Wall clock time and date at job start Tue Mar 31 2020 16:25:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47466 * 2 1 4 4 C 1.38235 * 120.00282 * 269.72898 * 3 2 1 5 5 C 1.38231 * 120.00276 * 179.76303 * 4 3 2 6 6 C 1.38233 * 119.99729 * 0.48568 * 5 4 3 7 7 C 1.50701 * 120.00070 * 179.76597 * 6 5 4 8 8 H 1.09001 * 109.47445 * 200.02296 * 7 6 5 9 9 N 1.46496 * 109.47229 * 320.02505 * 7 6 5 10 10 C 1.34783 * 120.00088 * 205.00112 * 9 7 6 11 11 O 1.21687 * 119.99732 * 359.97438 * 10 9 7 12 12 C 1.46368 * 120.00048 * 179.97438 * 10 9 7 13 13 H 1.08005 * 120.00025 * 359.97438 * 12 10 9 14 14 C 1.40051 * 119.99885 * 179.97438 * 12 10 9 15 15 N 1.30661 * 120.00054 * 0.02562 * 14 12 10 16 16 Si 1.86802 * 119.99805 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47384 * 90.00079 * 16 14 12 18 18 H 1.48501 * 109.46841 * 210.00331 * 16 14 12 19 19 H 1.48507 * 109.46980 * 329.99907 * 16 14 12 20 20 C 1.50698 * 109.46958 * 80.02353 * 7 6 5 21 21 C 1.38264 * 119.99129 * 100.00036 * 20 7 6 22 22 C 1.38223 * 120.05684 * 180.02562 * 21 20 7 23 23 C 1.38223 * 120.02372 * 359.95904 * 22 21 20 24 24 C 1.38440 * 119.97367 * 0.02562 * 23 22 21 25 25 F 1.35094 * 120.02554 * 179.97438 * 24 23 22 26 26 C 1.38182 * 119.98910 * 279.72866 * 20 7 6 27 27 C 1.38239 * 120.00062 * 359.79046 * 6 5 4 28 28 C 1.38230 * 119.99880 * 359.95582 * 27 6 5 29 29 H 1.09002 * 109.47153 * 59.99773 * 1 2 3 30 30 H 1.09001 * 109.46832 * 299.99964 * 1 2 3 31 31 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47153 * 120.00227 * 2 1 3 33 33 H 1.08998 * 109.47533 * 239.99856 * 2 1 3 34 34 H 1.08008 * 119.99550 * 359.97438 * 4 3 2 35 35 H 1.07993 * 120.00327 * 180.25079 * 5 4 3 36 36 H 0.96996 * 119.99744 * 24.99370 * 9 7 6 37 37 H 0.97007 * 119.99878 * 179.97438 * 15 14 12 38 38 H 1.08004 * 119.97102 * 359.97438 * 21 20 7 39 39 H 1.08001 * 119.99050 * 179.97438 * 22 21 20 40 40 H 1.08001 * 120.01344 * 180.02562 * 23 22 21 41 41 H 1.08002 * 120.00943 * 359.97438 * 26 20 7 42 42 H 1.08008 * 119.99983 * 179.97438 * 27 6 5 43 43 H 1.08007 * 119.99843 * 180.02562 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2682 2.0706 -1.1971 5 6 2.7243 3.3754 -1.1971 6 6 2.9543 4.0272 0.0000 7 6 3.4567 5.4480 0.0001 8 1 3.9092 5.6734 0.9658 9 7 4.4564 5.6125 -1.0580 10 6 5.3914 6.5781 -0.9575 11 8 5.4048 7.3134 0.0120 12 6 6.3907 6.7421 -2.0144 13 1 6.3790 6.0891 -2.8746 14 6 7.3619 7.7458 -1.9102 15 7 7.3763 8.5354 -0.8693 16 14 8.6367 7.9555 -3.2594 17 1 8.1242 8.9029 -4.2817 18 1 9.8928 8.4899 -2.6747 19 1 8.9064 6.6404 -3.8943 20 6 2.3049 6.3880 -0.2466 21 6 1.7134 7.0494 0.8138 22 6 0.6565 7.9115 0.5892 23 6 0.1903 8.1140 -0.6962 24 6 0.7820 7.4526 -1.7588 25 9 0.3269 7.6493 -3.0154 26 6 1.8440 6.5929 -1.5330 27 6 2.7240 3.3755 1.1972 28 6 2.2628 2.0724 1.1971 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 2.0927 1.5598 -2.1325 35 1 2.9047 3.8844 -2.1324 36 1 4.4455 5.0265 -1.8309 37 1 8.0492 9.2303 -0.7969 38 1 2.0769 6.8917 1.8185 39 1 0.1950 8.4272 1.4183 40 1 -0.6352 8.7879 -0.8716 41 1 2.3093 6.0799 -2.3617 42 1 2.9041 3.8846 2.1326 43 1 2.0825 1.5633 2.1325 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320371459.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:18 Heat of formation + Delta-G solvation = -46.703813 kcal Electronic energy + Delta-G solvation = -27104.848507 eV Core-core repulsion = 23221.528591 eV Total energy + Delta-G solvation = -3883.319916 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.138 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -48.59186 -39.96368 -38.60763 -37.13858 -34.98359 -33.15343 -32.35639 -30.96158 -30.52398 -30.20113 -29.29939 -26.69488 -25.22305 -23.34239 -22.83782 -22.14788 -21.44170 -20.46106 -19.37988 -17.62158 -17.12613 -16.13695 -16.00824 -15.80673 -15.44173 -15.29781 -15.21127 -15.02581 -14.33253 -14.06368 -13.95717 -13.64948 -13.52596 -13.31896 -13.15854 -13.03471 -12.72174 -12.34386 -12.09192 -11.98990 -11.79789 -11.57759 -11.37036 -11.23904 -11.16629 -10.98967 -10.91849 -10.72500 -10.60538 -10.48266 -10.23772 -8.89256 -8.80511 -8.69649 -8.43919 -8.29253 -7.69294 -7.63543 -6.21262 -4.67008 1.34395 1.50749 1.54708 1.60283 3.13345 3.20310 3.23306 3.80643 3.92704 4.08901 4.52738 4.56664 4.64194 4.71955 4.79904 5.00224 5.09380 5.11076 5.17013 5.18790 5.23770 5.35499 5.42398 5.54017 5.57823 5.60211 5.70952 5.74358 5.83062 5.87555 5.95590 6.02136 6.12668 6.17213 6.23452 6.34543 6.42169 6.52530 6.58884 6.67582 6.74047 6.90843 7.10441 7.21862 7.41033 7.82933 8.00091 8.27909 9.00103 9.44706 10.56145 10.74193 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.009433 B = 0.004203 C = 0.003371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2967.609464 B = 6659.757354 C = 8303.972278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.083 4.083 3 C -0.090 4.090 4 C -0.116 4.116 5 C -0.105 4.105 6 C -0.076 4.076 7 C 0.229 3.771 8 H 0.097 0.903 9 N -0.756 5.756 10 C 0.557 3.443 11 O -0.574 6.574 12 C -0.544 4.544 13 H 0.067 0.933 14 C 0.089 3.911 15 N -0.766 5.766 16 Si 0.906 3.094 17 H -0.272 1.272 18 H -0.279 1.279 19 H -0.265 1.265 20 C -0.040 4.040 21 C -0.116 4.116 22 C -0.095 4.095 23 C -0.164 4.164 24 C 0.091 3.909 25 F -0.146 7.146 26 C -0.129 4.129 27 C -0.105 4.105 28 C -0.117 4.117 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.119 0.881 35 H 0.122 0.878 36 H 0.381 0.619 37 H 0.268 0.732 38 H 0.126 0.874 39 H 0.128 0.872 40 H 0.128 0.872 41 H 0.131 0.869 42 H 0.123 0.877 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.752 -11.764 1.949 18.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.120 4.120 3 C -0.090 4.090 4 C -0.134 4.134 5 C -0.123 4.123 6 C -0.076 4.076 7 C 0.122 3.878 8 H 0.115 0.885 9 N -0.412 5.412 10 C 0.361 3.639 11 O -0.456 6.456 12 C -0.581 4.581 13 H 0.085 0.915 14 C -0.131 4.131 15 N -0.394 5.394 16 Si 0.731 3.269 17 H -0.197 1.197 18 H -0.204 1.204 19 H -0.189 1.189 20 C -0.042 4.042 21 C -0.134 4.134 22 C -0.113 4.113 23 C -0.183 4.183 24 C 0.072 3.928 25 F -0.125 7.125 26 C -0.148 4.148 27 C -0.124 4.124 28 C -0.135 4.135 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.137 0.863 35 H 0.140 0.860 36 H 0.214 0.786 37 H 0.079 0.921 38 H 0.144 0.856 39 H 0.146 0.854 40 H 0.146 0.854 41 H 0.149 0.851 42 H 0.141 0.859 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -13.631 -11.044 2.719 17.753 hybrid contribution 0.596 0.056 -1.354 1.481 sum -13.035 -10.989 1.365 17.103 Atomic orbital electron populations 1.21747 0.94922 1.01403 1.02279 1.20510 0.96013 0.92904 1.02609 1.19833 0.99806 0.96109 0.93301 1.20946 1.00278 0.94765 0.97391 1.20961 0.98830 0.94668 0.97822 1.19990 0.98756 0.95345 0.93527 1.18305 0.86431 0.87475 0.95565 0.88480 1.46366 1.32596 1.39274 1.22931 1.18229 0.79805 0.78430 0.87427 1.90604 1.74898 1.45816 1.34315 1.20847 1.13314 1.17744 1.06153 0.91461 1.25681 0.97411 0.94426 0.95616 1.70009 1.29932 1.13529 1.25948 0.86391 0.79996 0.79211 0.81292 1.19739 1.20439 1.18888 1.20227 0.95289 0.96375 0.92284 1.21046 0.96175 0.97008 0.99197 1.20883 0.96579 0.97884 0.95946 1.21001 1.02472 1.02394 0.92452 1.17670 0.96422 0.99618 0.79117 1.91458 1.88303 1.94104 1.38593 1.20881 0.95935 0.99659 0.98328 1.20997 0.99160 0.94649 0.97554 1.20927 1.00459 0.94790 0.97343 0.92560 0.92582 0.92648 0.91246 0.91217 0.86315 0.86043 0.78619 0.92095 0.85589 0.85424 0.85413 0.85144 0.85903 0.86331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.89 37.16 0.37 -0.80 16 2 C -0.08 -0.73 6.06 -27.89 -0.17 -0.90 16 3 C -0.09 -1.04 5.13 -104.63 -0.54 -1.58 16 4 C -0.12 -1.42 9.70 -39.58 -0.38 -1.80 16 5 C -0.10 -1.47 8.86 -39.59 -0.35 -1.82 16 6 C -0.08 -1.16 4.94 -104.62 -0.52 -1.68 16 7 C 0.23 4.26 2.38 -70.24 -0.17 4.09 16 8 H 0.10 1.99 7.30 -51.93 -0.38 1.61 16 9 N -0.76 -16.27 4.25 -57.49 -0.24 -16.51 16 10 C 0.56 15.34 7.70 -12.99 -0.10 15.24 16 11 O -0.57 -17.95 14.68 5.20 0.08 -17.88 16 12 C -0.54 -15.13 9.54 -35.63 -0.34 -15.47 16 13 H 0.07 1.72 7.85 -52.48 -0.41 1.31 16 14 C 0.09 2.45 5.50 -17.37 -0.10 2.36 16 15 N -0.77 -22.74 11.83 55.55 0.66 -22.08 16 16 Si 0.91 20.11 29.56 -169.99 -5.02 15.09 16 17 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 18 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 19 H -0.26 -5.68 7.11 56.52 0.40 -5.28 16 20 C -0.04 -0.72 4.90 -104.63 -0.51 -1.23 16 21 C -0.12 -1.88 9.67 -39.58 -0.38 -2.26 16 22 C -0.09 -1.36 10.04 -39.59 -0.40 -1.76 16 23 C -0.16 -2.45 10.03 -39.51 -0.40 -2.85 16 24 C 0.09 1.54 7.30 -39.42 -0.29 1.25 16 25 F -0.15 -2.46 17.27 2.25 0.04 -2.43 16 26 C -0.13 -2.30 9.11 -39.51 -0.36 -2.66 16 27 C -0.11 -1.43 9.67 -39.58 -0.38 -1.82 16 28 C -0.12 -1.39 9.70 -39.59 -0.38 -1.78 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 33 H 0.07 0.57 8.08 -51.93 -0.42 0.15 16 34 H 0.12 1.22 8.06 -52.48 -0.42 0.79 16 35 H 0.12 1.65 6.49 -52.49 -0.34 1.31 16 36 H 0.38 7.31 6.85 -40.82 -0.28 7.03 16 37 H 0.27 7.26 8.29 -40.82 -0.34 6.92 16 38 H 0.13 1.84 8.04 -52.48 -0.42 1.42 16 39 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 40 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 41 H 0.13 2.27 7.28 -52.49 -0.38 1.89 16 42 H 0.12 1.52 8.04 -52.48 -0.42 1.10 16 43 H 0.12 1.15 8.06 -52.48 -0.42 0.72 16 LS Contribution 372.00 15.07 5.61 5.61 Total: -1.00 -33.74 372.00 -9.86 -43.60 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: -5.57 Total: 10.07 kcal Atomic # 6 Polarization: -10.07 SS G_CDS: -5.40 Total: -15.46 kcal Atomic # 7 Polarization: -39.01 SS G_CDS: 0.41 Total: -38.59 kcal Atomic # 8 Polarization: -17.95 SS G_CDS: 0.08 Total: -17.88 kcal Atomic # 9 Polarization: -2.46 SS G_CDS: 0.04 Total: -2.43 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.74 -9.86 -43.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320371459.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.106 kcal (2) G-P(sol) polarization free energy of solvation -33.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds