Wall clock time and date at job start Tue Mar 31 2020 16:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50699 * 109.47294 * 2 1 4 4 C 1.38238 * 120.00068 * 89.99507 * 3 2 1 5 5 C 1.38238 * 119.99787 * 179.97438 * 4 3 2 6 6 C 1.38226 * 120.00196 * 359.97438 * 5 4 3 7 7 C 1.50700 * 120.00158 * 179.97438 * 6 5 4 8 8 H 1.09001 * 109.47036 * 340.00667 * 7 6 5 9 9 N 1.46499 * 109.47380 * 220.00015 * 7 6 5 10 10 C 1.34779 * 119.99820 * 155.00106 * 9 7 6 11 11 O 1.21686 * 119.99861 * 359.97438 * 10 9 7 12 12 C 1.46373 * 119.99762 * 179.72395 * 10 9 7 13 13 H 1.08002 * 120.00044 * 353.86158 * 12 10 9 14 14 C 1.40053 * 120.00061 * 173.85735 * 12 10 9 15 15 N 1.30663 * 119.99640 * 6.10277 * 14 12 10 16 16 Si 1.86793 * 119.99905 * 186.09900 * 14 12 10 17 17 H 1.48499 * 109.46952 * 94.98765 * 16 14 12 18 18 H 1.48502 * 109.47010 * 214.98629 * 16 14 12 19 19 H 1.48496 * 109.47377 * 334.98690 * 16 14 12 20 20 C 1.50712 * 109.46831 * 99.99842 * 7 6 5 21 21 C 1.38264 * 119.98385 * 79.73314 * 20 7 6 22 22 C 1.38222 * 120.04783 * 179.72702 * 21 20 7 23 23 C 1.38215 * 120.02547 * 0.53939 * 22 21 20 24 24 C 1.38442 * 119.97574 * 359.73022 * 23 22 21 25 25 F 1.35094 * 120.02396 * 180.02562 * 24 23 22 26 26 C 1.38169 * 119.98791 * 259.99970 * 20 7 6 27 27 C 1.38238 * 120.00365 * 0.27295 * 6 5 4 28 28 C 1.38236 * 119.99365 * 359.51957 * 27 6 5 29 29 H 1.09001 * 109.46699 * 60.00234 * 1 2 3 30 30 H 1.08992 * 109.47143 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47053 * 300.00206 * 1 2 3 32 32 H 1.09000 * 109.47424 * 239.99986 * 2 1 3 33 33 H 1.09000 * 109.47214 * 119.99838 * 2 1 3 34 34 H 1.07997 * 119.99885 * 359.97438 * 4 3 2 35 35 H 1.08001 * 119.99285 * 180.02562 * 5 4 3 36 36 H 0.97003 * 120.00017 * 334.99711 * 9 7 6 37 37 H 0.97007 * 120.00283 * 179.97438 * 15 14 12 38 38 H 1.07999 * 119.97642 * 359.97213 * 21 20 7 39 39 H 1.08004 * 119.98943 * 180.27748 * 22 21 20 40 40 H 1.08001 * 120.01518 * 179.70693 * 23 22 21 41 41 H 1.08007 * 120.01284 * 0.02915 * 26 20 7 42 42 H 1.07998 * 120.00404 * 179.72321 * 27 6 5 43 43 H 1.08005 * 120.00247 * 180.27403 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2627 2.0725 1.1972 5 6 2.7241 3.3756 1.1971 6 6 2.9556 4.0268 0.0000 7 6 3.4579 5.4476 0.0000 8 1 3.2469 5.9076 0.9653 9 7 2.7847 6.2036 -1.0590 10 6 2.6644 7.5423 -0.9590 11 8 3.1147 8.1229 0.0110 12 6 1.9971 8.2984 -2.0199 13 1 1.6895 7.7995 -2.9271 14 6 1.7574 9.6688 -1.8587 15 7 2.2335 10.2971 -0.8166 16 14 0.7571 10.5983 -3.1333 17 1 -0.6620 10.6597 -2.7003 18 1 1.2920 11.9765 -3.2734 19 1 0.8461 9.8976 -4.4396 20 6 4.9449 5.4546 -0.2454 21 6 5.4338 5.3125 -1.5309 22 6 6.7972 5.3243 -1.7581 23 6 7.6736 5.4671 -0.6990 24 6 7.1854 5.6039 0.5893 25 9 8.0412 5.7441 1.6252 26 6 5.8192 5.5975 0.8150 27 6 2.7204 3.3769 -1.1972 28 6 2.2632 2.0723 -1.1971 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 2.0822 1.5635 2.1324 35 1 2.9044 3.8845 2.1325 36 1 2.4255 5.7408 -1.8321 37 1 2.0678 11.2463 -0.7050 38 1 4.7499 5.1961 -2.3585 39 1 7.1779 5.2178 -2.7632 40 1 8.7390 5.4716 -0.8762 41 1 5.4371 5.7037 1.8196 42 1 2.8970 3.8872 -2.1325 43 1 2.0836 1.5630 -2.1325 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320371470.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:23 Heat of formation + Delta-G solvation = -46.746051 kcal Electronic energy + Delta-G solvation = -26997.576816 eV Core-core repulsion = 23114.255068 eV Total energy + Delta-G solvation = -3883.321748 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.138 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -48.61325 -39.97184 -38.61042 -37.13702 -34.97979 -33.14183 -32.36283 -31.11067 -30.62444 -29.97941 -29.29987 -26.70123 -25.22170 -23.28436 -22.91693 -22.17223 -21.44718 -20.46711 -19.38295 -17.61975 -17.08234 -16.18208 -15.99842 -15.79626 -15.44276 -15.32425 -15.21017 -15.04026 -14.38214 -14.05163 -13.97039 -13.69263 -13.51791 -13.35168 -13.17293 -12.93117 -12.62078 -12.49541 -12.15017 -11.93236 -11.78697 -11.57723 -11.36530 -11.27533 -11.12264 -11.06777 -10.82601 -10.71285 -10.67223 -10.48513 -10.24170 -8.89810 -8.80366 -8.69830 -8.48282 -8.27200 -7.69738 -7.64004 -6.22837 -4.67488 1.34281 1.50410 1.53900 1.60063 3.12000 3.19446 3.22520 3.80437 3.92374 4.07649 4.43100 4.57104 4.69950 4.74322 4.80122 5.03896 5.07360 5.10821 5.14537 5.19696 5.23718 5.34485 5.43081 5.51836 5.59862 5.61153 5.69759 5.74162 5.81079 5.87816 5.96145 6.03836 6.11908 6.16016 6.22081 6.36577 6.40749 6.51488 6.61260 6.67304 6.72596 6.91858 7.10119 7.21288 7.40408 7.82266 7.98961 8.27297 8.99274 9.44132 10.55314 10.73335 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.007906 B = 0.004581 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3540.978667 B = 6110.286551 C = 8691.816001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.083 4.083 3 C -0.090 4.090 4 C -0.117 4.117 5 C -0.105 4.105 6 C -0.075 4.075 7 C 0.229 3.771 8 H 0.095 0.905 9 N -0.755 5.755 10 C 0.556 3.444 11 O -0.574 6.574 12 C -0.544 4.544 13 H 0.068 0.932 14 C 0.089 3.911 15 N -0.765 5.765 16 Si 0.906 3.094 17 H -0.273 1.273 18 H -0.279 1.279 19 H -0.265 1.265 20 C -0.039 4.039 21 C -0.106 4.106 22 C -0.095 4.095 23 C -0.164 4.164 24 C 0.092 3.908 25 F -0.146 7.146 26 C -0.139 4.139 27 C -0.104 4.104 28 C -0.116 4.116 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.119 0.881 35 H 0.122 0.878 36 H 0.381 0.619 37 H 0.268 0.732 38 H 0.125 0.875 39 H 0.128 0.872 40 H 0.128 0.872 41 H 0.131 0.869 42 H 0.123 0.877 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.177 -17.876 -0.724 18.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.120 4.120 3 C -0.091 4.091 4 C -0.135 4.135 5 C -0.124 4.124 6 C -0.076 4.076 7 C 0.122 3.878 8 H 0.113 0.887 9 N -0.410 5.410 10 C 0.361 3.639 11 O -0.456 6.456 12 C -0.581 4.581 13 H 0.086 0.914 14 C -0.131 4.131 15 N -0.394 5.394 16 Si 0.731 3.269 17 H -0.198 1.198 18 H -0.205 1.205 19 H -0.189 1.189 20 C -0.041 4.041 21 C -0.125 4.125 22 C -0.114 4.114 23 C -0.183 4.183 24 C 0.073 3.927 25 F -0.125 7.125 26 C -0.158 4.158 27 C -0.122 4.122 28 C -0.134 4.134 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.137 0.863 35 H 0.140 0.860 36 H 0.214 0.786 37 H 0.079 0.921 38 H 0.143 0.857 39 H 0.146 0.854 40 H 0.146 0.854 41 H 0.149 0.851 42 H 0.140 0.860 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 2.544 -17.227 0.140 17.414 hybrid contribution -0.447 0.458 -0.807 1.030 sum 2.097 -16.769 -0.667 16.913 Atomic orbital electron populations 1.21751 0.94847 1.01410 1.02414 1.20509 0.96095 0.92872 1.02511 1.19838 0.99779 0.96132 0.93307 1.20931 1.00424 0.94772 0.97374 1.21007 0.99053 0.94727 0.97608 1.19978 0.98655 0.95408 0.93543 1.18285 0.86425 0.87543 0.95561 0.88670 1.46353 1.63353 1.08456 1.22866 1.18249 0.79404 0.78707 0.87565 1.90613 1.52158 1.68090 1.34741 1.20838 1.40949 0.93453 1.02883 0.91407 1.25680 0.94327 0.97626 0.95479 1.70018 1.34342 1.09433 1.25587 0.86379 0.80149 0.78994 0.81376 1.19802 1.20460 1.18881 1.20211 0.96103 0.95113 0.92692 1.20976 0.95060 0.99633 0.96796 1.20914 0.93047 0.99059 0.98338 1.21000 1.00586 1.05336 0.91359 1.17624 0.87361 1.03523 0.84201 1.91457 1.70047 1.93491 1.57497 1.20945 0.91092 1.03238 1.00559 1.20953 0.99027 0.94474 0.97774 1.20943 1.00335 0.94780 0.97357 0.92464 0.92659 0.92531 0.91262 0.91307 0.86341 0.85957 0.78588 0.92082 0.85671 0.85448 0.85401 0.85086 0.85952 0.86305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.90 37.16 0.37 -0.84 16 2 C -0.08 -0.72 6.06 -27.88 -0.17 -0.89 16 3 C -0.09 -1.03 5.13 -104.62 -0.54 -1.57 16 4 C -0.12 -1.41 9.70 -39.58 -0.38 -1.79 16 5 C -0.11 -1.46 9.67 -39.59 -0.38 -1.84 16 6 C -0.08 -1.15 4.94 -104.63 -0.52 -1.67 16 7 C 0.23 4.26 2.38 -70.23 -0.17 4.09 16 8 H 0.10 1.99 7.30 -51.93 -0.38 1.61 16 9 N -0.76 -15.96 4.27 -57.48 -0.25 -16.20 16 10 C 0.56 15.20 7.70 -12.99 -0.10 15.10 16 11 O -0.57 -17.99 14.71 5.20 0.08 -17.91 16 12 C -0.54 -14.94 9.53 -35.63 -0.34 -15.28 16 13 H 0.07 1.70 7.85 -52.49 -0.41 1.29 16 14 C 0.09 2.44 5.49 -17.37 -0.10 2.34 16 15 N -0.77 -22.66 11.85 55.55 0.66 -22.00 16 16 Si 0.91 19.87 29.56 -169.99 -5.03 14.85 16 17 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 18 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 19 H -0.26 -5.59 7.11 56.52 0.40 -5.19 16 20 C -0.04 -0.71 4.90 -104.63 -0.51 -1.22 16 21 C -0.11 -1.74 9.12 -39.58 -0.36 -2.11 16 22 C -0.10 -1.39 10.04 -39.60 -0.40 -1.79 16 23 C -0.16 -2.44 10.03 -39.51 -0.40 -2.83 16 24 C 0.09 1.54 7.30 -39.42 -0.29 1.25 16 25 F -0.15 -2.42 17.27 2.25 0.04 -2.38 16 26 C -0.14 -2.45 9.65 -39.52 -0.38 -2.84 16 27 C -0.10 -1.42 8.85 -39.58 -0.35 -1.77 16 28 C -0.12 -1.38 9.70 -39.58 -0.38 -1.77 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 33 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 34 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 35 H 0.12 1.57 8.04 -52.49 -0.42 1.15 16 36 H 0.38 7.08 6.83 -40.82 -0.28 6.80 16 37 H 0.27 7.24 8.29 -40.82 -0.34 6.90 16 38 H 0.13 1.91 7.27 -52.49 -0.38 1.53 16 39 H 0.13 1.46 8.06 -52.48 -0.42 1.04 16 40 H 0.13 1.57 8.06 -52.49 -0.42 1.14 16 41 H 0.13 2.18 8.04 -52.48 -0.42 1.76 16 42 H 0.12 1.56 6.45 -52.49 -0.34 1.22 16 43 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 LS Contribution 371.98 15.07 5.61 5.61 Total: -1.00 -33.62 371.98 -9.85 -43.47 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -5.57 Total: 9.99 kcal Atomic # 6 Polarization: -10.01 SS G_CDS: -5.39 Total: -15.41 kcal Atomic # 7 Polarization: -38.62 SS G_CDS: 0.41 Total: -38.20 kcal Atomic # 8 Polarization: -17.99 SS G_CDS: 0.08 Total: -17.91 kcal Atomic # 9 Polarization: -2.42 SS G_CDS: 0.04 Total: -2.38 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.03 Total: 14.85 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.62 -9.85 -43.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320371470.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.272 kcal (2) G-P(sol) polarization free energy of solvation -33.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds