Wall clock time and date at job start Tue Mar 31 2020 14:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38847 * 120.74982 * 2 1 4 4 C 1.38062 * 119.30680 * 179.97438 * 3 2 1 5 5 C 1.50705 * 119.56942 * 179.97438 * 4 3 2 6 6 N 1.31942 * 120.85101 * 0.25198 * 4 3 2 7 7 C 1.32350 * 121.63850 * 359.47930 * 6 4 3 8 8 N 1.39374 * 119.70342 * 180.26813 * 7 6 4 9 9 C 1.34782 * 119.99710 * 354.88057 * 8 7 6 10 10 O 1.21584 * 119.99714 * 5.06880 * 9 8 7 11 11 N 1.34776 * 119.99938 * 185.06369 * 9 8 7 12 12 C 1.40018 * 119.99862 * 185.17161 * 11 9 8 13 13 C 1.38917 * 119.99479 * 213.09450 * 12 11 9 14 14 C 1.38016 * 119.99285 * 179.71861 * 13 12 11 15 15 C 1.38898 * 119.99931 * 0.54914 * 14 13 12 16 16 O 1.35791 * 119.99570 * 179.70009 * 15 14 13 17 17 C 1.34823 * 116.99649 * 185.84326 * 16 15 14 18 18 H 1.07994 * 119.99775 * 5.43094 * 17 16 15 19 19 C 1.38626 * 119.99551 * 185.43251 * 17 16 15 20 20 N 1.31582 * 120.00212 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 119.99796 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47361 * 90.00294 * 21 19 17 23 23 H 1.48506 * 109.47099 * 210.00401 * 21 19 17 24 24 H 1.48503 * 109.47202 * 329.99966 * 21 19 17 25 25 C 1.38905 * 120.00767 * 359.72608 * 15 14 13 26 26 C 1.38004 * 119.99584 * 359.97438 * 25 15 14 27 27 C 1.38343 * 120.74968 * 179.97438 * 2 1 3 28 28 H 1.09004 * 109.47807 * 89.99884 * 1 2 3 29 29 H 1.09004 * 109.47365 * 209.99895 * 1 2 3 30 30 H 1.09005 * 109.47137 * 329.99854 * 1 2 3 31 31 H 1.07997 * 120.34639 * 359.95753 * 3 2 1 32 32 H 1.09000 * 109.47158 * 90.00380 * 5 4 3 33 33 H 1.09006 * 109.46726 * 209.99374 * 5 4 3 34 34 H 1.08993 * 109.47128 * 329.99390 * 5 4 3 35 35 H 0.96994 * 120.00543 * 174.88871 * 8 7 6 36 36 H 0.96999 * 120.00140 * 5.16613 * 11 9 8 37 37 H 1.07999 * 120.00360 * 359.97438 * 13 12 11 38 38 H 1.07995 * 119.99666 * 180.27140 * 14 13 12 39 39 H 0.96995 * 119.99831 * 180.02562 * 20 19 17 40 40 H 1.07999 * 120.00170 * 179.97438 * 25 15 14 41 41 H 1.08004 * 119.99685 * 179.97438 * 26 25 15 42 42 H 1.08006 * 120.45373 * 0.03393 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1933 0.0000 4 6 3.5971 1.1585 0.0005 5 6 4.3736 2.4501 0.0000 6 7 4.2450 0.0091 -0.0039 7 6 3.6043 -1.1490 0.0012 8 7 4.3293 -2.3393 0.0018 9 6 5.6724 -2.3103 -0.1069 10 8 6.2589 -1.2453 -0.1127 11 7 6.3652 -3.4619 -0.2091 12 6 7.7652 -3.4386 -0.2129 13 6 8.4733 -4.3747 -0.9559 14 6 9.8532 -4.3481 -0.9643 15 6 10.5339 -3.3925 -0.2208 16 8 11.8916 -3.3702 -0.2242 17 6 12.4915 -2.4980 0.6106 18 1 11.8992 -1.9205 1.3049 19 6 13.8686 -2.3424 0.5777 20 7 14.5902 -3.0456 -0.2686 21 14 14.6999 -1.1344 1.7349 22 1 15.0575 -1.8262 2.9993 23 1 15.9309 -0.6038 1.0957 24 1 13.7724 -0.0128 2.0295 25 6 9.8260 -2.4601 0.5268 26 6 8.4461 -2.4827 0.5303 27 6 2.2143 -1.1889 0.0005 28 1 -0.3635 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5139 31 1 1.6949 2.1387 -0.0007 32 1 4.5604 2.7622 1.0275 33 1 5.3238 2.3025 -0.5134 34 1 3.7983 3.2196 -0.5147 35 1 3.8674 -3.1886 0.0803 36 1 5.8940 -4.3067 -0.2799 37 1 7.9441 -5.1206 -1.5303 38 1 10.4037 -5.0730 -1.5454 39 1 15.5538 -2.9370 -0.2913 40 1 10.3553 -1.7174 1.1052 41 1 7.8956 -1.7580 1.1118 42 1 1.6941 -2.1354 0.0004 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320245345.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:41 Heat of formation + Delta-G solvation = -1.405021 kcal Electronic energy + Delta-G solvation = -26055.572958 eV Core-core repulsion = 22194.137306 eV Total energy + Delta-G solvation = -3861.435652 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.10880 -41.09572 -40.30776 -38.34365 -36.21713 -35.46203 -34.96370 -34.16976 -32.31405 -31.85970 -29.59329 -28.77675 -28.13023 -27.26039 -24.67096 -23.81374 -23.09766 -22.51436 -21.32796 -20.07884 -19.51692 -19.11821 -18.50469 -17.45081 -17.00567 -16.82805 -16.78381 -16.30911 -16.11208 -15.57870 -15.43059 -15.36659 -15.22755 -14.67101 -14.57662 -14.17674 -14.07590 -13.69940 -13.61358 -13.46369 -13.31390 -13.21781 -13.16858 -13.09066 -12.68889 -12.52195 -12.47404 -12.14301 -11.56356 -11.54769 -11.31835 -11.05486 -10.56154 -10.33212 -10.07760 -9.82903 -9.23354 -8.56541 -8.47243 -6.13473 0.13561 0.38706 0.52849 0.60578 1.33723 1.34374 1.42969 1.51343 2.04375 2.17744 2.81257 2.89278 2.94029 3.16397 3.48769 3.52722 3.76531 4.02840 4.09036 4.11670 4.20225 4.28165 4.48268 4.56941 4.64064 4.64913 4.68997 4.74188 4.80813 4.86858 4.95034 5.05340 5.07559 5.11723 5.26642 5.32715 5.34538 5.40955 5.46009 5.58400 5.70335 5.82451 5.92878 6.02212 6.16902 6.75707 6.97637 7.26169 7.53220 7.77155 8.75664 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.019421 B = 0.002373 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.406705 B =11794.382949 C =13005.663338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.016 4.016 3 C -0.205 4.205 4 C 0.134 3.866 5 C -0.102 4.102 6 N -0.529 5.529 7 C 0.357 3.643 8 N -0.652 5.652 9 C 0.685 3.315 10 O -0.561 6.561 11 N -0.656 5.656 12 C 0.084 3.916 13 C -0.077 4.077 14 C -0.177 4.177 15 C 0.105 3.895 16 O -0.227 6.227 17 C -0.412 4.412 18 H 0.095 0.905 19 C -0.021 4.021 20 N -0.917 5.917 21 Si 1.016 2.984 22 H -0.261 1.261 23 H -0.268 1.268 24 H -0.259 1.259 25 C -0.226 4.226 26 C -0.076 4.076 27 C -0.209 4.209 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.160 0.840 32 H 0.081 0.919 33 H 0.051 0.949 34 H 0.103 0.897 35 H 0.434 0.566 36 H 0.424 0.576 37 H 0.170 0.830 38 H 0.132 0.868 39 H 0.273 0.727 40 H 0.114 0.886 41 H 0.116 0.884 42 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.712 2.715 1.153 32.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.024 4.024 3 C -0.226 4.226 4 C -0.004 4.004 5 C -0.159 4.159 6 N -0.246 5.246 7 C 0.126 3.874 8 N -0.303 5.303 9 C 0.385 3.615 10 O -0.433 6.433 11 N -0.307 5.307 12 C -0.010 4.010 13 C -0.097 4.097 14 C -0.196 4.196 15 C 0.054 3.946 16 O -0.133 6.133 17 C -0.488 4.488 18 H 0.112 0.888 19 C -0.219 4.219 20 N -0.555 5.555 21 Si 0.835 3.165 22 H -0.185 1.185 23 H -0.193 1.193 24 H -0.183 1.183 25 C -0.246 4.246 26 C -0.097 4.097 27 C -0.232 4.232 28 H 0.107 0.893 29 H 0.104 0.896 30 H 0.102 0.898 31 H 0.177 0.823 32 H 0.100 0.900 33 H 0.070 0.930 34 H 0.121 0.879 35 H 0.274 0.726 36 H 0.263 0.737 37 H 0.187 0.813 38 H 0.150 0.850 39 H 0.082 0.918 40 H 0.132 0.868 41 H 0.134 0.866 42 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -30.885 3.451 0.954 31.092 hybrid contribution -0.067 -0.236 0.453 0.515 sum -30.952 3.215 1.407 31.150 Atomic orbital electron populations 1.20884 0.87121 1.04662 1.03998 1.20519 0.98418 0.91494 0.91997 1.22039 0.93588 1.00436 1.06547 1.21535 0.92399 0.93108 0.93340 1.20755 0.99691 0.92062 1.03398 1.67381 1.41689 0.98089 1.17416 1.18477 0.88587 0.85481 0.94903 1.42397 1.04655 1.08457 1.74766 1.16241 0.82056 0.84445 0.78742 1.91068 1.68306 1.29938 1.54019 1.42088 1.03662 1.08486 1.76501 1.17097 0.81760 1.00476 1.01692 1.20730 0.91841 0.99601 0.97516 1.20321 0.94220 1.00614 1.04472 1.19931 0.84245 0.94930 0.95469 1.83949 1.14863 1.56393 1.58122 1.21727 0.91285 1.20301 1.15515 0.88764 1.26521 0.95694 0.99967 0.99712 1.70177 1.06985 1.41182 1.37184 0.84631 0.77732 0.77078 0.77052 1.18526 1.19285 1.18334 1.21045 0.94527 1.02556 1.06423 1.20754 0.92595 0.98451 0.97859 1.21564 0.90624 1.01438 1.09565 0.89270 0.89565 0.89795 0.82277 0.90012 0.92951 0.87870 0.72551 0.73668 0.81303 0.85049 0.91787 0.86825 0.86585 0.81355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.60 10.06 71.24 0.72 0.12 16 2 C -0.02 -0.22 5.91 -19.69 -0.12 -0.34 16 3 C -0.21 -3.39 9.44 22.37 0.21 -3.18 16 4 C 0.13 3.26 6.78 42.50 0.29 3.54 16 5 C -0.10 -2.12 10.17 71.24 0.72 -1.39 16 6 N -0.53 -16.39 7.80 -181.13 -1.41 -17.80 16 7 C 0.36 8.58 7.42 132.93 0.99 9.56 16 8 N -0.65 -13.53 5.39 -322.20 -1.74 -15.26 16 9 C 0.69 20.51 8.26 179.05 1.48 21.99 16 10 O -0.56 -23.21 12.28 -3.98 -0.05 -23.26 16 11 N -0.66 -16.57 5.35 -317.05 -1.70 -18.27 16 12 C 0.08 2.91 6.28 38.16 0.24 3.15 16 13 C -0.08 -2.50 9.96 22.38 0.22 -2.27 16 14 C -0.18 -7.40 9.99 22.38 0.22 -7.18 16 15 C 0.10 5.43 6.65 22.59 0.15 5.58 16 16 O -0.23 -13.99 9.76 -23.12 -0.23 -14.21 16 17 C -0.41 -25.00 9.44 67.91 0.64 -24.36 16 18 H 0.10 5.40 5.29 -2.91 -0.02 5.38 16 19 C -0.02 -1.25 5.49 84.82 0.47 -0.78 16 20 N -0.92 -57.28 13.67 21.61 0.30 -56.98 16 21 Si 1.02 44.77 29.55 68.60 2.03 46.80 16 22 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 23 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 24 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 25 C -0.23 -11.03 9.13 22.37 0.20 -10.82 16 26 C -0.08 -3.24 8.65 22.38 0.19 -3.05 16 27 C -0.21 -3.16 9.64 22.49 0.22 -2.95 16 28 H 0.09 0.34 8.14 -2.38 -0.02 0.32 16 29 H 0.09 0.25 8.10 -2.38 -0.02 0.23 16 30 H 0.08 0.31 8.10 -2.38 -0.02 0.29 16 31 H 0.16 1.63 8.06 -2.91 -0.02 1.61 16 32 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.05 1.38 8.14 -2.38 -0.02 1.36 16 34 H 0.10 1.41 8.07 -2.39 -0.02 1.39 16 35 H 0.43 4.36 8.73 -92.71 -0.81 3.55 16 36 H 0.42 6.22 8.84 -92.71 -0.82 5.40 16 37 H 0.17 3.72 8.06 -2.91 -0.02 3.70 16 38 H 0.13 5.19 8.06 -2.91 -0.02 5.17 16 39 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 40 H 0.11 5.78 5.71 -2.91 -0.02 5.76 16 41 H 0.12 5.09 6.41 -2.91 -0.02 5.07 16 42 H 0.17 1.20 8.06 -2.91 -0.02 1.18 16 Total: -1.00 -88.99 362.60 3.51 -85.48 By element: Atomic # 1 Polarization: 26.42 SS G_CDS: -0.54 Total: 25.88 kcal Atomic # 6 Polarization: -19.22 SS G_CDS: 6.85 Total: -12.38 kcal Atomic # 7 Polarization: -103.77 SS G_CDS: -4.55 Total: -108.32 kcal Atomic # 8 Polarization: -37.20 SS G_CDS: -0.27 Total: -37.47 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -88.99 3.51 -85.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320245345.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.073 kcal (2) G-P(sol) polarization free energy of solvation -88.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds