Wall clock time and date at job start Tue Mar 31 2020 16:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50702 * 109.47059 * 2 1 4 4 C 1.38135 * 119.97744 * 100.27141 * 3 2 1 5 5 C 1.38831 * 119.95577 * 180.20667 * 4 3 2 6 6 N 1.40034 * 120.04599 * 179.79238 * 5 4 3 7 7 C 1.34767 * 120.00007 * 214.84717 * 6 5 4 8 8 O 1.21297 * 120.00352 * 355.51808 * 7 6 5 9 9 C 1.50707 * 120.00068 * 175.51976 * 7 6 5 10 10 H 1.08997 * 109.47081 * 59.99769 * 9 7 6 11 11 C 1.50703 * 109.46778 * 299.99857 * 9 7 6 12 12 H 1.07999 * 119.99900 * 325.18250 * 11 9 7 13 13 C 1.37873 * 120.00019 * 145.45616 * 11 9 7 14 14 N 1.31505 * 120.00205 * 184.82183 * 13 11 9 15 15 Si 1.86810 * 119.99921 * 4.82189 * 13 11 9 16 16 H 1.48500 * 109.47163 * 94.79198 * 15 13 11 17 17 H 1.48496 * 109.46876 * 214.79379 * 15 13 11 18 18 H 1.48500 * 109.46697 * 334.79189 * 15 13 11 19 19 C 1.50700 * 109.47100 * 179.97438 * 9 7 6 20 20 C 1.38233 * 119.99842 * 64.89301 * 19 9 7 21 21 C 1.38239 * 119.99840 * 179.80526 * 20 19 9 22 22 C 1.38237 * 119.99801 * 0.39977 * 21 20 19 23 23 C 1.38241 * 120.00084 * 359.85437 * 22 21 20 24 24 C 1.38232 * 119.99705 * 245.16236 * 19 9 7 25 25 C 1.38873 * 119.90839 * 359.52236 * 5 4 3 26 26 C 1.38085 * 119.95375 * 0.25294 * 25 5 4 27 27 C 1.38454 * 119.97886 * 280.00349 * 3 2 1 28 28 F 1.35097 * 119.95274 * 359.97438 * 27 3 2 29 29 H 1.08998 * 109.47167 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47349 * 300.00211 * 1 2 3 31 31 H 1.09003 * 109.46910 * 59.99868 * 1 2 3 32 32 H 1.08999 * 109.47048 * 240.00233 * 2 1 3 33 33 H 1.08994 * 109.46822 * 119.99534 * 2 1 3 34 34 H 1.08005 * 120.02196 * 0.02562 * 4 3 2 35 35 H 0.97000 * 119.99597 * 34.84666 * 6 5 4 36 36 H 0.97000 * 120.00220 * 180.02562 * 14 13 11 37 37 H 1.08000 * 120.00559 * 359.97438 * 20 19 9 38 38 H 1.07997 * 120.00248 * 180.22344 * 21 20 19 39 39 H 1.08004 * 120.00000 * 179.82939 * 22 21 20 40 40 H 1.07996 * 119.99944 * 179.97438 * 23 22 21 41 41 H 1.07989 * 120.00460 * 359.97438 * 24 19 9 42 42 H 1.07998 * 120.02351 * 180.26689 * 25 5 4 43 43 H 1.08008 * 119.97639 * 180.02562 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.4636 2.0004 1.1774 5 6 2.9222 3.3108 1.1776 6 7 3.3557 3.9017 2.3709 7 6 3.1388 5.2135 2.5909 8 8 2.6416 5.8999 1.7232 9 6 3.5140 5.8276 3.9150 10 1 4.5843 5.7061 4.0816 11 6 2.7526 5.1422 5.0203 12 1 1.7442 4.7962 4.8474 13 6 3.3412 4.9620 6.2540 14 7 2.7145 4.2812 7.1884 15 14 5.0290 5.6850 6.5982 16 1 4.8762 7.0084 7.2542 17 1 5.7848 4.7729 7.4936 18 1 5.7674 5.8482 5.3202 19 6 3.1713 7.2951 3.9033 20 6 1.8518 7.6959 3.8084 21 6 1.5372 9.0420 3.8016 22 6 2.5427 9.9872 3.8814 23 6 3.8627 9.5864 3.9710 24 6 4.1770 8.2402 3.9817 25 6 2.9557 4.0329 -0.0081 26 6 2.5281 3.4483 -1.1837 27 6 2.0665 2.1425 -1.1811 28 9 1.6499 1.5719 -2.3325 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5137 0.8900 34 1 2.4412 1.4356 2.0977 35 1 3.8121 3.3668 3.0391 36 1 3.1284 4.1547 8.0565 37 1 1.0665 6.9575 3.7423 38 1 0.5060 9.3552 3.7311 39 1 2.2971 11.0390 3.8734 40 1 4.6483 10.3248 4.0330 41 1 5.2081 7.9271 4.0519 42 1 3.3162 5.0510 -0.0108 43 1 2.5545 4.0095 -2.1062 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271973523.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:28:15 Heat of formation + Delta-G solvation = -54.543164 kcal Electronic energy + Delta-G solvation = -27076.838441 eV Core-core repulsion = 23193.178584 eV Total energy + Delta-G solvation = -3883.659856 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.138 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.85293 -41.63278 -40.17451 -39.15089 -35.97177 -35.59741 -34.60249 -33.36705 -31.63571 -31.04935 -30.11237 -29.01879 -25.68442 -25.10601 -23.83586 -23.39061 -23.12614 -21.78426 -20.83318 -19.15057 -18.71894 -18.44524 -18.01960 -17.42499 -17.15417 -16.62803 -16.30031 -16.03431 -15.82234 -15.40716 -15.28574 -14.91283 -14.82083 -14.67122 -14.43483 -14.34665 -14.13797 -13.89273 -13.78013 -13.71788 -13.42780 -13.04130 -12.93685 -12.78120 -12.71196 -12.03285 -12.00758 -11.95318 -11.81634 -11.61984 -11.39374 -11.10621 -10.90430 -10.55729 -9.91407 -9.65262 -9.39624 -9.00296 -8.35370 -6.44700 0.06875 0.20911 0.62982 0.69191 1.33143 1.40414 1.44936 1.68946 2.20888 2.29357 2.62951 2.95409 3.13924 3.29247 3.63814 3.75775 4.03352 4.12009 4.19545 4.19622 4.23830 4.32793 4.37605 4.39397 4.44776 4.55238 4.58342 4.66096 4.81041 4.89375 4.95455 4.96680 5.03316 5.15127 5.19585 5.27371 5.30772 5.32416 5.34510 5.37832 5.52976 5.69294 5.73483 5.92805 5.97086 6.18033 6.28944 6.50526 6.58656 7.20678 7.26404 8.78730 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.013347 B = 0.003742 C = 0.003211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.405641 B = 7480.696958 C = 8718.098952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.081 4.081 3 C -0.094 4.094 4 C -0.121 4.121 5 C 0.137 3.863 6 N -0.662 5.662 7 C 0.535 3.465 8 O -0.559 6.559 9 C 0.023 3.977 10 H 0.089 0.911 11 C -0.502 4.502 12 H 0.038 0.962 13 C 0.040 3.960 14 N -0.928 5.928 15 Si 0.920 3.080 16 H -0.275 1.275 17 H -0.281 1.281 18 H -0.227 1.227 19 C -0.057 4.057 20 C -0.103 4.103 21 C -0.134 4.134 22 C -0.136 4.136 23 C -0.125 4.125 24 C -0.151 4.151 25 C -0.117 4.117 26 C -0.130 4.130 27 C 0.065 3.935 28 F -0.141 7.141 29 H 0.079 0.921 30 H 0.049 0.951 31 H 0.047 0.953 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.149 0.851 35 H 0.423 0.577 36 H 0.271 0.729 37 H 0.088 0.912 38 H 0.132 0.868 39 H 0.149 0.851 40 H 0.148 0.852 41 H 0.124 0.876 42 H 0.133 0.867 43 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.147 -1.980 -11.619 12.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.118 4.118 3 C -0.095 4.095 4 C -0.141 4.141 5 C 0.042 3.958 6 N -0.306 5.306 7 C 0.325 3.675 8 O -0.437 6.437 9 C 0.002 3.998 10 H 0.107 0.893 11 C -0.540 4.540 12 H 0.056 0.944 13 C -0.161 4.161 14 N -0.565 5.565 15 Si 0.744 3.256 16 H -0.200 1.200 17 H -0.206 1.206 18 H -0.150 1.150 19 C -0.058 4.058 20 C -0.121 4.121 21 C -0.152 4.152 22 C -0.154 4.154 23 C -0.142 4.142 24 C -0.169 4.169 25 C -0.137 4.137 26 C -0.149 4.149 27 C 0.045 3.955 28 F -0.120 7.120 29 H 0.098 0.902 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.102 0.898 33 H 0.111 0.889 34 H 0.167 0.833 35 H 0.261 0.739 36 H 0.080 0.920 37 H 0.106 0.894 38 H 0.150 0.850 39 H 0.167 0.833 40 H 0.166 0.834 41 H 0.142 0.858 42 H 0.151 0.849 43 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 2.789 -1.563 -12.011 12.429 hybrid contribution 0.340 -0.174 0.855 0.937 sum 3.129 -1.738 -11.156 11.716 Atomic orbital electron populations 1.21735 0.94210 1.02898 1.01554 1.20552 0.96637 0.90177 1.04438 1.19934 1.00260 0.98273 0.91045 1.20896 1.00189 0.94162 0.98873 1.18116 0.98181 0.93387 0.86105 1.43473 1.58222 1.10421 1.18468 1.21286 0.75830 0.81324 0.89079 1.90579 1.44456 1.61857 1.46815 1.18562 1.00077 0.90336 0.90839 0.89314 1.20408 1.00557 1.37717 0.95275 0.94388 1.25676 1.01245 0.93838 0.95353 1.69987 1.40734 1.40213 1.05575 0.86135 0.80570 0.78855 0.80045 1.20023 1.20648 1.15002 1.20048 0.93886 0.95348 0.96493 1.20818 0.95959 0.95996 0.99342 1.21347 1.00404 0.92573 1.00856 1.21353 0.92615 1.00157 1.01241 1.21373 0.97465 0.95329 1.00066 1.21260 0.98744 0.93904 1.02991 1.21110 1.01201 1.00898 0.90496 1.21141 1.00529 0.93665 0.99609 1.17546 1.03480 0.92529 0.81950 1.91443 1.88242 1.84833 1.47477 0.90179 0.93230 0.93388 0.89783 0.88909 0.83295 0.73920 0.91989 0.89373 0.84974 0.83341 0.83394 0.85817 0.84925 0.82960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.83 9.89 71.98 0.71 -2.12 16 2 C -0.08 -1.59 5.79 29.85 0.17 -1.42 16 3 C -0.09 -2.38 5.14 -19.84 -0.10 -2.49 16 4 C -0.12 -3.37 9.58 22.39 0.21 -3.16 16 5 C 0.14 4.49 6.30 38.12 0.24 4.73 16 6 N -0.66 -23.64 5.22 -303.44 -1.58 -25.23 16 7 C 0.53 22.37 6.88 87.66 0.60 22.97 16 8 O -0.56 -25.25 12.81 -3.08 -0.04 -25.29 16 9 C 0.02 1.01 1.89 -13.03 -0.02 0.98 16 10 H 0.09 3.61 4.76 -2.39 -0.01 3.60 16 11 C -0.50 -25.54 8.13 25.60 0.21 -25.33 16 12 H 0.04 2.22 8.06 -2.91 -0.02 2.20 16 13 C 0.04 2.06 5.47 84.65 0.46 2.52 16 14 N -0.93 -52.31 13.96 21.44 0.30 -52.01 16 15 Si 0.92 38.75 27.33 68.60 1.88 40.63 16 16 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 17 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 18 H -0.23 -8.30 5.76 99.48 0.57 -7.73 16 19 C -0.06 -2.42 4.08 -19.87 -0.08 -2.51 16 20 C -0.10 -4.43 8.25 22.27 0.18 -4.25 16 21 C -0.13 -4.75 10.05 22.27 0.22 -4.53 16 22 C -0.14 -4.14 10.05 22.27 0.22 -3.92 16 23 C -0.12 -3.87 10.05 22.27 0.22 -3.65 16 24 C -0.15 -5.56 9.41 22.27 0.21 -5.35 16 25 C -0.12 -3.78 8.69 22.39 0.19 -3.58 16 26 C -0.13 -3.61 10.02 22.30 0.22 -3.39 16 27 C 0.06 1.74 7.24 22.38 0.16 1.91 16 28 F -0.14 -3.65 16.65 44.97 0.75 -2.90 16 29 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.08 1.50 7.94 -2.39 -0.02 1.48 16 33 H 0.09 1.55 8.00 -2.39 -0.02 1.53 16 34 H 0.15 3.70 8.03 -2.91 -0.02 3.67 16 35 H 0.42 13.73 8.77 -92.71 -0.81 12.92 16 36 H 0.27 14.34 8.31 -92.71 -0.77 13.57 16 37 H 0.09 4.16 7.93 -2.91 -0.02 4.14 16 38 H 0.13 3.97 8.06 -2.91 -0.02 3.95 16 39 H 0.15 3.35 8.06 -2.91 -0.02 3.33 16 40 H 0.15 3.45 8.06 -2.91 -0.02 3.43 16 41 H 0.12 4.09 7.95 -2.92 -0.02 4.06 16 42 H 0.13 4.70 6.23 -2.91 -0.02 4.68 16 43 H 0.15 3.51 8.06 -2.91 -0.02 3.49 16 Total: -1.00 -63.37 365.48 5.44 -57.93 By element: Atomic # 1 Polarization: 39.35 SS G_CDS: 0.09 Total: 39.44 kcal Atomic # 6 Polarization: -36.62 SS G_CDS: 4.05 Total: -32.57 kcal Atomic # 7 Polarization: -75.95 SS G_CDS: -1.28 Total: -77.24 kcal Atomic # 8 Polarization: -25.25 SS G_CDS: -0.04 Total: -25.29 kcal Atomic # 9 Polarization: -3.65 SS G_CDS: 0.75 Total: -2.90 kcal Atomic # 14 Polarization: 38.75 SS G_CDS: 1.88 Total: 40.63 kcal Total: -63.37 5.44 -57.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271973523.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.387 kcal (2) G-P(sol) polarization free energy of solvation -63.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds