Wall clock time and date at job start Tue Mar 31 2020 15:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30838 * 125.89833 * 2 1 4 4 N 1.40084 * 108.20584 * 180.25747 * 3 2 1 5 5 C 1.46499 * 126.03922 * 179.69407 * 4 3 2 6 6 C 1.34947 * 107.92450 * 359.71653 * 4 3 2 7 7 C 1.50700 * 126.12794 * 180.02562 * 6 4 3 8 8 C 1.35321 * 107.74542 * 0.02562 * 6 4 3 9 9 S 1.76203 * 126.03837 * 179.97438 * 8 6 4 10 10 O 1.42102 * 106.40079 * 336.46210 * 9 8 6 11 11 O 1.42096 * 106.39806 * 203.54166 * 9 8 6 12 12 N 1.65597 * 107.21418 * 90.00109 * 9 8 6 13 13 C 1.46496 * 120.00158 * 65.00354 * 12 9 8 14 14 H 1.08997 * 109.35812 * 25.17263 * 13 12 9 15 15 C 1.52957 * 109.41563 * 144.99675 * 13 12 9 16 16 C 1.53235 * 109.40287 * 183.70473 * 15 13 12 17 17 C 1.51273 * 108.53475 * 305.36800 * 16 15 13 18 18 C 1.37873 * 120.84954 * 231.32427 * 17 16 15 19 19 N 1.31516 * 119.99890 * 199.50798 * 18 17 16 20 20 Si 1.86806 * 120.00150 * 19.51371 * 18 17 16 21 21 H 1.48496 * 109.47024 * 5.36221 * 20 18 17 22 22 H 1.48501 * 109.46936 * 125.36462 * 20 18 17 23 23 H 1.48493 * 109.46963 * 245.36377 * 20 18 17 24 24 C 1.51264 * 118.29804 * 51.60473 * 17 16 15 25 25 C 1.52959 * 109.41153 * 265.35045 * 13 12 9 26 26 H 1.08997 * 109.47315 * 270.21113 * 1 2 3 27 27 H 1.08998 * 109.47441 * 30.21313 * 1 2 3 28 28 H 1.09000 * 109.47264 * 150.21204 * 1 2 3 29 29 H 1.08993 * 109.47269 * 270.03123 * 5 4 3 30 30 H 1.09005 * 109.46871 * 30.02888 * 5 4 3 31 31 H 1.08996 * 109.47258 * 150.02534 * 5 4 3 32 32 H 1.09001 * 109.47231 * 269.97603 * 7 6 4 33 33 H 1.09003 * 109.46679 * 29.97543 * 7 6 4 34 34 H 1.08996 * 109.47089 * 149.97720 * 7 6 4 35 35 H 0.97006 * 119.99932 * 244.99483 * 12 9 8 36 36 H 1.09002 * 109.48521 * 63.72505 * 15 13 12 37 37 H 1.08995 * 109.48323 * 303.67770 * 15 13 12 38 38 H 1.09001 * 109.62537 * 185.66217 * 16 15 13 39 39 H 1.08994 * 109.79010 * 65.17905 * 16 15 13 40 40 H 0.97002 * 120.00298 * 5.63156 * 19 18 17 41 41 H 1.08996 * 109.63035 * 68.11477 * 24 17 16 42 42 H 1.09005 * 109.62516 * 188.68206 * 24 17 16 43 43 H 1.09004 * 109.48262 * 296.27320 * 25 13 12 44 44 H 1.08999 * 109.48476 * 56.30316 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6087 0.6341 -0.0060 5 6 4.7898 1.5008 -0.0143 6 6 3.6142 -0.7153 -0.0032 7 6 4.8350 -1.5989 -0.0071 8 6 2.3271 -1.1330 0.0037 9 16 1.7808 -2.8082 0.0091 10 8 2.8420 -3.5780 -0.5392 11 8 0.4657 -2.8030 -0.5290 12 7 1.6365 -3.2715 1.5924 13 6 0.6390 -2.6329 2.4545 14 1 -0.1729 -2.2433 1.8404 15 6 0.0828 -3.6634 3.4385 16 6 -1.0257 -3.0194 4.2777 17 6 -0.4723 -1.7713 4.9290 18 6 -0.6046 -1.5635 6.2855 19 7 -0.4796 -0.3514 6.7804 20 14 -0.9614 -3.0036 7.4206 21 1 -0.9267 -4.2678 6.6423 22 1 0.0644 -3.0543 8.4932 23 1 -2.3054 -2.8334 8.0286 24 6 0.2244 -0.7539 4.0528 25 6 1.2925 -1.4827 3.2224 26 1 -0.3634 0.0038 1.0276 27 1 -0.3634 0.8880 -0.5171 28 1 -0.3634 -0.8919 -0.5105 29 1 5.0770 1.7137 -1.0440 30 1 4.5591 2.4344 0.4989 31 1 5.6121 0.9993 0.4960 32 1 5.1243 -1.8144 -1.0357 33 1 5.6536 -1.0896 0.5015 34 1 4.6101 -2.5316 0.5101 35 1 2.2124 -3.9659 1.9490 36 1 0.8821 -4.0078 4.0947 37 1 -0.3247 -4.5102 2.8863 38 1 -1.3554 -3.7180 5.0467 39 1 -1.8674 -2.7558 3.6374 40 1 -0.3758 0.4073 6.1850 41 1 -0.5014 -0.2839 3.3893 42 1 0.6982 0.0037 4.6770 43 1 2.0632 -1.8787 3.8838 44 1 1.7425 -0.7840 2.5172 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001260112854.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:55:35 Heat of formation + Delta-G solvation = -44.975934 kcal Electronic energy + Delta-G solvation = -27741.594680 eV Core-core repulsion = 24013.713603 eV Total energy + Delta-G solvation = -3727.881077 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.52102 -39.22483 -38.24317 -36.88470 -35.57213 -35.31785 -33.29939 -32.93988 -31.46083 -30.58314 -28.37078 -28.25506 -26.57815 -23.99961 -23.08807 -22.40607 -21.39678 -20.80620 -20.27912 -18.95223 -18.29043 -18.03632 -17.35583 -16.90321 -16.64791 -16.13837 -15.67222 -15.39140 -15.06073 -14.91096 -14.54356 -14.41801 -14.18294 -14.09324 -13.92912 -13.80764 -13.69867 -13.45570 -13.27876 -13.15247 -13.02357 -12.93043 -12.83686 -12.61816 -12.49627 -12.45403 -12.20302 -11.86418 -11.79039 -11.63097 -11.37362 -11.02398 -10.70755 -10.36846 -10.26443 -10.20838 -9.94049 -8.56193 -6.07974 -0.46254 0.48394 1.11454 1.38794 1.58384 1.63279 1.79026 2.18703 2.62104 2.81871 3.14785 3.16988 3.35727 3.58898 3.86583 3.94448 4.10747 4.18841 4.23123 4.27807 4.43080 4.50778 4.53334 4.58865 4.61771 4.66251 4.74402 4.85593 4.95282 4.97524 4.99707 5.01648 5.04663 5.26972 5.29622 5.36071 5.39519 5.50407 5.57793 5.79014 5.83954 6.09432 6.23113 6.34270 6.38797 6.79685 7.58384 8.79251 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.015678 B = 0.004636 C = 0.004146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.465929 B = 6038.606522 C = 6752.527093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.157 3.843 3 N -0.328 5.328 4 N -0.363 5.363 5 C 0.079 3.921 6 C 0.212 3.788 7 C -0.118 4.118 8 C -0.838 4.838 9 S 2.740 3.260 10 O -0.977 6.977 11 O -0.986 6.986 12 N -1.105 6.105 13 C 0.171 3.829 14 H 0.075 0.925 15 C -0.109 4.109 16 C -0.019 4.019 17 C -0.577 4.577 18 C -0.014 4.014 19 N -0.938 5.938 20 Si 1.089 2.911 21 H -0.242 1.242 22 H -0.292 1.292 23 H -0.289 1.289 24 C 0.006 3.994 25 C -0.106 4.106 26 H 0.080 0.920 27 H 0.091 0.909 28 H 0.108 0.892 29 H 0.100 0.900 30 H 0.093 0.907 31 H 0.122 0.878 32 H 0.115 0.885 33 H 0.113 0.887 34 H 0.098 0.902 35 H 0.425 0.575 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.047 0.953 39 H 0.014 0.986 40 H 0.257 0.743 41 H -0.003 1.003 42 H 0.002 0.998 43 H 0.051 0.949 44 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.536 -3.106 -13.953 19.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.012 4.012 3 N -0.149 5.149 4 N -0.140 5.140 5 C -0.060 4.060 6 C 0.076 3.924 7 C -0.175 4.175 8 C -0.937 4.937 9 S 2.829 3.171 10 O -0.967 6.967 11 O -0.976 6.976 12 N -0.865 5.865 13 C 0.065 3.935 14 H 0.093 0.907 15 C -0.148 4.148 16 C -0.058 4.058 17 C -0.595 4.595 18 C -0.212 4.212 19 N -0.574 5.574 20 Si 0.912 3.088 21 H -0.166 1.166 22 H -0.218 1.218 23 H -0.215 1.215 24 C -0.032 4.032 25 C -0.145 4.145 26 H 0.099 0.901 27 H 0.110 0.890 28 H 0.126 0.874 29 H 0.119 0.881 30 H 0.112 0.888 31 H 0.141 0.859 32 H 0.133 0.867 33 H 0.132 0.868 34 H 0.116 0.884 35 H 0.261 0.739 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.065 0.935 39 H 0.033 0.967 40 H 0.067 0.933 41 H 0.015 0.985 42 H 0.021 0.979 43 H 0.069 0.931 44 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 12.278 -2.440 -13.210 18.199 hybrid contribution 0.402 0.954 -0.813 1.316 sum 12.680 -1.486 -14.023 18.964 Atomic orbital electron populations 1.20827 0.85783 1.06134 1.04346 1.21982 0.97099 0.88858 0.93245 1.77315 0.87337 1.22788 1.27458 1.49223 1.06313 1.04863 1.53610 1.22452 0.82807 0.95083 1.05637 1.21438 0.96152 0.85259 0.89599 1.21111 0.91756 0.98098 1.06566 1.31131 1.00835 1.24019 1.37729 1.00116 0.72696 0.72265 0.72017 1.93513 1.56953 1.69280 1.77002 1.93471 1.39501 1.87066 1.77581 1.55441 1.49207 1.51656 1.30172 1.20532 0.88643 0.93075 0.91279 0.90718 1.21802 0.99523 0.96597 0.96909 1.19821 0.94556 0.95122 0.96294 1.21510 1.38487 1.05073 0.94478 1.26945 0.93736 1.02058 0.98506 1.70865 1.47653 0.99614 1.39317 0.83391 0.76517 0.74688 0.74171 1.16646 1.21842 1.21510 1.19414 0.94091 0.95103 0.94638 1.21943 0.98236 0.96738 0.97627 0.90135 0.88990 0.87378 0.88122 0.88813 0.85931 0.86724 0.86828 0.88380 0.73899 0.91776 0.91524 0.93506 0.96742 0.93315 0.98462 0.97892 0.93067 0.94057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.52 10.14 71.23 0.72 -2.80 16 2 C 0.16 5.15 6.40 43.10 0.28 5.42 16 3 N -0.33 -10.59 12.58 -47.39 -0.60 -11.19 16 4 N -0.36 -8.98 4.01 -356.03 -1.43 -10.41 16 5 C 0.08 1.05 11.27 127.77 1.44 2.49 16 6 C 0.21 5.20 6.92 41.41 0.29 5.48 16 7 C -0.12 -1.85 9.15 71.24 0.65 -1.20 16 8 C -0.84 -24.99 5.11 21.99 0.11 -24.88 16 9 S 2.74 81.34 5.67 -56.49 -0.32 81.02 16 10 O -0.98 -28.77 15.79 -128.00 -2.02 -30.79 16 11 O -0.99 -34.40 14.69 -128.00 -1.88 -36.28 16 12 N -1.10 -31.30 5.47 -169.51 -0.93 -32.23 16 13 C 0.17 6.02 2.68 44.96 0.12 6.14 16 14 H 0.07 2.77 7.48 -2.39 -0.02 2.75 16 15 C -0.11 -3.90 5.46 30.66 0.17 -3.74 16 16 C -0.02 -0.84 5.69 30.11 0.17 -0.67 16 17 C -0.58 -29.23 5.38 -16.17 -0.09 -29.32 16 18 C -0.01 -0.73 5.41 84.65 0.46 -0.28 16 19 N -0.94 -55.90 13.48 21.45 0.29 -55.61 16 20 Si 1.09 47.46 28.17 68.60 1.93 49.40 16 21 H -0.24 -9.17 5.93 99.48 0.59 -8.58 16 22 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 23 H -0.29 -12.51 7.11 99.48 0.71 -11.81 16 24 C 0.01 0.28 5.67 30.25 0.17 0.46 16 25 C -0.11 -4.20 5.55 30.80 0.17 -4.03 16 26 H 0.08 2.67 8.07 -2.39 -0.02 2.65 16 27 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 28 H 0.11 3.40 5.66 -2.39 -0.01 3.38 16 29 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 31 H 0.12 0.83 7.05 -2.39 -0.02 0.81 16 32 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.11 0.99 7.08 -2.39 -0.02 0.98 16 34 H 0.10 1.66 6.78 -2.39 -0.02 1.65 16 35 H 0.42 9.67 8.84 -96.74 -0.85 8.82 16 36 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 37 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 38 H 0.05 1.93 4.67 -2.39 -0.01 1.92 16 39 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 40 H 0.26 15.61 7.06 -92.71 -0.65 14.95 16 41 H 0.00 -0.15 8.08 -2.39 -0.02 -0.17 16 42 H 0.00 0.13 6.62 -2.38 -0.02 0.12 16 43 H 0.05 2.04 8.14 -2.38 -0.02 2.02 16 44 H 0.04 1.57 6.16 -2.39 -0.01 1.55 16 Total: -1.00 -72.92 353.52 -0.11 -73.03 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: 0.18 Total: 19.97 kcal Atomic # 6 Polarization: -51.56 SS G_CDS: 4.66 Total: -46.90 kcal Atomic # 7 Polarization: -106.78 SS G_CDS: -2.66 Total: -109.44 kcal Atomic # 8 Polarization: -63.17 SS G_CDS: -3.90 Total: -67.07 kcal Atomic # 14 Polarization: 47.46 SS G_CDS: 1.93 Total: 49.40 kcal Atomic # 16 Polarization: 81.34 SS G_CDS: -0.32 Total: 81.02 kcal Total: -72.92 -0.11 -73.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001260112854.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.056 kcal (2) G-P(sol) polarization free energy of solvation -72.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds