Wall clock time and date at job start Tue Mar 31 2020 15:50:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30498 * 125.65003 * 2 1 4 4 C 1.34129 * 109.25671 * 179.77584 * 3 2 1 5 5 S 1.76204 * 125.99109 * 180.24683 * 4 3 2 6 6 O 1.42103 * 106.39976 * 23.72014 * 5 4 3 7 7 O 1.42098 * 106.40236 * 156.63583 * 5 4 3 8 8 N 1.65591 * 107.21957 * 270.18057 * 5 4 3 9 9 C 1.46499 * 120.00167 * 269.99814 * 8 5 4 10 10 C 1.50699 * 109.47216 * 94.99679 * 9 8 5 11 11 H 1.08002 * 120.00031 * 0.02562 * 10 9 8 12 12 C 1.37880 * 120.00256 * 180.02562 * 10 9 8 13 13 N 1.31512 * 119.99500 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99902 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47399 * 60.00230 * 14 12 10 16 16 H 1.48504 * 109.46905 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47357 * 299.99756 * 14 12 10 18 18 C 1.46506 * 120.00208 * 90.00046 * 8 5 4 19 19 C 1.54275 * 110.02903 * 237.90795 * 18 8 5 20 20 C 1.54967 * 104.15728 * 217.13267 * 19 18 8 21 21 C 1.54896 * 102.77610 * 37.88854 * 20 19 18 22 22 C 1.53868 * 110.03401 * 120.68950 * 18 8 5 23 23 C 1.34666 * 108.02165 * 0.40230 * 4 3 2 24 24 N 1.35047 * 125.65435 * 180.02562 * 2 1 3 25 25 C 1.46507 * 126.39328 * 359.97438 * 24 2 1 26 26 H 1.09004 * 109.47222 * 269.97055 * 1 2 3 27 27 H 1.08996 * 109.47237 * 29.97295 * 1 2 3 28 28 H 1.09004 * 109.47461 * 149.97686 * 1 2 3 29 29 H 1.08995 * 109.47245 * 215.00150 * 9 8 5 30 30 H 1.08999 * 109.47000 * 335.00224 * 9 8 5 31 31 H 0.97008 * 119.99396 * 179.97438 * 13 12 10 32 32 H 1.08996 * 110.01307 * 359.29434 * 18 8 5 33 33 H 1.08992 * 110.48844 * 335.78152 * 19 18 8 34 34 H 1.09001 * 110.48043 * 98.42913 * 19 18 8 35 35 H 1.09000 * 110.71908 * 279.57725 * 20 19 18 36 36 H 1.08997 * 110.92217 * 156.29432 * 20 19 18 37 37 H 1.08995 * 110.48617 * 203.40404 * 21 20 19 38 38 H 1.09005 * 110.59405 * 80.81654 * 21 20 19 39 39 H 1.08996 * 110.03189 * 238.57182 * 22 18 8 40 40 H 1.09004 * 110.03189 * 359.95416 * 22 18 8 41 41 H 1.08002 * 126.59556 * 179.87817 * 23 4 3 42 42 H 1.09003 * 109.46811 * 270.02173 * 25 24 2 43 43 H 1.09001 * 109.46881 * 30.01608 * 25 24 2 44 44 H 1.08992 * 109.46991 * 150.02199 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2675 1.0604 0.0000 4 6 3.5543 0.6819 0.0050 5 16 4.9500 1.7574 0.0131 6 8 4.5037 2.9898 0.5618 7 8 6.0293 1.0100 0.5570 8 7 5.3422 2.0634 -1.5663 9 6 6.2901 1.1939 -2.2675 10 6 5.5330 0.1412 -3.0352 11 1 4.4536 0.1220 -3.0044 12 6 6.2182 -0.7976 -3.7771 13 7 7.5326 -0.7745 -3.8142 14 14 5.2795 -2.1020 -4.7293 15 1 4.3858 -1.4464 -5.7177 16 1 6.2404 -2.9843 -5.4389 17 1 4.4661 -2.9128 -3.7879 18 6 4.7413 3.2038 -2.2626 19 6 3.9894 2.7191 -3.5194 20 6 4.2510 3.8287 -4.5691 21 6 5.7206 4.2282 -4.2863 22 6 5.8413 4.1632 -2.7498 23 6 3.5926 -0.6642 -0.0008 24 7 2.2941 -1.0973 -0.0005 25 6 1.8426 -2.4911 -0.0006 26 1 -0.3634 -0.0005 1.0277 27 1 -0.3633 0.8902 -0.5134 28 1 -0.3634 -0.8898 -0.5142 29 1 6.8865 1.7893 -2.9587 30 1 6.9467 0.7129 -1.5424 31 1 8.0146 -1.4352 -4.3359 32 1 4.0562 3.7286 -1.5968 33 1 4.3938 1.7668 -3.8624 34 1 2.9224 2.6302 -3.3150 35 1 3.5831 4.6753 -4.4100 36 1 4.1445 3.4395 -5.5817 37 1 5.9161 5.2398 -4.6419 38 1 6.4067 3.5214 -4.7532 39 1 5.6895 5.1537 -2.3211 40 1 6.8222 3.7807 -2.4675 41 1 4.4777 -1.2832 -0.0009 42 1 1.7306 -2.8367 1.0271 43 1 0.8839 -2.5623 -0.5143 44 1 2.5772 -3.1109 -0.5144 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001260545492.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:50:19 Heat of formation + Delta-G solvation = -42.911614 kcal Electronic energy + Delta-G solvation = -27845.600265 eV Core-core repulsion = 24117.808704 eV Total energy + Delta-G solvation = -3727.791561 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.19908 -39.58813 -38.22890 -36.86265 -35.69984 -35.14773 -34.13887 -32.85939 -29.70682 -29.39117 -28.47343 -27.80147 -27.58861 -24.47493 -23.27961 -21.42424 -21.18382 -20.99944 -19.66185 -18.88358 -18.62040 -18.32467 -17.10329 -16.99289 -16.76745 -16.38203 -16.09192 -15.88433 -15.24124 -14.72276 -14.60772 -14.42229 -14.21756 -13.94092 -13.79759 -13.60142 -13.44522 -13.38752 -13.21036 -13.15123 -13.10907 -12.92525 -12.66041 -12.55098 -12.47020 -12.20880 -12.05790 -11.83790 -11.74464 -11.62268 -11.28694 -11.20083 -11.05478 -10.80957 -10.51227 -9.83422 -9.61548 -8.12300 -6.21893 -0.42889 0.63971 1.38181 1.41926 1.48963 1.55302 1.72411 2.24267 2.44139 2.85124 3.17464 3.20930 3.65351 3.78863 3.83217 3.88535 3.90414 4.12613 4.25787 4.32090 4.39554 4.55061 4.65190 4.66247 4.72681 4.76415 4.79450 4.81930 4.97040 4.98570 5.04321 5.08056 5.19235 5.26744 5.30882 5.34981 5.42876 5.55306 5.62312 5.76396 5.86848 6.05854 6.12937 6.18577 6.76165 6.85625 7.43701 8.95412 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.009291 B = 0.007124 C = 0.005372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3013.086484 B = 3929.304404 C = 5211.048516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.200 3.800 3 N -0.456 5.456 4 C -0.573 4.573 5 S 2.727 3.273 6 O -0.987 6.987 7 O -0.990 6.990 8 N -0.975 5.975 9 C 0.260 3.740 10 C -0.525 4.525 11 H 0.064 0.936 12 C 0.018 3.982 13 N -0.923 5.923 14 Si 0.948 3.052 15 H -0.272 1.272 16 H -0.288 1.288 17 H -0.266 1.266 18 C 0.147 3.853 19 C -0.151 4.151 20 C -0.112 4.112 21 C -0.113 4.113 22 C -0.133 4.133 23 C 0.075 3.925 24 N -0.451 5.451 25 C 0.055 3.945 26 H 0.101 0.899 27 H 0.092 0.908 28 H 0.105 0.895 29 H 0.032 0.968 30 H 0.022 0.978 31 H 0.264 0.736 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.055 0.945 35 H 0.081 0.919 36 H 0.067 0.933 37 H 0.085 0.915 38 H 0.048 0.952 39 H 0.084 0.916 40 H 0.057 0.943 41 H 0.195 0.805 42 H 0.105 0.895 43 H 0.120 0.880 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.328 -1.086 2.670 14.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.067 4.067 3 N -0.175 5.175 4 C -0.784 4.784 5 S 2.818 3.182 6 O -0.977 6.977 7 O -0.980 6.980 8 N -0.814 5.814 9 C 0.137 3.863 10 C -0.564 4.564 11 H 0.082 0.918 12 C -0.182 4.182 13 N -0.563 5.563 14 Si 0.774 3.226 15 H -0.197 1.197 16 H -0.213 1.213 17 H -0.191 1.191 18 C 0.041 3.959 19 C -0.190 4.190 20 C -0.150 4.150 21 C -0.151 4.151 22 C -0.172 4.172 23 C -0.068 4.068 24 N -0.132 5.132 25 C -0.085 4.085 26 H 0.119 0.881 27 H 0.111 0.889 28 H 0.124 0.876 29 H 0.050 0.950 30 H 0.040 0.960 31 H 0.073 0.927 32 H 0.106 0.894 33 H 0.109 0.891 34 H 0.074 0.926 35 H 0.099 0.901 36 H 0.085 0.915 37 H 0.104 0.896 38 H 0.067 0.933 39 H 0.103 0.897 40 H 0.075 0.925 41 H 0.212 0.788 42 H 0.123 0.877 43 H 0.138 0.862 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -14.084 -0.206 3.356 14.479 hybrid contribution 0.115 -2.134 -0.751 2.265 sum -13.968 -2.340 2.605 14.401 Atomic orbital electron populations 1.20438 0.80712 1.05693 1.05260 1.24548 0.97788 0.80867 1.03447 1.70173 0.99178 1.29734 1.18454 1.33047 1.12230 1.07955 1.25218 1.00511 0.72378 0.72479 0.72870 1.93448 1.83230 1.43556 1.77503 1.93502 1.52372 1.74201 1.77944 1.57345 1.55934 1.37801 1.30270 1.18793 0.87388 0.88104 0.92045 1.21639 0.93396 1.12445 1.28906 0.91780 1.25658 0.95407 0.99521 0.97626 1.70048 1.07552 1.36787 1.41881 0.85762 0.78479 0.79278 0.79088 1.19744 1.21342 1.19140 1.21579 0.94597 0.85186 0.94518 1.23066 0.99000 1.01749 0.95147 1.22402 0.96405 0.97901 0.98300 1.22248 0.96954 1.01500 0.94406 1.22509 0.98453 0.99087 0.97147 1.22783 0.89187 0.94737 1.00071 1.45797 1.05174 1.09980 1.52205 1.22610 1.03749 0.76174 1.05968 0.88083 0.88949 0.87626 0.94981 0.96002 0.92658 0.89410 0.89074 0.92577 0.90082 0.91462 0.89636 0.93296 0.89747 0.92471 0.78786 0.87692 0.86178 0.88806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.03 10.19 71.23 0.73 -0.31 16 2 C 0.20 5.80 7.90 138.13 1.09 6.90 16 3 N -0.46 -17.59 11.25 -185.63 -2.09 -19.68 16 4 C -0.57 -23.59 7.13 83.52 0.60 -22.99 16 5 S 2.73 123.70 5.84 -56.49 -0.33 123.37 16 6 O -0.99 -46.82 16.61 -128.00 -2.13 -48.94 16 7 O -0.99 -49.13 16.39 -128.00 -2.10 -51.22 16 8 N -0.98 -43.54 2.71 -493.66 -1.34 -44.88 16 9 C 0.26 13.14 4.91 85.63 0.42 13.57 16 10 C -0.52 -26.87 7.24 25.60 0.19 -26.69 16 11 H 0.06 3.24 6.94 -2.91 -0.02 3.22 16 12 C 0.02 0.92 5.46 84.66 0.46 1.38 16 13 N -0.92 -52.00 13.29 21.45 0.28 -51.71 16 14 Si 0.95 40.86 29.54 68.60 2.03 42.89 16 15 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 16 H -0.29 -12.40 7.11 99.48 0.71 -11.69 16 17 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 18 C 0.15 5.75 3.29 45.72 0.15 5.90 16 19 C -0.15 -5.59 6.29 31.70 0.20 -5.39 16 20 C -0.11 -3.35 6.91 31.91 0.22 -3.13 16 21 C -0.11 -3.50 6.83 31.67 0.22 -3.28 16 22 C -0.13 -4.59 6.03 31.32 0.19 -4.40 16 23 C 0.08 2.70 11.31 83.09 0.94 3.64 16 24 N -0.45 -12.36 3.15 -537.60 -1.69 -14.06 16 25 C 0.06 0.82 10.97 127.77 1.40 2.22 16 26 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.11 1.03 7.07 -2.38 -0.02 1.01 16 29 H 0.03 1.70 6.80 -2.39 -0.02 1.68 16 30 H 0.02 1.23 6.91 -2.39 -0.02 1.22 16 31 H 0.26 14.18 8.31 -92.70 -0.77 13.41 16 32 H 0.09 3.40 6.97 -2.39 -0.02 3.38 16 33 H 0.09 3.97 4.41 -2.39 -0.01 3.96 16 34 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 39 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 40 H 0.06 2.17 6.89 -2.38 -0.02 2.16 16 41 H 0.20 6.72 8.06 -2.91 -0.02 6.70 16 42 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.12 1.05 7.05 -2.39 -0.02 1.04 16 44 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -74.63 365.38 0.43 -74.20 By element: Atomic # 1 Polarization: 21.63 SS G_CDS: 1.00 Total: 22.63 kcal Atomic # 6 Polarization: -39.39 SS G_CDS: 6.80 Total: -32.59 kcal Atomic # 7 Polarization: -125.49 SS G_CDS: -4.84 Total: -130.33 kcal Atomic # 8 Polarization: -95.94 SS G_CDS: -4.22 Total: -100.17 kcal Atomic # 14 Polarization: 40.86 SS G_CDS: 2.03 Total: 42.89 kcal Atomic # 16 Polarization: 123.70 SS G_CDS: -0.33 Total: 123.37 kcal Total: -74.63 0.43 -74.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001260545492.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.283 kcal (2) G-P(sol) polarization free energy of solvation -74.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds