4.013 17 C -0.574 4.574 18 C 0.041 3.959 19 N -0.898 5.898 20 Si 1.051 2.949 21 H -0.276 1.276 22 H -0.289 1.289 23 H -0.288 1.288 24 C 0.010 3.990 25 C -0.121 4.121 26 H 0.093 0.907 27 H 0.078 0.922 28 H 0.111 0.889 29 H 0.078 0.922 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.098 0.902 33 H 0.079 0.921 34 H 0.101 0.899 35 H 0.411 0.589 36 H 0.056 0.944 37 H 0.040 0.960 38 H 0.039 0.961 39 H 0.016 0.984 40 H 0.273 0.727 41 H 0.006 0.994 42 H 0.032 0.968 43 H 0.053 0.947 44 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.581 -1.199 -12.917 16.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.006 3.994 3 N -0.118 5.118 4 N -0.142 5.142 5 C -0.048 4.048 6 C 0.073 3.927 7 C -0.171 4.171 8 C -0.912 4.912 9 S 2.811 3.189 10 O -0.968 6.968 11 O -0.952 6.952 12 N -0.873 5.873 13 C 0.057 3.943 14 H 0.100 0.900 15 C -0.150 4.150 16 C -0.052 4.052 17 C -0.593 4.593 18 C -0.166 4.166 19 N -0.532 5.532 20 Si 0.880 3.120 21 H -0.202 1.202 22 H -0.216 1.216 23 H -0.215 1.215 24 C -0.029 4.029 25 C -0.160 4.160 26 H 0.112 0.888 27 H 0.097 0.903 28 H 0.129 0.871 29 H 0.097 0.903 30 H 0.113 0.887 31 H 0.108 0.892 32 H 0.116 0.884 33 H 0.098 0.902 34 H 0.120 0.880 35 H 0.245 0.755 36 H 0.074 0.926 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.034 0.966 40 H 0.084 0.916 41 H 0.024 0.976 42 H 0.050 0.950 43 H 0.072 0.928 44 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 10.308 -0.508 -12.149 15.940 hybrid contribution 0.931 0.245 -1.029 1.409 sum 11.239 -0.263 -13.177 17.321 Atomic orbital electron populations 1.20860 0.85554 1.05613 1.05105 1.21850 0.96771 0.88237 0.92591 1.77416 0.85550 1.22099 1.26707 1.48863 1.06327 1.04150 1.54840 1.21972 0.83831 0.95311 1.03665 1.20874 0.95598 0.84845 0.91426 1.20870 0.92430 0.98699 1.05090 1.31181 0.99743 1.24658 1.35571 1.00739 0.73348 0.72381 0.72396 1.93519 1.57173 1.68992 1.77102 1.93501 1.38008 1.86600 1.77080 1.55713 1.49522 1.51394 1.30696 1.20849 0.88392 0.93768 0.91341 0.90042 1.21874 1.00333 0.95964 0.96825 1.19785 0.93597 0.96081 0.95714 1.20967 1.39988 1.04011 0.94296 1.25685 0.93760 1.00973 0.96161 1.70738 1.43920 0.99053 1.39524 0.83839 0.76913 0.75864 0.75360 1.20156 1.21575 1.21489 1.19418 0.93270 0.95430 0.94734 1.22163 0.99665 0.96209 0.98006 0.88813 0.90289 0.87068 0.90301 0.88733 0.89150 0.88365 0.90246 0.88036 0.75483 0.92570 0.94149 0.94235 0.96566 0.91596 0.97596 0.94973 0.92824 0.94808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.72 10.14 36.00 0.37 -1.36 16 2 C 0.17 2.88 6.40 -82.41 -0.53 2.35 16 3 N -0.30 -4.87 12.58 33.67 0.42 -4.44 16 4 N -0.36 -4.86 4.01 -63.89 -0.26 -5.12 16 5 C 0.09 0.75 11.27 59.85 0.67 1.43 16 6 C 0.21 2.78 6.92 -82.26 -0.57 2.21 16 7 C -0.11 -1.10 9.15 36.01 0.33 -0.77 16 8 C -0.81 -12.63 5.11 -40.01 -0.20 -12.83 16 9 S 2.72 42.63 5.67 -107.50 -0.61 42.02 16 10 O -0.98 -15.58 15.79 -57.17 -0.90 -16.48 16 11 O -0.96 -17.19 14.69 -57.17 -0.84 -18.03 16 12 N -1.11 -17.01 5.47 -4.93 -0.03 -17.04 16 13 C 0.16 2.96 2.68 -67.98 -0.18 2.78 16 14 H 0.08 1.54 7.48 -51.93 -0.39 1.15 16 15 C -0.11 -2.12 5.46 -26.63 -0.15 -2.27 16 16 C -0.01 -0.30 5.69 -27.48 -0.16 -0.45 16 17 C -0.57 -14.49 5.38 -98.92 -0.53 -15.02 16 18 C 0.04 1.08 5.41 -17.82 -0.10 0.99 16 19 N -0.90 -25.86 13.48 55.43 0.75 -25.11 16 20 Si 1.05 23.82 28.17 -169.99 -4.79 19.04 16 21 H -0.28 -5.76 5.93 56.52 0.33 -5.43 16 22 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 23 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 24 C 0.01 0.23 5.67 -27.26 -0.15 0.08 16 25 C -0.12 -2.42 5.55 -26.41 -0.15 -2.57 16 26 H 0.09 1.49 8.07 -51.93 -0.42 1.07 16 27 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 28 H 0.11 1.71 5.66 -51.93 -0.29 1.42 16 29 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.09 0.49 7.05 -51.93 -0.37 0.13 16 32 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.08 0.54 7.08 -51.93 -0.37 0.17 16 34 H 0.10 1.03 6.78 -51.93 -0.35 0.68 16 35 H 0.41 5.30 8.84 -34.47 -0.30 5.00 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.04 0.87 4.67 -51.93 -0.24 0.63 16 39 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 40 H 0.27 7.85 7.06 -40.82 -0.29 7.56 16 41 H 0.01 0.14 8.08 -51.93 -0.42 -0.28 16 42 H 0.03 0.82 6.62 -51.93 -0.34 0.47 16 43 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 44 H 0.03 0.64 6.16 -51.93 -0.32 0.32 16 LS Contribution 353.52 15.07 5.33 5.33 Total: -1.00 -33.08 353.52 -8.62 -41.70 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -6.35 Total: 3.56 kcal Atomic # 6 Polarization: -24.08 SS G_CDS: -1.35 Total: -25.43 kcal Atomic # 7 Polarization: -52.60 SS G_CDS: 0.89 Total: -51.71 kcal Atomic # 8 Polarization: -32.77 SS G_CDS: -1.74 Total: -34.51 kcal Atomic # 14 Polarization: 23.82 SS G_CDS: -4.79 Total: 19.04 kcal Atomic # 16 Polarization: 42.63 SS G_CDS: -0.61 Total: 42.02 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.08 -8.62 -41.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001260112854.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.581 kcal (2) G-P(sol) polarization free energy of solvation -33.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds