Wall clock time and date at job start Tue Mar 31 2020 15:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30498 * 125.65003 * 2 1 4 4 C 1.34129 * 109.25671 * 179.77584 * 3 2 1 5 5 S 1.76204 * 125.99109 * 180.24683 * 4 3 2 6 6 O 1.42103 * 106.39976 * 23.72014 * 5 4 3 7 7 O 1.42098 * 106.40236 * 156.63583 * 5 4 3 8 8 N 1.65591 * 107.21957 * 270.18057 * 5 4 3 9 9 C 1.46499 * 120.00167 * 269.99814 * 8 5 4 10 10 C 1.50699 * 109.47216 * 94.99679 * 9 8 5 11 11 H 1.08002 * 120.00031 * 0.02562 * 10 9 8 12 12 C 1.37880 * 120.00256 * 180.02562 * 10 9 8 13 13 N 1.31512 * 119.99500 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99902 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47399 * 60.00230 * 14 12 10 16 16 H 1.48504 * 109.46905 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47357 * 299.99756 * 14 12 10 18 18 C 1.46506 * 120.00208 * 90.00046 * 8 5 4 19 19 C 1.54275 * 110.02903 * 237.90795 * 18 8 5 20 20 C 1.54967 * 104.15728 * 217.13267 * 19 18 8 21 21 C 1.54896 * 102.77610 * 37.88854 * 20 19 18 22 22 C 1.53868 * 110.03401 * 120.68950 * 18 8 5 23 23 C 1.34666 * 108.02165 * 0.40230 * 4 3 2 24 24 N 1.35047 * 125.65435 * 180.02562 * 2 1 3 25 25 C 1.46507 * 126.39328 * 359.97438 * 24 2 1 26 26 H 1.09004 * 109.47222 * 269.97055 * 1 2 3 27 27 H 1.08996 * 109.47237 * 29.97295 * 1 2 3 28 28 H 1.09004 * 109.47461 * 149.97686 * 1 2 3 29 29 H 1.08995 * 109.47245 * 215.00150 * 9 8 5 30 30 H 1.08999 * 109.47000 * 335.00224 * 9 8 5 31 31 H 0.97008 * 119.99396 * 179.97438 * 13 12 10 32 32 H 1.08996 * 110.01307 * 359.29434 * 18 8 5 33 33 H 1.08992 * 110.48844 * 335.78152 * 19 18 8 34 34 H 1.09001 * 110.48043 * 98.42913 * 19 18 8 35 35 H 1.09000 * 110.71908 * 279.57725 * 20 19 18 36 36 H 1.08997 * 110.92217 * 156.29432 * 20 19 18 37 37 H 1.08995 * 110.48617 * 203.40404 * 21 20 19 38 38 H 1.09005 * 110.59405 * 80.81654 * 21 20 19 39 39 H 1.08996 * 110.03189 * 238.57182 * 22 18 8 40 40 H 1.09004 * 110.03189 * 359.95416 * 22 18 8 41 41 H 1.08002 * 126.59556 * 179.87817 * 23 4 3 42 42 H 1.09003 * 109.46811 * 270.02173 * 25 24 2 43 43 H 1.09001 * 109.46881 * 30.01608 * 25 24 2 44 44 H 1.08992 * 109.46991 * 150.02199 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2675 1.0604 0.0000 4 6 3.5543 0.6819 0.0050 5 16 4.9500 1.7574 0.0131 6 8 4.5037 2.9898 0.5618 7 8 6.0293 1.0100 0.5570 8 7 5.3422 2.0634 -1.5663 9 6 6.2901 1.1939 -2.2675 10 6 5.5330 0.1412 -3.0352 11 1 4.4536 0.1220 -3.0044 12 6 6.2182 -0.7976 -3.7771 13 7 7.5326 -0.7745 -3.8142 14 14 5.2795 -2.1020 -4.7293 15 1 4.3858 -1.4464 -5.7177 16 1 6.2404 -2.9843 -5.4389 17 1 4.4661 -2.9128 -3.7879 18 6 4.7413 3.2038 -2.2626 19 6 3.9894 2.7191 -3.5194 20 6 4.2510 3.8287 -4.5691 21 6 5.7206 4.2282 -4.2863 22 6 5.8413 4.1632 -2.7498 23 6 3.5926 -0.6642 -0.0008 24 7 2.2941 -1.0973 -0.0005 25 6 1.8426 -2.4911 -0.0006 26 1 -0.3634 -0.0005 1.0277 27 1 -0.3633 0.8902 -0.5134 28 1 -0.3634 -0.8898 -0.5142 29 1 6.8865 1.7893 -2.9587 30 1 6.9467 0.7129 -1.5424 31 1 8.0146 -1.4352 -4.3359 32 1 4.0562 3.7286 -1.5968 33 1 4.3938 1.7668 -3.8624 34 1 2.9224 2.6302 -3.3150 35 1 3.5831 4.6753 -4.4100 36 1 4.1445 3.4395 -5.5817 37 1 5.9161 5.2398 -4.6419 38 1 6.4067 3.5214 -4.7532 39 1 5.6895 5.1537 -2.3211 40 1 6.8222 3.7807 -2.4675 41 1 4.4777 -1.2832 -0.0009 42 1 1.7306 -2.8367 1.0271 43 1 0.8839 -2.5623 -0.5143 44 1 2.5772 -3.1109 -0.5144 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001260545492.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:50:20 Heat of formation + Delta-G solvation = -21.028658 kcal Electronic energy + Delta-G solvation = -27844.651349 eV Core-core repulsion = 24117.808704 eV Total energy + Delta-G solvation = -3726.842645 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.94564 -38.05976 -36.43251 -35.06179 -34.02024 -33.95498 -32.26801 -31.79220 -28.11840 -27.77959 -27.44080 -26.74367 -25.92050 -22.58115 -21.88744 -20.06827 -19.98682 -19.48966 -18.10044 -17.34151 -16.89892 -16.47031 -15.88337 -15.43624 -15.36255 -14.73356 -14.51197 -14.33591 -13.94974 -13.63137 -13.43907 -12.94780 -12.77120 -12.74564 -12.55039 -12.40128 -12.33191 -12.04649 -11.60864 -11.47110 -11.31511 -11.13051 -10.95838 -10.93144 -10.71157 -10.55686 -10.49357 -10.32059 -10.29475 -9.97973 -9.88875 -9.78575 -9.62128 -9.34210 -8.51562 -8.44092 -7.90982 -6.12967 -4.16554 1.25669 1.99439 2.77832 2.88939 3.17047 3.25655 3.25950 3.89830 4.32107 4.43194 4.55852 4.62446 4.78704 4.95132 5.17558 5.18612 5.23357 5.26259 5.29172 5.34375 5.42120 5.49592 5.71527 5.83307 5.93506 6.08286 6.19250 6.21182 6.24162 6.28528 6.33220 6.46613 6.50170 6.56306 6.68335 6.88463 7.00787 7.20411 7.35600 7.41743 7.52773 7.77336 7.86909 8.05109 8.17442 8.86584 9.46112 10.94634 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.009291 B = 0.007124 C = 0.005372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3013.086484 B = 3929.304404 C = 5211.048516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.190 3.810 3 N -0.412 5.412 4 C -0.547 4.547 5 S 2.720 3.280 6 O -0.969 6.969 7 O -0.961 6.961 8 N -0.973 5.973 9 C 0.242 3.758 10 C -0.533 4.533 11 H 0.064 0.936 12 C 0.066 3.934 13 N -0.886 5.886 14 Si 0.888 3.112 15 H -0.276 1.276 16 H -0.286 1.286 17 H -0.281 1.281 18 C 0.157 3.843 19 C -0.152 4.152 20 C -0.120 4.120 21 C -0.118 4.118 22 C -0.130 4.130 23 C 0.085 3.915 24 N -0.458 5.458 25 C 0.067 3.933 26 H 0.078 0.922 27 H 0.091 0.909 28 H 0.071 0.929 29 H 0.046 0.954 30 H 0.052 0.948 31 H 0.264 0.736 32 H 0.087 0.913 33 H 0.121 0.879 34 H 0.052 0.948 35 H 0.055 0.945 36 H 0.059 0.941 37 H 0.054 0.946 38 H 0.070 0.930 39 H 0.061 0.939 40 H 0.075 0.925 41 H 0.194 0.806 42 H 0.079 0.921 43 H 0.088 0.912 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.177 -0.263 3.425 11.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.075 4.075 3 N -0.130 5.130 4 C -0.756 4.756 5 S 2.807 3.193 6 O -0.959 6.959 7 O -0.951 6.951 8 N -0.812 5.812 9 C 0.120 3.880 10 C -0.572 4.572 11 H 0.082 0.918 12 C -0.137 4.137 13 N -0.524 5.524 14 Si 0.716 3.284 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.207 1.207 18 C 0.050 3.950 19 C -0.191 4.191 20 C -0.158 4.158 21 C -0.156 4.156 22 C -0.170 4.170 23 C -0.055 4.055 24 N -0.140 5.140 25 C -0.075 4.075 26 H 0.097 0.903 27 H 0.110 0.890 28 H 0.090 0.910 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.105 0.895 33 H 0.139 0.861 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.089 0.911 39 H 0.080 0.920 40 H 0.094 0.906 41 H 0.211 0.789 42 H 0.097 0.903 43 H 0.107 0.893 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -10.934 0.603 4.105 11.695 hybrid contribution -0.762 -2.366 -1.060 2.702 sum -11.696 -1.763 3.045 12.214 Atomic orbital electron populations 1.20143 0.84754 1.03963 1.03293 1.23535 0.95823 0.81575 1.06592 1.70232 0.99404 1.27449 1.15951 1.33652 1.12199 1.07415 1.22366 1.01142 0.72300 0.72766 0.73129 1.93490 1.82918 1.42355 1.77140 1.93550 1.50574 1.73764 1.77249 1.57474 1.55864 1.37302 1.30548 1.19214 0.87392 0.88166 0.93206 1.21541 0.93505 1.12639 1.29539 0.91825 1.24917 0.94722 0.97449 0.96618 1.69918 1.05998 1.35752 1.40715 0.86736 0.79669 0.81741 0.80244 1.20200 1.21203 1.20689 1.21318 0.93876 0.85531 0.94314 1.23179 0.99195 1.02093 0.94641 1.22408 0.96254 0.98173 0.98990 1.22281 0.97191 1.00288 0.95838 1.22466 1.00150 0.98570 0.95789 1.22715 0.87407 0.95321 1.00041 1.45497 1.06668 1.07900 1.53906 1.22132 1.02372 0.79334 1.03678 0.90296 0.89031 0.91022 0.93580 0.93048 0.92583 0.89492 0.86117 0.92965 0.92647 0.92201 0.92728 0.91099 0.92041 0.90649 0.78890 0.90256 0.89325 0.89007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.64 10.19 36.00 0.37 -0.28 16 2 C 0.19 2.97 7.90 -155.42 -1.23 1.74 16 3 N -0.41 -8.03 11.25 -10.02 -0.11 -8.14 16 4 C -0.55 -11.08 7.13 -17.81 -0.13 -11.21 16 5 S 2.72 59.05 5.84 -107.50 -0.63 58.42 16 6 O -0.97 -22.19 16.61 -57.17 -0.95 -23.14 16 7 O -0.96 -22.55 16.39 -57.17 -0.94 -23.48 16 8 N -0.97 -20.85 2.71 -107.38 -0.29 -21.14 16 9 C 0.24 5.83 4.91 -5.19 -0.03 5.80 16 10 C -0.53 -13.32 7.24 -34.44 -0.25 -13.57 16 11 H 0.06 1.58 6.94 -52.49 -0.36 1.22 16 12 C 0.07 1.71 5.46 -17.82 -0.10 1.62 16 13 N -0.89 -24.29 13.29 55.43 0.74 -23.55 16 14 Si 0.89 20.03 29.54 -169.99 -5.02 15.01 16 15 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 16 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 17 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 18 C 0.16 3.01 3.29 -66.81 -0.22 2.79 16 19 C -0.15 -2.84 6.29 -25.03 -0.16 -3.00 16 20 C -0.12 -1.90 6.91 -24.69 -0.17 -2.07 16 21 C -0.12 -1.89 6.83 -25.07 -0.17 -2.06 16 22 C -0.13 -2.26 6.03 -25.62 -0.15 -2.41 16 23 C 0.09 1.53 11.31 -16.56 -0.19 1.35 16 24 N -0.46 -6.78 3.15 -121.28 -0.38 -7.16 16 25 C 0.07 0.63 10.97 59.85 0.66 1.28 16 26 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.07 0.55 7.07 -51.93 -0.37 0.18 16 29 H 0.05 1.15 6.80 -51.93 -0.35 0.79 16 30 H 0.05 1.35 6.91 -51.93 -0.36 0.99 16 31 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 32 H 0.09 1.66 6.97 -51.93 -0.36 1.30 16 33 H 0.12 2.60 4.41 -51.93 -0.23 2.37 16 34 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 40 H 0.07 1.38 6.89 -51.93 -0.36 1.02 16 41 H 0.19 3.26 8.06 -52.49 -0.42 2.83 16 42 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.09 0.62 7.05 -51.93 -0.37 0.26 16 44 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 365.38 15.07 5.51 5.51 Total: -1.00 -33.10 365.38 -10.39 -43.49 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -6.54 Total: 4.21 kcal Atomic # 6 Polarization: -18.25 SS G_CDS: -1.76 Total: -20.02 kcal Atomic # 7 Polarization: -59.94 SS G_CDS: -0.05 Total: -59.99 kcal Atomic # 8 Polarization: -44.73 SS G_CDS: -1.89 Total: -46.62 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Atomic # 16 Polarization: 59.05 SS G_CDS: -0.63 Total: 58.42 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.10 -10.39 -43.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001260545492.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.458 kcal (2) G-P(sol) polarization free energy of solvation -33.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds