Wall clock time and date at job start Tue Mar 31 2020 14:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38847 * 120.74982 * 2 1 4 4 C 1.38062 * 119.30680 * 179.97438 * 3 2 1 5 5 C 1.50705 * 119.56942 * 179.97438 * 4 3 2 6 6 N 1.31942 * 120.85101 * 0.25198 * 4 3 2 7 7 C 1.32350 * 121.63850 * 359.47930 * 6 4 3 8 8 N 1.39374 * 119.70342 * 180.26813 * 7 6 4 9 9 C 1.34782 * 119.99710 * 354.88057 * 8 7 6 10 10 O 1.21584 * 119.99714 * 5.06880 * 9 8 7 11 11 N 1.34776 * 119.99938 * 185.06369 * 9 8 7 12 12 C 1.40018 * 119.99862 * 185.17161 * 11 9 8 13 13 C 1.38917 * 119.99479 * 213.09450 * 12 11 9 14 14 C 1.38016 * 119.99285 * 179.71861 * 13 12 11 15 15 C 1.38898 * 119.99931 * 0.54914 * 14 13 12 16 16 O 1.35791 * 119.99570 * 179.70009 * 15 14 13 17 17 C 1.34823 * 116.99649 * 185.84326 * 16 15 14 18 18 H 1.07994 * 119.99775 * 5.43094 * 17 16 15 19 19 C 1.38626 * 119.99551 * 185.43251 * 17 16 15 20 20 N 1.31582 * 120.00212 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 119.99796 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47361 * 90.00294 * 21 19 17 23 23 H 1.48506 * 109.47099 * 210.00401 * 21 19 17 24 24 H 1.48503 * 109.47202 * 329.99966 * 21 19 17 25 25 C 1.38905 * 120.00767 * 359.72608 * 15 14 13 26 26 C 1.38004 * 119.99584 * 359.97438 * 25 15 14 27 27 C 1.38343 * 120.74968 * 179.97438 * 2 1 3 28 28 H 1.09004 * 109.47807 * 89.99884 * 1 2 3 29 29 H 1.09004 * 109.47365 * 209.99895 * 1 2 3 30 30 H 1.09005 * 109.47137 * 329.99854 * 1 2 3 31 31 H 1.07997 * 120.34639 * 359.95753 * 3 2 1 32 32 H 1.09000 * 109.47158 * 90.00380 * 5 4 3 33 33 H 1.09006 * 109.46726 * 209.99374 * 5 4 3 34 34 H 1.08993 * 109.47128 * 329.99390 * 5 4 3 35 35 H 0.96994 * 120.00543 * 174.88871 * 8 7 6 36 36 H 0.96999 * 120.00140 * 5.16613 * 11 9 8 37 37 H 1.07999 * 120.00360 * 359.97438 * 13 12 11 38 38 H 1.07995 * 119.99666 * 180.27140 * 14 13 12 39 39 H 0.96995 * 119.99831 * 180.02562 * 20 19 17 40 40 H 1.07999 * 120.00170 * 179.97438 * 25 15 14 41 41 H 1.08004 * 119.99685 * 179.97438 * 26 25 15 42 42 H 1.08006 * 120.45373 * 0.03393 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1933 0.0000 4 6 3.5971 1.1585 0.0005 5 6 4.3736 2.4501 0.0000 6 7 4.2450 0.0091 -0.0039 7 6 3.6043 -1.1490 0.0012 8 7 4.3293 -2.3393 0.0018 9 6 5.6724 -2.3103 -0.1069 10 8 6.2589 -1.2453 -0.1127 11 7 6.3652 -3.4619 -0.2091 12 6 7.7652 -3.4386 -0.2129 13 6 8.4733 -4.3747 -0.9559 14 6 9.8532 -4.3481 -0.9643 15 6 10.5339 -3.3925 -0.2208 16 8 11.8916 -3.3702 -0.2242 17 6 12.4915 -2.4980 0.6106 18 1 11.8992 -1.9205 1.3049 19 6 13.8686 -2.3424 0.5777 20 7 14.5902 -3.0456 -0.2686 21 14 14.6999 -1.1344 1.7349 22 1 15.0575 -1.8262 2.9993 23 1 15.9309 -0.6038 1.0957 24 1 13.7724 -0.0128 2.0295 25 6 9.8260 -2.4601 0.5268 26 6 8.4461 -2.4827 0.5303 27 6 2.2143 -1.1889 0.0005 28 1 -0.3635 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5139 31 1 1.6949 2.1387 -0.0007 32 1 4.5604 2.7622 1.0275 33 1 5.3238 2.3025 -0.5134 34 1 3.7983 3.2196 -0.5147 35 1 3.8674 -3.1886 0.0803 36 1 5.8940 -4.3067 -0.2799 37 1 7.9441 -5.1206 -1.5303 38 1 10.4037 -5.0730 -1.5454 39 1 15.5538 -2.9370 -0.2913 40 1 10.3553 -1.7174 1.1052 41 1 7.8956 -1.7580 1.1118 42 1 1.6941 -2.1354 0.0004 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320245345.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:42 Heat of formation + Delta-G solvation = 23.590131 kcal Electronic energy + Delta-G solvation = -26054.489087 eV Core-core repulsion = 22194.137306 eV Total energy + Delta-G solvation = -3860.351781 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.07167 -39.87494 -38.68410 -36.72253 -35.09665 -34.34510 -33.90763 -32.16619 -31.35138 -30.15798 -28.36169 -27.85254 -27.30890 -25.25459 -23.52303 -22.26499 -22.03154 -21.16436 -20.19908 -18.59830 -18.00939 -17.68891 -16.97371 -16.23119 -16.15237 -15.83645 -15.63787 -14.70943 -14.46811 -14.38171 -14.04590 -13.85153 -13.58911 -13.56122 -13.51932 -13.02643 -12.85089 -12.79311 -12.71929 -12.47690 -12.31715 -11.89841 -11.74429 -11.52167 -11.47885 -10.98433 -10.74695 -10.60746 -10.40328 -10.20269 -9.61452 -9.55493 -9.29988 -9.07612 -8.65626 -8.36210 -8.15660 -6.86767 -6.40214 -3.97561 0.95589 1.14489 2.17809 2.25723 2.44376 3.15460 3.18497 3.23328 3.26478 3.77353 3.89973 4.02045 4.29687 4.39560 4.62481 4.73125 4.84805 4.92121 5.14472 5.15247 5.16960 5.29004 5.33271 5.40466 5.53830 5.55906 5.67369 5.72058 5.79452 5.94609 6.05383 6.14944 6.18194 6.20897 6.31837 6.57076 6.72512 6.77172 6.97259 7.11216 7.16745 7.35617 7.48513 7.79071 7.82770 8.05000 8.16158 8.66871 9.05791 9.75622 10.77854 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.019421 B = 0.002373 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.406705 B =11794.382949 C =13005.663338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.014 4.014 3 C -0.214 4.214 4 C 0.167 3.833 5 C -0.105 4.105 6 N -0.475 5.475 7 C 0.392 3.608 8 N -0.671 5.671 9 C 0.686 3.314 10 O -0.508 6.508 11 N -0.672 5.672 12 C 0.055 3.945 13 C -0.095 4.095 14 C -0.177 4.177 15 C 0.145 3.855 16 O -0.178 6.178 17 C -0.389 4.389 18 H 0.092 0.908 19 C 0.038 3.962 20 N -0.864 5.864 21 Si 0.940 3.060 22 H -0.274 1.274 23 H -0.278 1.278 24 H -0.267 1.267 25 C -0.216 4.216 26 C -0.064 4.064 27 C -0.223 4.223 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.132 0.868 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.411 0.589 36 H 0.397 0.603 37 H 0.114 0.886 38 H 0.122 0.878 39 H 0.269 0.731 40 H 0.130 0.870 41 H 0.122 0.878 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.014 3.231 1.028 28.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.022 4.022 3 C -0.235 4.235 4 C 0.028 3.972 5 C -0.162 4.162 6 N -0.191 5.191 7 C 0.159 3.841 8 N -0.320 5.320 9 C 0.386 3.614 10 O -0.377 6.377 11 N -0.321 5.321 12 C -0.038 4.038 13 C -0.115 4.115 14 C -0.197 4.197 15 C 0.091 3.909 16 O -0.081 6.081 17 C -0.465 4.465 18 H 0.109 0.891 19 C -0.166 4.166 20 N -0.499 5.499 21 Si 0.765 3.235 22 H -0.199 1.199 23 H -0.203 1.203 24 H -0.191 1.191 25 C -0.236 4.236 26 C -0.084 4.084 27 C -0.247 4.247 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.150 0.850 32 H 0.097 0.903 33 H 0.101 0.899 34 H 0.092 0.908 35 H 0.247 0.753 36 H 0.231 0.769 37 H 0.132 0.868 38 H 0.140 0.860 39 H 0.079 0.921 40 H 0.148 0.852 41 H 0.140 0.860 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -26.045 4.015 0.826 26.365 hybrid contribution -1.036 -0.373 0.552 1.232 sum -27.080 3.642 1.377 27.359 Atomic orbital electron populations 1.20805 0.90146 1.03259 1.02857 1.20001 0.96399 0.92209 0.93551 1.21715 0.94715 0.98552 1.08533 1.21201 0.90803 0.93445 0.91754 1.20738 1.00742 0.91517 1.03237 1.67539 1.39316 0.96418 1.15789 1.18087 0.87176 0.85902 0.92923 1.42736 1.06326 1.07325 1.75590 1.16038 0.80824 0.85122 0.79456 1.91080 1.66761 1.27958 1.51917 1.42342 1.05433 1.07265 1.77027 1.16995 0.79675 1.02586 1.04527 1.20296 0.93280 0.99351 0.98593 1.19962 0.92642 1.01603 1.05473 1.19412 0.85090 0.93006 0.93425 1.83993 1.12843 1.54819 1.56450 1.21319 0.90461 1.19947 1.14773 0.89083 1.25279 0.95416 0.98037 0.97853 1.70049 1.06560 1.38664 1.34603 0.85720 0.78912 0.79662 0.79212 1.19919 1.20293 1.19144 1.21087 0.93468 1.02756 1.06280 1.20742 0.93562 0.97316 0.96791 1.21198 0.92208 0.99435 1.11883 0.90499 0.91087 0.90954 0.85017 0.90271 0.89916 0.90795 0.75292 0.76912 0.86771 0.86042 0.92089 0.85200 0.86027 0.84945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.58 10.06 36.01 0.36 -0.21 16 2 C -0.01 -0.12 5.91 -104.36 -0.62 -0.73 16 3 C -0.21 -2.02 9.44 -39.42 -0.37 -2.39 16 4 C 0.17 2.05 6.78 -82.61 -0.56 1.49 16 5 C -0.11 -1.07 10.17 36.01 0.37 -0.70 16 6 N -0.47 -7.30 7.80 -8.60 -0.07 -7.37 16 7 C 0.39 5.00 7.42 -154.73 -1.15 3.86 16 8 N -0.67 -7.71 5.39 -15.81 -0.09 -7.80 16 9 C 0.69 10.73 8.26 -86.91 -0.72 10.01 16 10 O -0.51 -10.35 12.28 5.29 0.07 -10.29 16 11 N -0.67 -9.46 5.35 -14.18 -0.08 -9.53 16 12 C 0.05 1.00 6.28 -83.62 -0.53 0.47 16 13 C -0.09 -1.68 9.96 -39.41 -0.39 -2.07 16 14 C -0.18 -3.73 9.99 -39.42 -0.39 -4.13 16 15 C 0.14 3.58 6.65 -39.09 -0.26 3.32 16 16 O -0.18 -5.15 9.76 -0.06 0.00 -5.15 16 17 C -0.39 -11.09 9.44 30.88 0.29 -10.80 16 18 H 0.09 2.43 5.29 -52.49 -0.28 2.15 16 19 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 20 N -0.86 -25.66 13.67 55.48 0.76 -24.91 16 21 Si 0.94 21.04 29.55 -169.99 -5.02 16.02 16 22 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 23 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 24 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 25 C -0.22 -5.01 9.13 -39.42 -0.36 -5.37 16 26 C -0.06 -1.34 8.65 -39.42 -0.34 -1.68 16 27 C -0.22 -2.07 9.64 -39.24 -0.38 -2.45 16 28 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.29 8.10 -51.93 -0.42 -0.13 16 30 H 0.07 0.30 8.10 -51.93 -0.42 -0.12 16 31 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 32 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.07 0.54 8.07 -51.93 -0.42 0.12 16 35 H 0.41 2.81 8.73 -40.82 -0.36 2.46 16 36 H 0.40 3.82 8.84 -40.82 -0.36 3.46 16 37 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 38 H 0.12 2.42 8.06 -52.49 -0.42 2.00 16 39 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 40 H 0.13 3.05 5.71 -52.49 -0.30 2.75 16 41 H 0.12 2.57 6.41 -52.48 -0.34 2.23 16 42 H 0.13 0.81 8.06 -52.48 -0.42 0.39 16 LS Contribution 362.60 15.07 5.46 5.46 Total: -1.00 -36.75 362.60 -9.09 -45.84 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -4.99 Total: 8.13 kcal Atomic # 6 Polarization: -5.27 SS G_CDS: -5.14 Total: -10.41 kcal Atomic # 7 Polarization: -50.14 SS G_CDS: 0.53 Total: -49.61 kcal Atomic # 8 Polarization: -15.50 SS G_CDS: 0.06 Total: -15.44 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -36.75 -9.09 -45.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320245345.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.432 kcal (2) G-P(sol) polarization free energy of solvation -36.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds