Wall clock time and date at job start Tue Mar 31 2020 16:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50702 * 109.47059 * 2 1 4 4 C 1.38135 * 119.97744 * 100.27141 * 3 2 1 5 5 C 1.38831 * 119.95577 * 180.20667 * 4 3 2 6 6 N 1.40034 * 120.04599 * 179.79238 * 5 4 3 7 7 C 1.34767 * 120.00007 * 214.84717 * 6 5 4 8 8 O 1.21297 * 120.00352 * 355.51808 * 7 6 5 9 9 C 1.50707 * 120.00068 * 175.51976 * 7 6 5 10 10 H 1.08997 * 109.47081 * 59.99769 * 9 7 6 11 11 C 1.50703 * 109.46778 * 299.99857 * 9 7 6 12 12 H 1.07999 * 119.99900 * 325.18250 * 11 9 7 13 13 C 1.37873 * 120.00019 * 145.45616 * 11 9 7 14 14 N 1.31505 * 120.00205 * 184.82183 * 13 11 9 15 15 Si 1.86810 * 119.99921 * 4.82189 * 13 11 9 16 16 H 1.48500 * 109.47163 * 94.79198 * 15 13 11 17 17 H 1.48496 * 109.46876 * 214.79379 * 15 13 11 18 18 H 1.48500 * 109.46697 * 334.79189 * 15 13 11 19 19 C 1.50700 * 109.47100 * 179.97438 * 9 7 6 20 20 C 1.38233 * 119.99842 * 64.89301 * 19 9 7 21 21 C 1.38239 * 119.99840 * 179.80526 * 20 19 9 22 22 C 1.38237 * 119.99801 * 0.39977 * 21 20 19 23 23 C 1.38241 * 120.00084 * 359.85437 * 22 21 20 24 24 C 1.38232 * 119.99705 * 245.16236 * 19 9 7 25 25 C 1.38873 * 119.90839 * 359.52236 * 5 4 3 26 26 C 1.38085 * 119.95375 * 0.25294 * 25 5 4 27 27 C 1.38454 * 119.97886 * 280.00349 * 3 2 1 28 28 F 1.35097 * 119.95274 * 359.97438 * 27 3 2 29 29 H 1.08998 * 109.47167 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47349 * 300.00211 * 1 2 3 31 31 H 1.09003 * 109.46910 * 59.99868 * 1 2 3 32 32 H 1.08999 * 109.47048 * 240.00233 * 2 1 3 33 33 H 1.08994 * 109.46822 * 119.99534 * 2 1 3 34 34 H 1.08005 * 120.02196 * 0.02562 * 4 3 2 35 35 H 0.97000 * 119.99597 * 34.84666 * 6 5 4 36 36 H 0.97000 * 120.00220 * 180.02562 * 14 13 11 37 37 H 1.08000 * 120.00559 * 359.97438 * 20 19 9 38 38 H 1.07997 * 120.00248 * 180.22344 * 21 20 19 39 39 H 1.08004 * 120.00000 * 179.82939 * 22 21 20 40 40 H 1.07996 * 119.99944 * 179.97438 * 23 22 21 41 41 H 1.07989 * 120.00460 * 359.97438 * 24 19 9 42 42 H 1.07998 * 120.02351 * 180.26689 * 25 5 4 43 43 H 1.08008 * 119.97639 * 180.02562 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.4636 2.0004 1.1774 5 6 2.9222 3.3108 1.1776 6 7 3.3557 3.9017 2.3709 7 6 3.1388 5.2135 2.5909 8 8 2.6416 5.8999 1.7232 9 6 3.5140 5.8276 3.9150 10 1 4.5843 5.7061 4.0816 11 6 2.7526 5.1422 5.0203 12 1 1.7442 4.7962 4.8474 13 6 3.3412 4.9620 6.2540 14 7 2.7145 4.2812 7.1884 15 14 5.0290 5.6850 6.5982 16 1 4.8762 7.0084 7.2542 17 1 5.7848 4.7729 7.4936 18 1 5.7674 5.8482 5.3202 19 6 3.1713 7.2951 3.9033 20 6 1.8518 7.6959 3.8084 21 6 1.5372 9.0420 3.8016 22 6 2.5427 9.9872 3.8814 23 6 3.8627 9.5864 3.9710 24 6 4.1770 8.2402 3.9817 25 6 2.9557 4.0329 -0.0081 26 6 2.5281 3.4483 -1.1837 27 6 2.0665 2.1425 -1.1811 28 9 1.6499 1.5719 -2.3325 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5137 0.8900 34 1 2.4412 1.4356 2.0977 35 1 3.8121 3.3668 3.0391 36 1 3.1284 4.1547 8.0565 37 1 1.0665 6.9575 3.7423 38 1 0.5060 9.3552 3.7311 39 1 2.2971 11.0390 3.8734 40 1 4.6483 10.3248 4.0330 41 1 5.2081 7.9271 4.0519 42 1 3.3162 5.0510 -0.0108 43 1 2.5545 4.0095 -2.1062 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271973523.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:28:15 Heat of formation + Delta-G solvation = -41.362974 kcal Electronic energy + Delta-G solvation = -27076.266905 eV Core-core repulsion = 23193.178584 eV Total energy + Delta-G solvation = -3883.088320 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.138 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -48.72492 -40.20205 -38.82135 -37.76691 -34.70670 -33.87243 -33.38002 -31.62325 -30.19771 -29.90284 -28.85042 -27.50652 -24.13795 -23.85046 -22.58173 -21.99070 -21.82698 -20.46371 -19.36998 -17.45595 -17.26500 -17.17114 -16.64158 -16.02876 -15.81969 -15.50263 -14.69166 -14.55821 -14.39508 -14.06876 -14.02146 -13.78488 -13.59081 -13.22375 -13.18395 -12.79235 -12.72564 -12.64568 -12.56419 -12.20576 -11.99528 -11.82692 -11.77538 -11.27080 -11.09478 -11.06257 -10.79481 -10.54366 -10.34246 -9.95250 -9.76930 -9.65100 -9.12081 -8.85552 -8.73107 -8.20320 -7.90203 -7.72326 -6.39981 -4.45743 1.28277 1.35916 2.08135 2.14621 3.06660 3.14688 3.20161 3.24649 3.57121 3.88050 4.12746 4.43152 4.54810 4.66204 4.82993 4.91174 5.08993 5.28776 5.39790 5.44484 5.47889 5.49601 5.53863 5.60766 5.70365 5.83389 5.86199 5.87304 5.99242 6.05202 6.16807 6.18942 6.24745 6.36453 6.37168 6.42257 6.49689 6.67124 6.75436 6.78688 7.10234 7.14598 7.18540 7.24652 7.50549 7.72310 7.92995 8.11787 8.58673 8.81393 9.16847 10.70541 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.013347 B = 0.003742 C = 0.003211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.405641 B = 7480.696958 C = 8718.098952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.081 4.081 3 C -0.098 4.098 4 C -0.123 4.123 5 C 0.160 3.840 6 N -0.669 5.669 7 C 0.537 3.463 8 O -0.539 6.539 9 C 0.019 3.981 10 H 0.080 0.920 11 C -0.515 4.515 12 H 0.083 0.917 13 C 0.087 3.913 14 N -0.879 5.879 15 Si 0.865 3.135 16 H -0.269 1.269 17 H -0.283 1.283 18 H -0.258 1.258 19 C -0.030 4.030 20 C -0.073 4.073 21 C -0.128 4.128 22 C -0.142 4.142 23 C -0.128 4.128 24 C -0.136 4.136 25 C -0.104 4.104 26 C -0.132 4.132 27 C 0.067 3.933 28 F -0.145 7.145 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.136 0.864 35 H 0.418 0.582 36 H 0.270 0.730 37 H 0.117 0.883 38 H 0.111 0.889 39 H 0.109 0.891 40 H 0.110 0.890 41 H 0.109 0.891 42 H 0.148 0.852 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.728 -2.857 -10.600 11.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.118 4.118 3 C -0.099 4.099 4 C -0.143 4.143 5 C 0.064 3.936 6 N -0.313 5.313 7 C 0.327 3.673 8 O -0.415 6.415 9 C -0.002 4.002 10 H 0.098 0.902 11 C -0.552 4.552 12 H 0.101 0.899 13 C -0.118 4.118 14 N -0.514 5.514 15 Si 0.692 3.308 16 H -0.194 1.194 17 H -0.209 1.209 18 H -0.183 1.183 19 C -0.031 4.031 20 C -0.091 4.091 21 C -0.147 4.147 22 C -0.160 4.160 23 C -0.146 4.146 24 C -0.155 4.155 25 C -0.125 4.125 26 C -0.152 4.152 27 C 0.047 3.953 28 F -0.124 7.124 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.154 0.846 35 H 0.255 0.745 36 H 0.080 0.920 37 H 0.135 0.865 38 H 0.129 0.871 39 H 0.127 0.873 40 H 0.128 0.872 41 H 0.127 0.873 42 H 0.166 0.834 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 1.364 -2.415 -10.955 11.301 hybrid contribution 0.909 0.102 0.650 1.122 sum 2.273 -2.313 -10.306 10.804 Atomic orbital electron populations 1.21739 0.94540 1.01740 1.02485 1.20446 0.96473 0.91812 1.03069 1.19631 1.01474 0.97039 0.91764 1.20748 1.00748 0.94952 0.97879 1.17908 0.96694 0.92402 0.86603 1.43628 1.58590 1.11270 1.17790 1.21481 0.75783 0.80456 0.89544 1.90601 1.43465 1.61095 1.46378 1.18645 1.00251 0.89786 0.91512 0.90237 1.20510 1.02355 1.38225 0.94123 0.89900 1.24971 0.97528 0.93591 0.95742 1.69858 1.38614 1.37996 1.04917 0.87019 0.84573 0.80209 0.78985 1.19398 1.20904 1.18288 1.20022 0.93160 0.95372 0.94582 1.20848 0.96395 0.94967 0.96874 1.21042 0.98518 0.93489 1.01603 1.20885 0.93178 0.98547 1.03359 1.20897 0.96146 0.95505 1.02093 1.20987 0.98553 0.93078 1.02852 1.21195 1.00162 1.01376 0.89744 1.20985 1.01345 0.93372 0.99488 1.17436 1.03798 0.92511 0.81583 1.91432 1.88341 1.84950 1.47678 0.92319 0.92196 0.92574 0.90896 0.90492 0.84598 0.74544 0.91994 0.86536 0.87074 0.87266 0.87195 0.87271 0.83419 0.84916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.89 37.16 0.37 -1.18 16 2 C -0.08 -0.87 5.79 -27.88 -0.16 -1.04 16 3 C -0.10 -1.30 5.14 -104.58 -0.54 -1.84 16 4 C -0.12 -1.73 9.58 -39.40 -0.38 -2.11 16 5 C 0.16 2.58 6.30 -83.66 -0.53 2.05 16 6 N -0.67 -11.60 5.22 -9.84 -0.05 -11.65 16 7 C 0.54 10.85 6.88 -10.99 -0.08 10.78 16 8 O -0.54 -11.73 12.81 5.54 0.07 -11.66 16 9 C 0.02 0.41 1.89 -94.07 -0.18 0.24 16 10 H 0.08 1.64 4.76 -51.93 -0.25 1.40 16 11 C -0.52 -12.54 8.13 -34.44 -0.28 -12.82 16 12 H 0.08 2.26 8.06 -52.49 -0.42 1.83 16 13 C 0.09 2.20 5.47 -17.83 -0.10 2.10 16 14 N -0.88 -23.89 13.96 55.43 0.77 -23.12 16 15 Si 0.87 18.95 27.33 -169.99 -4.65 14.30 16 16 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 17 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 18 H -0.26 -5.16 5.76 56.52 0.33 -4.84 16 19 C -0.03 -0.64 4.08 -104.63 -0.43 -1.07 16 20 C -0.07 -1.52 8.25 -39.58 -0.33 -1.85 16 21 C -0.13 -2.34 10.05 -39.58 -0.40 -2.74 16 22 C -0.14 -2.39 10.05 -39.58 -0.40 -2.79 16 23 C -0.13 -2.22 10.05 -39.58 -0.40 -2.62 16 24 C -0.14 -2.65 9.41 -39.58 -0.37 -3.02 16 25 C -0.10 -1.67 8.69 -39.40 -0.34 -2.01 16 26 C -0.13 -1.87 10.02 -39.54 -0.40 -2.27 16 27 C 0.07 0.94 7.24 -39.41 -0.29 0.65 16 28 F -0.15 -2.00 16.65 2.25 0.04 -1.96 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.74 7.94 -51.93 -0.41 0.33 16 33 H 0.08 0.74 8.00 -51.93 -0.42 0.32 16 34 H 0.14 1.73 8.03 -52.48 -0.42 1.30 16 35 H 0.42 6.60 8.77 -40.82 -0.36 6.24 16 36 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 37 H 0.12 2.54 7.93 -52.49 -0.42 2.13 16 38 H 0.11 1.74 8.06 -52.49 -0.42 1.31 16 39 H 0.11 1.50 8.06 -52.48 -0.42 1.08 16 40 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 41 H 0.11 1.96 7.95 -52.49 -0.42 1.54 16 42 H 0.15 2.53 6.23 -52.49 -0.33 2.20 16 43 H 0.13 1.60 8.06 -52.48 -0.42 1.18 16 LS Contribution 365.48 15.07 5.51 5.51 Total: -1.00 -28.16 365.48 -9.13 -37.29 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: -5.61 Total: 12.83 kcal Atomic # 6 Polarization: -16.33 SS G_CDS: -5.21 Total: -21.54 kcal Atomic # 7 Polarization: -35.49 SS G_CDS: 0.72 Total: -34.77 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: 0.07 Total: -11.66 kcal Atomic # 9 Polarization: -2.00 SS G_CDS: 0.04 Total: -1.96 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -4.65 Total: 14.30 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -28.16 -9.13 -37.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271973523.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.078 kcal (2) G-P(sol) polarization free energy of solvation -28.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds