Wall clock time and date at job start Tue Mar 31 2020 16:25:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47466 * 2 1 4 4 C 1.38235 * 120.00282 * 269.72898 * 3 2 1 5 5 C 1.38231 * 120.00276 * 179.76303 * 4 3 2 6 6 C 1.38233 * 119.99729 * 0.48568 * 5 4 3 7 7 C 1.50701 * 120.00070 * 179.76597 * 6 5 4 8 8 H 1.09001 * 109.47445 * 200.02296 * 7 6 5 9 9 N 1.46496 * 109.47229 * 320.02505 * 7 6 5 10 10 C 1.34783 * 120.00088 * 205.00112 * 9 7 6 11 11 O 1.21687 * 119.99732 * 359.97438 * 10 9 7 12 12 C 1.46368 * 120.00048 * 179.97438 * 10 9 7 13 13 H 1.08005 * 120.00025 * 359.97438 * 12 10 9 14 14 C 1.40051 * 119.99885 * 179.97438 * 12 10 9 15 15 N 1.30661 * 120.00054 * 0.02562 * 14 12 10 16 16 Si 1.86802 * 119.99805 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47384 * 90.00079 * 16 14 12 18 18 H 1.48501 * 109.46841 * 210.00331 * 16 14 12 19 19 H 1.48507 * 109.46980 * 329.99907 * 16 14 12 20 20 C 1.50698 * 109.46958 * 80.02353 * 7 6 5 21 21 C 1.38264 * 119.99129 * 100.00036 * 20 7 6 22 22 C 1.38223 * 120.05684 * 180.02562 * 21 20 7 23 23 C 1.38223 * 120.02372 * 359.95904 * 22 21 20 24 24 C 1.38440 * 119.97367 * 0.02562 * 23 22 21 25 25 F 1.35094 * 120.02554 * 179.97438 * 24 23 22 26 26 C 1.38182 * 119.98910 * 279.72866 * 20 7 6 27 27 C 1.38239 * 120.00062 * 359.79046 * 6 5 4 28 28 C 1.38230 * 119.99880 * 359.95582 * 27 6 5 29 29 H 1.09002 * 109.47153 * 59.99773 * 1 2 3 30 30 H 1.09001 * 109.46832 * 299.99964 * 1 2 3 31 31 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47153 * 120.00227 * 2 1 3 33 33 H 1.08998 * 109.47533 * 239.99856 * 2 1 3 34 34 H 1.08008 * 119.99550 * 359.97438 * 4 3 2 35 35 H 1.07993 * 120.00327 * 180.25079 * 5 4 3 36 36 H 0.96996 * 119.99744 * 24.99370 * 9 7 6 37 37 H 0.97007 * 119.99878 * 179.97438 * 15 14 12 38 38 H 1.08004 * 119.97102 * 359.97438 * 21 20 7 39 39 H 1.08001 * 119.99050 * 179.97438 * 22 21 20 40 40 H 1.08001 * 120.01344 * 180.02562 * 23 22 21 41 41 H 1.08002 * 120.00943 * 359.97438 * 26 20 7 42 42 H 1.08008 * 119.99983 * 179.97438 * 27 6 5 43 43 H 1.08007 * 119.99843 * 180.02562 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2682 2.0706 -1.1971 5 6 2.7243 3.3754 -1.1971 6 6 2.9543 4.0272 0.0000 7 6 3.4567 5.4480 0.0001 8 1 3.9092 5.6734 0.9658 9 7 4.4564 5.6125 -1.0580 10 6 5.3914 6.5781 -0.9575 11 8 5.4048 7.3134 0.0120 12 6 6.3907 6.7421 -2.0144 13 1 6.3790 6.0891 -2.8746 14 6 7.3619 7.7458 -1.9102 15 7 7.3763 8.5354 -0.8693 16 14 8.6367 7.9555 -3.2594 17 1 8.1242 8.9029 -4.2817 18 1 9.8928 8.4899 -2.6747 19 1 8.9064 6.6404 -3.8943 20 6 2.3049 6.3880 -0.2466 21 6 1.7134 7.0494 0.8138 22 6 0.6565 7.9115 0.5892 23 6 0.1903 8.1140 -0.6962 24 6 0.7820 7.4526 -1.7588 25 9 0.3269 7.6493 -3.0154 26 6 1.8440 6.5929 -1.5330 27 6 2.7240 3.3755 1.1972 28 6 2.2628 2.0724 1.1971 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 2.0927 1.5598 -2.1325 35 1 2.9047 3.8844 -2.1324 36 1 4.4455 5.0265 -1.8309 37 1 8.0492 9.2303 -0.7969 38 1 2.0769 6.8917 1.8185 39 1 0.1950 8.4272 1.4183 40 1 -0.6352 8.7879 -0.8716 41 1 2.3093 6.0799 -2.3617 42 1 2.9041 3.8846 2.1326 43 1 2.0825 1.5633 2.1325 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320371459.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:17 Heat of formation + Delta-G solvation = -64.901405 kcal Electronic energy + Delta-G solvation = -27105.637614 eV Core-core repulsion = 23221.528591 eV Total energy + Delta-G solvation = -3884.109023 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.138 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -49.91894 -41.22116 -39.76954 -38.99216 -36.34636 -34.69631 -34.13709 -32.24713 -31.85751 -31.45106 -30.36576 -28.54116 -26.66434 -24.32243 -23.99621 -23.32316 -22.77336 -21.75182 -20.97807 -19.46397 -18.42432 -17.63529 -17.46776 -17.12893 -17.02484 -16.60266 -16.37992 -16.17275 -15.73912 -15.68098 -15.19397 -14.78831 -14.56982 -14.54201 -14.36982 -14.25970 -14.11809 -13.76054 -13.60859 -13.28840 -13.12098 -12.82232 -12.78673 -12.64211 -12.58757 -12.50096 -12.12196 -12.05191 -12.00939 -11.68021 -11.62573 -10.94438 -10.06703 -9.83636 -9.82212 -9.64396 -9.54687 -9.40993 -8.29643 -6.86128 0.14755 0.24585 0.45273 0.50698 1.38371 1.39543 1.54352 2.22750 2.46467 2.59679 2.80808 3.07065 3.25543 3.59762 3.74064 3.79974 3.88315 3.95759 4.00483 4.12507 4.15544 4.28328 4.36413 4.40692 4.54466 4.56276 4.60290 4.72433 4.75123 4.88891 5.06433 5.08137 5.11095 5.13020 5.14721 5.22372 5.30759 5.33046 5.42304 5.50368 5.51991 5.65856 5.72949 5.86621 5.94691 6.10569 6.16948 6.26219 6.86439 7.49453 8.48372 8.66557 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.009433 B = 0.004203 C = 0.003371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2967.609464 B = 6659.757354 C = 8303.972278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.081 4.081 3 C -0.086 4.086 4 C -0.119 4.119 5 C -0.116 4.116 6 C -0.095 4.095 7 C 0.235 3.765 8 H 0.068 0.932 9 N -0.744 5.744 10 C 0.545 3.455 11 O -0.621 6.621 12 C -0.574 4.574 13 H 0.083 0.917 14 C 0.032 3.968 15 N -0.818 5.818 16 Si 0.993 3.007 17 H -0.264 1.264 18 H -0.272 1.272 19 H -0.250 1.250 20 C -0.059 4.059 21 C -0.131 4.131 22 C -0.086 4.086 23 C -0.159 4.159 24 C 0.075 3.925 25 F -0.148 7.148 26 C -0.148 4.148 27 C -0.115 4.115 28 C -0.116 4.116 29 H 0.049 0.951 30 H 0.052 0.948 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.140 0.860 35 H 0.117 0.883 36 H 0.391 0.609 37 H 0.274 0.726 38 H 0.135 0.865 39 H 0.168 0.832 40 H 0.160 0.840 41 H 0.123 0.877 42 H 0.127 0.873 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.853 -13.221 1.381 19.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.119 4.119 3 C -0.086 4.086 4 C -0.136 4.136 5 C -0.134 4.134 6 C -0.096 4.096 7 C 0.129 3.871 8 H 0.086 0.914 9 N -0.398 5.398 10 C 0.350 3.650 11 O -0.508 6.508 12 C -0.611 4.611 13 H 0.101 0.899 14 C -0.183 4.183 15 N -0.447 5.447 16 Si 0.812 3.188 17 H -0.189 1.189 18 H -0.196 1.196 19 H -0.173 1.173 20 C -0.061 4.061 21 C -0.149 4.149 22 C -0.103 4.103 23 C -0.178 4.178 24 C 0.056 3.944 25 F -0.127 7.127 26 C -0.167 4.167 27 C -0.134 4.134 28 C -0.134 4.134 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.091 0.909 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.158 0.842 35 H 0.135 0.865 36 H 0.226 0.774 37 H 0.084 0.916 38 H 0.153 0.847 39 H 0.185 0.815 40 H 0.178 0.822 41 H 0.141 0.859 42 H 0.145 0.855 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -14.775 -12.555 2.135 19.506 hybrid contribution 0.826 0.430 -1.117 1.454 sum -13.950 -12.125 1.017 18.511 Atomic orbital electron populations 1.21733 0.94178 1.02429 1.01828 1.20580 0.96507 0.90957 1.03818 1.20234 0.98199 0.97433 0.92713 1.21210 0.99594 0.93957 0.98880 1.21004 0.99603 0.95687 0.97143 1.19778 1.00998 0.93818 0.94975 1.18251 0.85830 0.90171 0.92832 0.91393 1.45978 1.32099 1.37806 1.23929 1.18489 0.80748 0.78892 0.86914 1.90553 1.76425 1.47867 1.35922 1.21393 1.14103 1.18688 1.06891 0.89863 1.26882 0.99676 0.93465 0.98326 1.70170 1.31345 1.14517 1.28669 0.85090 0.76462 0.79811 0.77388 1.18865 1.19639 1.17304 1.20231 0.95698 0.97131 0.93067 1.21342 0.96981 0.97341 0.99281 1.21318 0.95334 0.96642 0.97030 1.21402 1.02683 1.01815 0.91858 1.17889 0.96693 1.00151 0.79703 1.91444 1.88275 1.94142 1.38846 1.20895 0.96957 1.00730 0.98125 1.21147 0.99499 0.95635 0.97100 1.21229 0.99429 0.93941 0.98817 0.93196 0.92888 0.90920 0.89933 0.90193 0.84191 0.86485 0.77412 0.91621 0.84675 0.81484 0.82233 0.85877 0.85468 0.83722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 9.89 71.98 0.71 -1.20 16 2 C -0.08 -1.19 6.06 29.85 0.18 -1.01 16 3 C -0.09 -1.80 5.13 -19.87 -0.10 -1.90 16 4 C -0.12 -2.77 9.70 22.27 0.22 -2.56 16 5 C -0.12 -3.33 8.86 22.27 0.20 -3.13 16 6 C -0.10 -3.04 4.94 -19.86 -0.10 -3.14 16 7 C 0.24 9.29 2.38 43.50 0.10 9.39 16 8 H 0.07 3.03 7.30 -2.39 -0.02 3.01 16 9 N -0.74 -33.80 4.25 -454.01 -1.93 -35.73 16 10 C 0.55 31.55 7.70 86.36 0.67 32.21 16 11 O -0.62 -41.06 14.68 -4.31 -0.06 -41.13 16 12 C -0.57 -32.85 9.54 24.83 0.24 -32.61 16 13 H 0.08 4.31 7.85 -2.91 -0.02 4.29 16 14 C 0.03 1.80 5.50 85.31 0.47 2.26 16 15 N -0.82 -50.20 11.83 21.84 0.26 -49.95 16 16 Si 0.99 41.56 29.56 68.60 2.03 43.59 16 17 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 18 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 19 H -0.25 -9.74 7.11 99.48 0.71 -9.04 16 20 C -0.06 -2.24 4.90 -19.87 -0.10 -2.34 16 21 C -0.13 -4.31 9.67 22.27 0.22 -4.10 16 22 C -0.09 -2.32 10.04 22.26 0.22 -2.10 16 23 C -0.16 -4.49 10.03 22.31 0.22 -4.27 16 24 C 0.07 2.54 7.30 22.38 0.16 2.70 16 25 F -0.15 -5.01 17.27 44.97 0.78 -4.23 16 26 C -0.15 -5.50 9.11 22.31 0.20 -5.30 16 27 C -0.12 -3.17 9.67 22.27 0.22 -2.96 16 28 C -0.12 -2.59 9.70 22.27 0.22 -2.38 16 29 H 0.05 0.72 8.14 -2.39 -0.02 0.71 16 30 H 0.05 0.73 8.14 -2.39 -0.02 0.72 16 31 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 32 H 0.08 1.03 8.09 -2.39 -0.02 1.01 16 33 H 0.08 1.04 8.08 -2.39 -0.02 1.02 16 34 H 0.14 2.61 8.06 -2.91 -0.02 2.58 16 35 H 0.12 3.34 6.49 -2.91 -0.02 3.32 16 36 H 0.39 15.84 6.85 -92.71 -0.63 15.20 16 37 H 0.27 15.26 8.29 -92.70 -0.77 14.50 16 38 H 0.14 4.06 8.04 -2.91 -0.02 4.04 16 39 H 0.17 3.17 8.06 -2.91 -0.02 3.15 16 40 H 0.16 3.44 8.06 -2.91 -0.02 3.42 16 41 H 0.12 4.57 7.28 -2.91 -0.02 4.54 16 42 H 0.13 3.25 8.04 -2.91 -0.02 3.23 16 43 H 0.15 2.42 8.06 -2.91 -0.02 2.40 16 Total: -1.00 -76.62 372.00 5.41 -71.21 By element: Atomic # 1 Polarization: 38.24 SS G_CDS: 0.40 Total: 38.64 kcal Atomic # 6 Polarization: -26.35 SS G_CDS: 3.94 Total: -22.41 kcal Atomic # 7 Polarization: -84.01 SS G_CDS: -1.67 Total: -85.68 kcal Atomic # 8 Polarization: -41.06 SS G_CDS: -0.06 Total: -41.13 kcal Atomic # 9 Polarization: -5.01 SS G_CDS: 0.78 Total: -4.23 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.59 kcal Total: -76.62 5.41 -71.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320371459.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.306 kcal (2) G-P(sol) polarization free energy of solvation -76.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds